mRNA_F-serratus_M_contig791.19199.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig791.19199.1
Unique NamemRNA_F-serratus_M_contig791.19199.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig791.19199.1 vs. uniprot
Match: A0A6H5JZN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN1_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.400e-5
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 2 
Query:  794 KVREDPKLEATERTYTAAINCFQHYTPGVKVASLDSTMAG 913
            KVR DP LEA +RTYT+AINCFQ +  G  VASL ST+AG
Sbjct:  404 KVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAG 443
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BLAST of mRNA_F-serratus_M_contig791.19199.1 vs. uniprot
Match: D7G0G1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G1_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.920e-5
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 2 
Query:  794 KVREDPKLEATERTYTAAINCFQHYTPGVKVASLDSTMAG 913
            KVR DP LEA +RTYT+AINCFQ +  G  VASL ST+AG
Sbjct:  579 KVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAG 618
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig791.19199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZN1_9PHAE2.400e-567.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0G1_ECTSI2.920e-567.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig791contigF-serratus_M_contig791:134010..137813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-16_000540.1
Exons7
Model size1328
Cds size966
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932351.8882568-UTR-F-serratus_M_contig791:134009..1343101622932351.8882568-UTR-F-serratus_M_contig791:134009..134310Fucus serratus maleUTRF-serratus_M_contig791 134010..134310 -
1690964266.4766066-UTR-F-serratus_M_contig791:134009..1343101690964266.4766066-UTR-F-serratus_M_contig791:134009..134310Fucus serratus maleUTRF-serratus_M_contig791 134010..134310 -
1622932352.0293257-UTR-F-serratus_M_contig791:137752..1378131622932352.0293257-UTR-F-serratus_M_contig791:137752..137813Fucus serratus maleUTRF-serratus_M_contig791 137753..137813 -
1690964266.5589035-UTR-F-serratus_M_contig791:137752..1378131690964266.5589035-UTR-F-serratus_M_contig791:137752..137813Fucus serratus maleUTRF-serratus_M_contig791 137753..137813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932351.9061315-CDS-F-serratus_M_contig791:134310..1345411622932351.9061315-CDS-F-serratus_M_contig791:134310..134541Fucus serratus maleCDSF-serratus_M_contig791 134311..134541 -
