mRNA_F-serratus_M_contig793.19220.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig793.19220.1
Unique NamemRNA_F-serratus_M_contig793.19220.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig793.19220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig793contigF-serratus_M_contig793:21855..22290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size436
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig793.19220.1prot_F-serratus_M_contig793.19220.1Fucus serratus malepolypeptideF-serratus_M_contig793 21963..22277 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932357.6456892-UTR-F-serratus_M_contig793:21854..219621622932357.6456892-UTR-F-serratus_M_contig793:21854..21962Fucus serratus maleUTRF-serratus_M_contig793 21855..21962 +
1690964269.4434679-UTR-F-serratus_M_contig793:21854..219621690964269.4434679-UTR-F-serratus_M_contig793:21854..21962Fucus serratus maleUTRF-serratus_M_contig793 21855..21962 +
1622932357.6896207-UTR-F-serratus_M_contig793:22277..222901622932357.6896207-UTR-F-serratus_M_contig793:22277..22290Fucus serratus maleUTRF-serratus_M_contig793 22278..22290 +
1690964269.4668992-UTR-F-serratus_M_contig793:22277..222901690964269.4668992-UTR-F-serratus_M_contig793:22277..22290Fucus serratus maleUTRF-serratus_M_contig793 22278..22290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932357.6651633-CDS-F-serratus_M_contig793:21962..222771622932357.6651633-CDS-F-serratus_M_contig793:21962..22277Fucus serratus maleCDSF-serratus_M_contig793 21963..22277 +
1690964269.4557974-CDS-F-serratus_M_contig793:21962..222771690964269.4557974-CDS-F-serratus_M_contig793:21962..22277Fucus serratus maleCDSF-serratus_M_contig793 21963..22277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig793.19220.1

>prot_F-serratus_M_contig793.19220.1 ID=prot_F-serratus_M_contig793.19220.1|Name=mRNA_F-serratus_M_contig793.19220.1|organism=Fucus serratus male|type=polypeptide|length=105bp
MLAGSLLSQVGGARSNSPMCVCVFFFFHVYSGRQVRWMYQPGSVTEEEGH
TGFLIHLPSAVHAFIFLARTIQPFLSLVDREVEFCVLTIQSCSTYYFILV
RKNR*
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mRNA from alignment at F-serratus_M_contig793:21855..22290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig793.19220.1 ID=mRNA_F-serratus_M_contig793.19220.1|Name=mRNA_F-serratus_M_contig793.19220.1|organism=Fucus serratus male|type=mRNA|length=436bp|location=Sequence derived from alignment at F-serratus_M_contig793:21855..22290+ (Fucus serratus male)
TGATGGGAGTCGAGCTGTCGAGATGGGTTGTCGCCAAGCCCCACCTTTCC
GCCACTAGCAGTTCCGTCACTAGCAGCCCAGCTTCTAGCTCTGCCCTCTC
GCTCCGCCATGCTTGCTGGTTCGTTGCTGTCCCAAGTGGGCGGGGCTCGT
TCGAACTCACCGATGTGTGTGTGTGTGTTTTTTTTCTTCCACGTTTATTC
TGGACGTCAAGTTCGTTGGATGTACCAGCCGGGGTCAGTCACAGAGGAGG
AAGGTCACACAGGATTTCTCATCCACCTTCCTTCTGCGGTGCATGCCTTT
ATTTTCCTCGCTAGAACGATTCAGCCGTTCCTTTCCCTCGTCGACCGTGA
AGTCGAATTTTGTGTACTAACGATTCAATCATGCTCCACTTATTATTTCA
TTTTAGTGAGGAAAAATCGTTAGGCTATTCTTTATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig793:21855..22290+

>mRNA_F-serratus_M_contig793.19220.1 ID=mRNA_F-serratus_M_contig793.19220.1|Name=mRNA_F-serratus_M_contig793.19220.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig793:21855..22290+ (Fucus serratus male)
ATGCTTGCTGGTTCGTTGCTGTCCCAAGTGGGCGGGGCTCGTTCGAACTC
ACCGATGTGTGTGTGTGTGTTTTTTTTCTTCCACGTTTATTCTGGACGTC
AAGTTCGTTGGATGTACCAGCCGGGGTCAGTCACAGAGGAGGAAGGTCAC
ACAGGATTTCTCATCCACCTTCCTTCTGCGGTGCATGCCTTTATTTTCCT
CGCTAGAACGATTCAGCCGTTCCTTTCCCTCGTCGACCGTGAAGTCGAAT
TTTGTGTACTAACGATTCAATCATGCTCCACTTATTATTTCATTTTAGTG
AGGAAAAATCGTTAGATGCTTGCTGGTTCGTTGCTGTCCCAAGTGGGCGG
GGCTCGTTCGAACTCACCGATGTGTGTGTGTGTGTTTTTTTTCTTCCACG
TTTATTCTGGACGTCAAGTTCGTTGGATGTACCAGCCGGGGTCAGTCACA
GAGGAGGAAGGTCACACAGGATTTCTCATCCACCTTCCTTCTGCGGTGCA
TGCCTTTATTTTCCTCGCTAGAACGATTCAGCCGTTCCTTTCCCTCGTCG
ACCGTGAAGTCGAATTTTGTGTACTAACGATTCAATCATGCTCCACTTAT
TATTTCATTTTAGTGAGGAAAAATCGTTAG
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