mRNA_F-serratus_M_contig791.19195.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig791.19195.1
Unique NamemRNA_F-serratus_M_contig791.19195.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig791.19195.1 vs. uniprot
Match: D7G541_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G541_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 8.380e-9
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:   16 AAKDVFCGALFSPTARKTLFENDEMLREIFITLVGRQRDRDRLCGAHGKGDISTDKVDANAGVQALRTDCR 228
            A++D+F     SPT+R  LF+ND+ML+EIF+TLVGRQ DRD L    G    S ++++    ++ LR DCR
Sbjct:  344 ASQDIFGSPWSSPTSRNLLFDNDQMLQEIFLTLVGRQGDRDSLNDREGG---SRNQLEDTTVLKGLRADCR 411
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig791.19195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G541_ECTSI8.380e-946.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig791contigF-serratus_M_contig791:22419..24072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size447
Cds size447
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig791.19195.1prot_F-serratus_M_contig791.19195.1Fucus serratus malepolypeptideF-serratus_M_contig791 22419..24072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932351.7686322-CDS-F-serratus_M_contig791:22418..225051622932351.7686322-CDS-F-serratus_M_contig791:22418..22505Fucus serratus maleCDSF-serratus_M_contig791 22419..22505 +
1690964266.4211512-CDS-F-serratus_M_contig791:22418..225051690964266.4211512-CDS-F-serratus_M_contig791:22418..22505Fucus serratus maleCDSF-serratus_M_contig791 22419..22505 +
1622932351.790209-CDS-F-serratus_M_contig791:22703..228431622932351.790209-CDS-F-serratus_M_contig791:22703..22843Fucus serratus maleCDSF-serratus_M_contig791 22704..22843 +
1690964266.4323535-CDS-F-serratus_M_contig791:22703..228431690964266.4323535-CDS-F-serratus_M_contig791:22703..22843Fucus serratus maleCDSF-serratus_M_contig791 22704..22843 +
1622932351.8138418-CDS-F-serratus_M_contig791:23546..236331622932351.8138418-CDS-F-serratus_M_contig791:23546..23633Fucus serratus maleCDSF-serratus_M_contig791 23547..23633 +
1690964266.4482403-CDS-F-serratus_M_contig791:23546..236331690964266.4482403-CDS-F-serratus_M_contig791:23546..23633Fucus serratus maleCDSF-serratus_M_contig791 23547..23633 +
1622932351.8263187-CDS-F-serratus_M_contig791:23753..238491622932351.8263187-CDS-F-serratus_M_contig791:23753..23849Fucus serratus maleCDSF-serratus_M_contig791 23754..23849 +
1690964266.4586294-CDS-F-serratus_M_contig791:23753..238491690964266.4586294-CDS-F-serratus_M_contig791:23753..23849Fucus serratus maleCDSF-serratus_M_contig791 23754..23849 +
1622932351.8404782-CDS-F-serratus_M_contig791:24035..240721622932351.8404782-CDS-F-serratus_M_contig791:24035..24072Fucus serratus maleCDSF-serratus_M_contig791 24036..24072 +
1690964266.4674218-CDS-F-serratus_M_contig791:24035..240721690964266.4674218-CDS-F-serratus_M_contig791:24035..24072Fucus serratus maleCDSF-serratus_M_contig791 24036..24072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig791.19195.1

>prot_F-serratus_M_contig791.19195.1 ID=prot_F-serratus_M_contig791.19195.1|Name=mRNA_F-serratus_M_contig791.19195.1|organism=Fucus serratus male|type=polypeptide|length=149bp
MLQDCAAKDVFCGALFSPTARKTLFENDEMLREIFITLVGRQRDRDRLCG
AHGKGDISTDKVDANAGVQALRTDCRVNGFSQTWEQAVVKGHGTVGYFEV
LTFCWEYGLHPSVANSGENNFLLAHMFVGASHAATIRIVPDDEECEHPE
back to top