1690964266.4881985-CDS-F-serratus_M_contig791:134310..1345411690964266.4881985-CDS-F-serratus_M_contig791:134310..134541Fucus serratus maleCDSF-serratus_M_contig791 134311..134541 -
1622932351.919072-CDS-F-serratus_M_contig791:134877..1350661622932351.919072-CDS-F-serratus_M_contig791:134877..135066Fucus serratus maleCDSF-serratus_M_contig791 134878..135066 -
1690964266.4980965-CDS-F-serratus_M_contig791:134877..1350661690964266.4980965-CDS-F-serratus_M_contig791:134877..135066Fucus serratus maleCDSF-serratus_M_contig791 134878..135066 -
1622932351.9395218-CDS-F-serratus_M_contig791:135299..1354641622932351.9395218-CDS-F-serratus_M_contig791:135299..135464Fucus serratus maleCDSF-serratus_M_contig791 135300..135464 -
1690964266.5060463-CDS-F-serratus_M_contig791:135299..1354641690964266.5060463-CDS-F-serratus_M_contig791:135299..135464Fucus serratus maleCDSF-serratus_M_contig791 135300..135464 -
1622932351.9609601-CDS-F-serratus_M_contig791:135847..1359881622932351.9609601-CDS-F-serratus_M_contig791:135847..135988Fucus serratus maleCDSF-serratus_M_contig791 135848..135988 -
1690964266.516039-CDS-F-serratus_M_contig791:135847..1359881690964266.516039-CDS-F-serratus_M_contig791:135847..135988Fucus serratus maleCDSF-serratus_M_contig791 135848..135988 -
1622932351.9770057-CDS-F-serratus_M_contig791:136520..1366201622932351.9770057-CDS-F-serratus_M_contig791:136520..136620Fucus serratus maleCDSF-serratus_M_contig791 136521..136620 -
1690964266.5258045-CDS-F-serratus_M_contig791:136520..1366201690964266.5258045-CDS-F-serratus_M_contig791:136520..136620Fucus serratus maleCDSF-serratus_M_contig791 136521..136620 -
1622932351.9961088-CDS-F-serratus_M_contig791:137021..1371411622932351.9961088-CDS-F-serratus_M_contig791:137021..137141Fucus serratus maleCDSF-serratus_M_contig791 137022..137141 -
1690964266.5364487-CDS-F-serratus_M_contig791:137021..1371411690964266.5364487-CDS-F-serratus_M_contig791:137021..137141Fucus serratus maleCDSF-serratus_M_contig791 137022..137141 -
1622932352.0114233-CDS-F-serratus_M_contig791:137732..1377521622932352.0114233-CDS-F-serratus_M_contig791:137732..137752Fucus serratus maleCDSF-serratus_M_contig791 137733..137752 -
1690964266.5479143-CDS-F-serratus_M_contig791:137732..1377521690964266.5479143-CDS-F-serratus_M_contig791:137732..137752Fucus serratus maleCDSF-serratus_M_contig791 137733..137752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig791.19199.1prot_F-serratus_M_contig791.19199.1Fucus serratus malepolypeptideF-serratus_M_contig791 134311..137752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig791.19199.1

