mRNA_F-serratus_M_contig790.19186.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig790.19186.1
Unique NamemRNA_F-serratus_M_contig790.19186.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig790.19186.1 vs. uniprot
Match: A0A6H5JAC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC9_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 1.380e-87
Identity = 146/268 (54.48%), Postives = 168/268 (62.69%), Query Frame = 1 
Query:  388 EVGFPGLQVVAPSSGLHGACEVCGAPSIRQLELGRRLCEVC---VNAGELEKPSRVRMP-------------WTVAVTSAREIALCDEHVRTLKWTGAVMLGTSLLLLALPIAAWRGFDFSLVSTLSPWIGIYLPVPLGLLNGVWCLHCAWRGCVRHEGTGSCVSRAGLCGTAWGCSGPSCALNLGLDLGLLITALLAALPAGSSAAGCGYECYVILCFPCAPHGGQGAAACMVLAALGLALGVGTKMWVMTSALRKDPFGRVDFLPW 1143
            +V  PGL+V AP  GLHGACE CG PS+  L  G   CE C   +  GE     + + P               VAVTS+R++AL DE  + L W G  M              WRG  FSL S LSPW+ IYLP+PLG LNG W +HCA  G +RH  TGSC SR G+CGTAWGCSGPSCALNLGLDLGLLITA+LAALPAG+SA GC Y C+ +LCFPCAP GG+G AA +VL ALGLA   G KMW+M  AL   P    DFLPW
Sbjct:   72 KVEVPGLRVHAPWPGLHGACEGCGTPSVSGLGSGPTECEHCHRQIPGGEGGFRGKSKAPAAAAVGGEKAGKAGVVAVTSSRKVALSDERAKALAWAGGAMXXXXXXXXXXXXVTWRGIPFSLFSALSPWLAIYLPIPLGFLNGGWSVHCAKSGHIRHHSTGSCASRGGMCGTAWGCSGPSCALNLGLDLGLLITAVLAALPAGASARGCDYSCFWLLCFPCAPGGGEGMAAALVLTALGLAFATGFKMWIMAPALVSGPNSEQDFLPW 339
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig790.19186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAC9_9PHAE1.380e-8754.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig790contigF-serratus_M_contig790:145345..147751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_003750.1
Exons2
Model size1492
Cds size939
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig790.19186.1prot_F-serratus_M_contig790.19186.1Fucus serratus malepolypeptideF-serratus_M_contig790 145691..147544 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932350.4645116-UTR-F-serratus_M_contig790:145344..1456901622932350.4645116-UTR-F-serratus_M_contig790:145344..145690Fucus serratus maleUTRF-serratus_M_contig790 145345..145690 -
1690964265.7357585-UTR-F-serratus_M_contig790:145344..1456901690964265.7357585-UTR-F-serratus_M_contig790:145344..145690Fucus serratus maleUTRF-serratus_M_contig790 145345..145690 -
1622932350.5473447-UTR-F-serratus_M_contig790:147544..1477511622932350.5473447-UTR-F-serratus_M_contig790:147544..147751Fucus serratus maleUTRF-serratus_M_contig790 147545..147751 -
1690964265.7794697-UTR-F-serratus_M_contig790:147544..1477511690964265.7794697-UTR-F-serratus_M_contig790:147544..147751Fucus serratus maleUTRF-serratus_M_contig790 147545..147751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932350.5103383-CDS-F-serratus_M_contig790:145690..1461531622932350.5103383-CDS-F-serratus_M_contig790:145690..146153Fucus serratus maleCDSF-serratus_M_contig790 145691..146153 -
1690964265.7502468-CDS-F-serratus_M_contig790:145690..1461531690964265.7502468-CDS-F-serratus_M_contig790:145690..146153Fucus serratus maleCDSF-serratus_M_contig790 145691..146153 -