mRNA from alignment at F-serratus_M_contig791:22419..24072+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig791.19195.1 ID=mRNA_F-serratus_M_contig791.19195.1|Name=mRNA_F-serratus_M_contig791.19195.1|organism=Fucus serratus male|type=mRNA|length=1654bp|location=Sequence derived from alignment at F-serratus_M_contig791:22419..24072+ (Fucus serratus male)
ATGCTCCAGGATTGCGCAGCTAAGGACGTTTTCTGTGGCGCGTTATTCAG
CCCCACGGCCCGAAAGACTTTGTTCGAAAACGACGAGGTCAGGTAGTCTT
TACCTTGATTGCGGTCGACCACACAGGTTTACACGTTGTTGCTGGCTTAG
TCGTAGTTCCAGTGTTTTCTGACGGCGTCGCGCGGTCGCCACCTTCCATG
CCAGCCATGTCAGCGTCTGGTCGACCACCGGTGGTCATAATTCAACATAT
AAAACCGACATGGTTATATGGCATGCTACGCACAGATGTTGCGGGAGATA
TTCATCACACTGGTAGGAAGACAGAGAGACAGAGATAGGCTTTGTGGCGC
TCATGGTAAGGGGGATATTTCAACCGATAAGGTGGATGCAAACGCCGGGG
TTCAGGCTCTCAGGACAGACTGCAGGTGATGATAGTCGATCGACCGCTCG
CTGTGAAGCACGCCTGATACGCTTTCAACCTGTCTGGACGGTTCTTCTAT
TTATTTTGCCGTCGTATGACTTGTGCGACGTCCTTCTACTGCTGATGCTT
GTACGTGTCGTGATAACGTCACAAATCAATAATGCTGCTTGGTGCCTGTA
AACAGCGCGTACGGCCGTGATTTCCGACCTTCTGCAATTCATTGAGGCTT
AATTTTGCATTTTACAACTTTACAGGTAGTCAATCTGGTGAGGTACCATG
AATCTATCGTATGTTGATGGTTGGTAGAGCTAAAACAGACGGGTAAACTG
ATAAATGCTCATTTGACATAATACTATGGGTGGTACCCCTCAATATGTCC
CCACAATTGCTCTGTTAAAAGCGAAGTGTGTGAAGTATTAATACAACTTA
TTACGAAGTGTGGTTTATTGTAAATTCATATTATTGTGACAGCACTTGAC
ACCCCCTAGCAAGATATACGCACACTGTGGGCGGCCGTCCGCCCAAAGCG
TGAAGCACAACCTTCCTAAGTTGCTATTTGCCATTTGCCATTTGATAGAC
GGTTGGCAGTTGGTCATTGACAGGGCTACGGGCCCGCACCGTCGGCGCAG
CGTTTCATCCCGCTTTCCCCTCCACGCCATGTATAAGGTCGAAATACAAC
ACGATGTTTCCATGTTGACCTTGCTCAGGGTTAATGGGTTCAGTCAAACA
TGGGAGCAGGCCGTCGTCAAGGGGCACGGCACGGTGGGATACTTTGAAGT
GCTGACATTCTGCTGGTAAGAGTCTGTCTTGCATATATCATAGCTTGTGC
TTCTTATAGTGTTGAATCTTGTTCTCTATTTTCATGTCTCCGCGCTTGAC
CTGCATCGACAAATCGTACCATGTTATGACACCAGGGAATACGGACTGCA
TCCGAGTGTGGCGAACAGCGGCGAGAACAACTTCTTGCTCGCGCACATGT
TCGTCGGGGCATCGCACGCTGCTACAATTAGGTACTGGTACTTGCATGAG
TATAAGTTCGCGGAGAACGTGTATCTCTTCTACTTATGATGTGCTACATC
GGCTTGATACGTTACACTCACGTCACCTTGACGTCATGATGATGGCCGCT
CTACTCTCATCGGACGATCACCTACGGCCCTTTATCGTACTTTGATTCTG
TATCCACTTAATATAAGAATCGTGCCCGATGATGAGGAATGTGAGCATCC
CGAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig791:22419..24072+

>mRNA_F-serratus_M_contig791.19195.1 ID=mRNA_F-serratus_M_contig791.19195.1|Name=mRNA_F-serratus_M_contig791.19195.1|organism=Fucus serratus male|type=CDS|length=894bp|location=Sequence derived from alignment at F-serratus_M_contig791:22419..24072+ (Fucus serratus male)
ATGCTCCAGGATTGCGCAGCTAAGGACGTTTTCTGTGGCGCGTTATTCAG
CCCCACGGCCCGAAAGACTTTGTTCGAAAACGACGAGATGCTCCAGGATT
GCGCAGCTAAGGACGTTTTCTGTGGCGCGTTATTCAGCCCCACGGCCCGA
AAGACTTTGTTCGAAAACGACGAGATGTTGCGGGAGATATTCATCACACT
GGTAGGAAGACAGAGAGACAGAGATAGGCTTTGTGGCGCTCATGGTAAGG
GGGATATTTCAACCGATAAGGTGGATGCAAACGCCGGGGTTCAGGCTCTC
AGGACAGACTGCAGATGTTGCGGGAGATATTCATCACACTGGTAGGAAGA
CAGAGAGACAGAGATAGGCTTTGTGGCGCTCATGGTAAGGGGGATATTTC
AACCGATAAGGTGGATGCAAACGCCGGGGTTCAGGCTCTCAGGACAGACT
GCAGGGTTAATGGGTTCAGTCAAACATGGGAGCAGGCCGTCGTCAAGGGG
CACGGCACGGTGGGATACTTTGAAGTGCTGACATTCTGCTGGGTTAATGG
GTTCAGTCAAACATGGGAGCAGGCCGTCGTCAAGGGGCACGGCACGGTGG
GATACTTTGAAGTGCTGACATTCTGCTGGGAATACGGACTGCATCCGAGT
GTGGCGAACAGCGGCGAGAACAACTTCTTGCTCGCGCACATGTTCGTCGG
GGCATCGCACGCTGCTACAATTAGGGAATACGGACTGCATCCGAGTGTGG
CGAACAGCGGCGAGAACAACTTCTTGCTCGCGCACATGTTCGTCGGGGCA
TCGCACGCTGCTACAATTAGAATCGTGCCCGATGATGAGGAATGTGAGCA
TCCCGAGAATCGTGCCCGATGATGAGGAATGTGAGCATCCCGAG
back to top