>prot_F-serratus_M_contig791.19199.1 ID=prot_F-serratus_M_contig791.19199.1|Name=mRNA_F-serratus_M_contig791.19199.1|organism=Fucus serratus male|type=polypeptide|length=322bp
MREAGISPSIFAFNAAISACGRRGRWQEALDLLEAMPKEGISPDVFSFNG
VIDACGKGGEWQRALILLQNMEKVGVSPNQVSYNSALDACGKGGRADKAI
DLLTQMEVDGCEPGLITYNAAIYACARGGNHRKAAELLQEMNARGMPPNT
ISYNSAIYACGRGGEWQLALDLLDLMRKSGLTPDTFSFNTAIAACARAGD
WRRALDLLAGMKVEGLPPDIFSYNAAIGACAKGGQWMIGLELLAKVREDP
KLEATERTYTAAINCFQHYTPGVKVASLDSTMAGYEPPASDGHSIWTPKK
MMARDEKSSQLPPLESSDELF*
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mRNA from alignment at F-serratus_M_contig791:134010..137813-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig791.19199.1 ID=mRNA_F-serratus_M_contig791.19199.1|Name=mRNA_F-serratus_M_contig791.19199.1|organism=Fucus serratus male|type=mRNA|length=3804bp|location=Sequence derived from alignment at F-serratus_M_contig791:134010..137813- (Fucus serratus male)
GGTCATTGAAGCTTGCGCCAAGGGGGAGAAATGGGAGCAGGCGATACGGT
ACCTGGACGAGATGCGGGAGGCTGGGATTTCGTGAGTGGCGGCATTTTAA
GCGGGGGGTGGGGGATGGGGTTGCGGTTGCGTTACGAAGGGGGGACGGGG
GGGTTGTTCTCAAGGAAGGAGAAGGGGCGGAAGGAGTGAGGGTGATTTGG
CTATTACTATTAGTAGACGCCCGCTTGTTAGCAAGTCAAAACGCTGCGGA
CCTTCAGACACTGATACCATTAGCGAAGCGCATCGTTGGCCGTGTTGAAT
CTATGTGTTGGGTTCGCGTGCGCGCGGATCGATTTTATAGCCGATGGGCC
TCAACGTTACCATCCTATCAATGCCTGTAGTCACCAAGGATCTTTCCATC
TCTCCCCGGTTCAGGCCTTGCGATTTTTCATCGCGGTGCAAGTTCAGCAC
TCTTACAACTCGTCAACCGAAGGTTGAATTTTACCTACTCACGTACTCAC
GCTTTCCGTTATAATAGGGAAGAAAAAACGCAAATCCCGCTTGACAAAAG
TCGAACTCACGACTTCCGCACTAGCAGGTATGCAGGTTACCAACTAGTAG
TCCACTCGAGCGACGAGGGCAATGGATCTGACAAAAGTCCCAGCGCCTCC
CGCGTTGTTCTTTTTCTCCCAGGCCCTCCATATTTGCTTTTAACGCTGCG
ATCTCTGCCTGCGGTAGACGCGGTCGCTGGCAAGAGGCTCTCGACCTCCT
CGAGGCCATGCCGAAGGAAGGAATCTCTCCGGATGTGTTCAGGTACTGCT
GGTGCACTCTCCGTGAGCTGCGTGGGGTGTGTTGAATCTCGTGCCCTCTC
CTCGCCAAGGCCAAGGCTTTCAGGTGTTGGATCGTTTCATGCTGTGCCAA
CTTCGTGAGATAAAACTCACGAAGCATCCCTTGTCAGCATCTTAAGCGTT
GATCTGTCCGCTCGACTATCGTAAATAAATGCCAACGACAAAGTGGTTTC
CATCCGGCGCGGCTTTTATCTCTCGGTGTTGTCGAGCCATATAATATATT
TAGTCTATATAATCTATATAAATTATAATCTACATACCAGGTATTGACTA
GGACCGGAAACATACTAGGAATTTGAAGGCCGCCGGAGTTGTTCGATAGA
TCACGCCCTCAATGATCTCCCAAAACTGCTCTATTTATCGCAGTTTTAAC
GGGGTGATAGATGCTTGTGGTAAGGGCGGCGAATGGCAGCGAGCTCTGAT
TCTCTTGCAGAACATGGAAAAGGTTGGCGTGTCACCCAACCAGGTCAGAT
CGAGGGTGGGCGAAGGCTTAGTATGCTGGTGACTCGTAAGATATGTCGAG
ATCATCGTCGGACTGTCTTGCTTTTCGTCGACTTGGTGTTGTGCGGGTAG
GGTACCCTTGCCGTTTTTGAACGGTTTGCAGTACTGTACTGAACTGTACT
GTGTCGAGCTCGGCTGTATGTGTAACGTTTCCTGAAATAAGCCTCATGCC
CACTTTATTTGACAAGGTGGCGTGCTATTGTATTGATAGGTCTGCAACAA
CGCGAAACAGTGTCACCCCGTACTTTTTCAGTATTTGTCACGAAAACACT
GGGATATATTGTAGGCGGCGACTGTCGTTCGTGACGTGGTTGCCACGGGT
GAAGCGCGCGAAAGACACCCATCATATATATATCATCTATACCGTACCGA
TGCTGTTCCTCCGGAGTAAATAGCGCTCGTACACTAGTATGCCTCCTGGT
GCCCCCTTAAGAACAAGGGTCCTTTTCACGTGTATTTGTTTCCAAACTCG
AGTGTCGTATTTTGGGGACTCATAGGTGAGCTACAACTCGGCGTTGGACG
CCTGCGGCAAGGGAGGACGGGCGGACAAGGCGATCGACCTGCTCACGCAG
ATGGAAGTCGATGGCTGCGAGCCAGGGTTGATCACCTACAACGCGGCAAT
CTACGCCTGCGCAAGGGTGGGTATTTTTGCCTTTTAACAAATGCAAGGAG
AAAAACTCGATGTACGCCGTTCAATTTGCGCCGTGGGGGTTGATCGCCAA
CACCCAAACACCTATTAAAACCCCCGTGTCCATTTTTGCCACCCTACCCC
CTCCCCTCCTAAAAATGTGCGTTCTAAGTCAGGCAAAAATCCCCTTGCAG
AATCTAGTCCTATGCGAAATATCATGGTGATACCATGATTCAGTTTTCGG
TGGCCGTCCTTCTTGAGAGTTGAGCCGCTTCGTGTCTGTGTCAAGAACGC
TCGCCTTGGGGCAAATTTGCAGCTCAAACTCTATATATAGTACAAATACT
CACCAAGCGAAGGACCCCCATGCCTTGGTCTCAAATGGTCTCAAATCAGG
GGGGGAATCACAGGAAAGCTGCCGAGCTCCTGCAAGAGATGAACGCCCGC
GGGATGCCTCCCAACACTATCAGCTACAACTCCGCCATCTACGCGTGCGG
ACGAGGCGGGGAGTGGCAGCTCGCACTTGATCTCCTGGACCTGATGCGGA
AGTCGGGCCTCACGGTGAGGGGAATATATGCGCCGGCACCGCCTTTAAGG
GTCGGCAGAGCCTCATCACTTCTCGGAGCGCGGCAGCGACACAGCGTACA
CACCATCCCAGTCGTGCATAGTTGAGGTGTGCTTGGCGTTGTGCCATATG
GTGGAATTCGATTCACACGGCAACAGTCCTAAGCTTCAGTTTGTGTACCT
CGGGGTGCGTCTCTCTGAAATGCGGCTGCTTTGTTCTGCGCGCGCAGCCG
GATACCTTTAGTTTCAACACGGCGATAGCCGCATGCGCGCGGGCAGGAGA
CTGGAGGAGGGCACTCGATCTCTTGGCAGGGATGAAGGTGGAAGGGCTGC
CACCTGATATCTTCTCGTACAACGCAGCGATCGGTGCCTGTGCCAAGGGT
GGCCAATGGATGATCGGGCTCGAGCTCCTGGCCAAGGTGCTGCAGGCGTT
CTGATAACCCTGGAGTACCTTCACGCTGCATACCATTACTATGCGAAATG
TCACCATCGACTCACAAACGTGTAGACACTTTTGGTGTGATCCCTATATA
GTGGTGTCTCCAAGCTGTGGCCATAGACAATTGAGAAGTCAATGCTCATT
TCTTTCCTCGCGATGGGTCTGTACGCAACAATGTGGTACCTAGGGGATAC
TCGACGAAGAATCAGTCACTTTCCCAGTCCGTTCGGCTGCCGATTGATAC
TAGTAATAGTATTATAATAGTACTGCATATCGGTTACATATCGGTTACAT
ATCGGTTACATATCGGTTACAGGTGCGCGAGGACCCGAAATTGGAAGCCA
CGGAACGGACGTACACTGCAGCAATCAACTGCTTTCAACACTACACACCG
GGCGTGAAGGTGGCCAGCTTGGACTCCACCATGGCGGGTTACGAACCTCC
GGCGTCAGATGGACACTCGATATGGACTCCCAAGAAAATGATGGCCCGAG
ATGAAAAATCATCACAGCTGCCGCCTTTGGAGAGCAGTGATGAACTATTC
TGAAACGTTTGCTGTGTTTGGTTTGTTTGAAATGTTGTACTTTCCGTTGG
GAGTTCAATAGATCCAGGCGATAAGAGGGAGGAGTGGTGCTCTGTAGATG
GATGAGACGACGATGCGCCTGCTACCGTTGAGTCGCGTATCGAAAAGAGA
TGACACGCGTAACGTAGATGACACCGCATCGATCGATGAGTTTATTTGCT
TGACAGGAAAATACAATATTTTGAGTATCTTGTAAGACGTAAGACATAGT
CATAAAAAAGTAGTTATTATTATTAGTGTCTTGCAATACACATACATACA
TAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig791:134010..137813-

>mRNA_F-serratus_M_contig791.19199.1 ID=mRNA_F-serratus_M_contig791.19199.1|Name=mRNA_F-serratus_M_contig791.19199.1|organism=Fucus serratus male|type=CDS|length=1932bp|location=Sequence derived from alignment at F-serratus_M_contig791:134010..137813- (Fucus serratus male)
ATGCGGGAGGCTGGGATTTCATGCGGGAGGCTGGGATTTCGCCCTCCATA
TTTGCTTTTAACGCTGCGATCTCTGCCTGCGGTAGACGCGGTCGCTGGCA
AGAGGCTCTCGACCTCCTCGAGGCCATGCCGAAGGAAGGAATCTCTCCGG
ATGTGTTCAGGCCCTCCATATTTGCTTTTAACGCTGCGATCTCTGCCTGC
GGTAGACGCGGTCGCTGGCAAGAGGCTCTCGACCTCCTCGAGGCCATGCC
GAAGGAAGGAATCTCTCCGGATGTGTTCAGTTTTAACGGGGTGATAGATG
CTTGTGGTAAGGGCGGCGAATGGCAGCGAGCTCTGATTCTCTTGCAGAAC
ATGGAAAAGGTTGGCGTGTCACCCAACCAGTTTTAACGGGGTGATAGATG
CTTGTGGTAAGGGCGGCGAATGGCAGCGAGCTCTGATTCTCTTGCAGAAC
ATGGAAAAGGTTGGCGTGTCACCCAACCAGGTGAGCTACAACTCGGCGTT
GGACGCCTGCGGCAAGGGAGGACGGGCGGACAAGGCGATCGACCTGCTCA
CGCAGATGGAAGTCGATGGCTGCGAGCCAGGGTTGATCACCTACAACGCG
GCAATCTACGCCTGCGCAAGGGTGAGCTACAACTCGGCGTTGGACGCCTG
CGGCAAGGGAGGACGGGCGGACAAGGCGATCGACCTGCTCACGCAGATGG
AAGTCGATGGCTGCGAGCCAGGGTTGATCACCTACAACGCGGCAATCTAC
GCCTGCGCAAGGGGGGGGAATCACAGGAAAGCTGCCGAGCTCCTGCAAGA
GATGAACGCCCGCGGGATGCCTCCCAACACTATCAGCTACAACTCCGCCA
TCTACGCGTGCGGACGAGGCGGGGAGTGGCAGCTCGCACTTGATCTCCTG
GACCTGATGCGGAAGTCGGGCCTCACGGGGGGGAATCACAGGAAAGCTGC
CGAGCTCCTGCAAGAGATGAACGCCCGCGGGATGCCTCCCAACACTATCA
GCTACAACTCCGCCATCTACGCGTGCGGACGAGGCGGGGAGTGGCAGCTC
GCACTTGATCTCCTGGACCTGATGCGGAAGTCGGGCCTCACGCCGGATAC
CTTTAGTTTCAACACGGCGATAGCCGCATGCGCGCGGGCAGGAGACTGGA
GGAGGGCACTCGATCTCTTGGCAGGGATGAAGGTGGAAGGGCTGCCACCT
GATATCTTCTCGTACAACGCAGCGATCGGTGCCTGTGCCAAGGGTGGCCA
ATGGATGATCGGGCTCGAGCTCCTGGCCAAGCCGGATACCTTTAGTTTCA
ACACGGCGATAGCCGCATGCGCGCGGGCAGGAGACTGGAGGAGGGCACTC
GATCTCTTGGCAGGGATGAAGGTGGAAGGGCTGCCACCTGATATCTTCTC
GTACAACGCAGCGATCGGTGCCTGTGCCAAGGGTGGCCAATGGATGATCG
GGCTCGAGCTCCTGGCCAAGGTGCGCGAGGACCCGAAATTGGAAGCCACG
GAACGGACGTACACTGCAGCAATCAACTGCTTTCAACACTACACACCGGG
CGTGAAGGTGGCCAGCTTGGACTCCACCATGGCGGGTTACGAACCTCCGG
CGTCAGATGGACACTCGATATGGACTCCCAAGAAAATGATGGCCCGAGAT
GAAAAATCATCACAGCTGCCGCCTTTGGAGAGCAGTGATGAACTATTCTG
AGTGCGCGAGGACCCGAAATTGGAAGCCACGGAACGGACGTACACTGCAG
CAATCAACTGCTTTCAACACTACACACCGGGCGTGAAGGTGGCCAGCTTG
GACTCCACCATGGCGGGTTACGAACCTCCGGCGTCAGATGGACACTCGAT
ATGGACTCCCAAGAAAATGATGGCCCGAGATGAAAAATCATCACAGCTGC
CGCCTTTGGAGAGCAGTGATGAACTATTCTGA
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