1622932350.527502-CDS-F-serratus_M_contig790:147068..1475441622932350.527502-CDS-F-serratus_M_contig790:147068..147544Fucus serratus maleCDSF-serratus_M_contig790 147069..147544 -
1690964265.7668867-CDS-F-serratus_M_contig790:147068..1475441690964265.7668867-CDS-F-serratus_M_contig790:147068..147544Fucus serratus maleCDSF-serratus_M_contig790 147069..147544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig790.19186.1

>prot_F-serratus_M_contig790.19186.1 ID=prot_F-serratus_M_contig790.19186.1|Name=mRNA_F-serratus_M_contig790.19186.1|organism=Fucus serratus male|type=polypeptide|length=313bp
MWLSKVRVYSAQSVAIHGDLPEGEAREAYRTTPQVTIGSRGTSGDALHRG
DSEQPPLPGREVGFPGLQVVAPSSGLHGACEVCGAPSIRQLELGRRLCEV
CVNAGELEKPSRVRMPWTVAVTSAREIALCDEHVRTLKWTGAVMLGTSLL
LLALPIAAWRGFDFSLVSTLSPWIGIYLPVPLGLLNGVWCLHCAWRGCVR
HEGTGSCVSRAGLCGTAWGCSGPSCALNLGLDLGLLITALLAALPAGSSA
AGCGYECYVILCFPCAPHGGQGAAACMVLAALGLALGVGTKMWVMTSALR
KDPFGRVDFLPW*
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mRNA from alignment at F-serratus_M_contig790:145345..147751-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig790.19186.1 ID=mRNA_F-serratus_M_contig790.19186.1|Name=mRNA_F-serratus_M_contig790.19186.1|organism=Fucus serratus male|type=mRNA|length=2407bp|location=Sequence derived from alignment at F-serratus_M_contig790:145345..147751- (Fucus serratus male)
GCCGAGACTTGCCGAAAAACACGAAGTGTCGTTTCTCGTGTGTGCTTCGT
TCCTTCTTTCCAAATCCATCAAAAACGCGGTATAGAACGTGGCTTCAAGC
CAGTGGGTTCTCTATAATTCTTGTCCAGGAGTCAAAAGCGTTAGTATTAT
ACCAGGGTAGTAGTTGTAGCGAAGCAAAACCGACCCATCCACAGACTTCC
ACGCAGTATGTGGTTGAGCAAGGTGAGAGTATATTCCGCGCAGTCGGTCG
CGATTCACGGTGATCTCCCAGAGGGAGAAGCGAGAGAGGCCTACAGGACC
ACCCCACAGGTCACGATCGGAAGCAGGGGCACGTCCGGGGACGCTTTGCA
CCGAGGCGACTCCGAACAGCCTCCGCTTCCGGGACGAGAGGTCGGCTTTC
CCGGGTTGCAAGTGGTTGCACCGTCTTCAGGACTTCATGGCGCGTGCGAG
GTGTGCGGCGCCCCGAGTATCAGGCAGCTGGAGCTTGGCCGTCGGCTGTG
CGAGGTCTGTGTGAACGCGGGAGAGTTAGAGAAGCCTTCTAGGGTGAGAA
TGCCATGGACTGTTGCGGTGACATCAGCTCGAGAGATTGCTCTATGTGAC
GAGCACGTGCGAACGCTGAAGTGGACGGGGGCTGTGATGCTAGGGACGTC
GCTGTTGCTGCTGGCGCTGCCGATCGCTGCCTGGTGGGTGCTCTTGCCCT
CCGCTAAATTACCCGACTAGCGTGCTGTAAAGTAACTTGCCTTTGAGAAC
TTGTGAGTTGAATTGTACTGCGTGGATGACAATGAAAGCATTGGACAGAG
ATGGTGCTGCCGACAAGGATTATTTTTGATTGAATTGATTGGATGTGCGC
GGCGACATGGACGGGCAACGCTCTCTTCAGCAGTATGCGCTCCTGGGGTG
TCGAGCGCGACAAAATATCAACTGGTGTTTGTAGTGGTGGTCATAATTTG
GTTTTTTAATCAGTTGTACAAAAACATTTTAACAAAATTTAACGACACAA
AAAGGCAACACGCGTCGTCACTCCACCGATCCCTTCCCACCACCCAAAAC
CCCCGATCTGTGACCTACCTCGCCCCAACTTGGATGCTCGAGGCCCATGA
TAATTATGATAGATGAGAGGCATATATTTATAATAAGCTTCATGTGGAGC
CTTATGGCATGGCGACGTAAAGATAAAAGATAAACCCTCTCCTGTTTCGT
GCTGTGAACAACCAGCATTCTACTGCATCTCCGACCCCTCCCTCCCACCC
ACCAAAAGCTGCCACAAAGAAACAAAATATGTCCACCCTCTTTTTCTGAA
GCCTAGAAGAGTCTACAGAGTTGCTGGTGTTTTTGAAAAAAAAATAAGGC
CCAGATATGCCATCTTCGGGCGATTATTTATCTAAAGTTTTGGCCGACAT
TCGCAGGCCCAGCAAAGTCGGATGTTTTGTACCTAGAGGCAATAAAAATC
GCCATTGATTGCTGTGAAGAGAAAATGTCACCACGTTTCGCCTACAGCCC
CGCTCCCCCCCCCGGAGAAACGCCCTCTTCTCTCCTTCCCACCGGCCGCC
ATTGCCCCAAAACATAACCGACCCTCACGCCCCGGTCCACTCCGCCAGGC
GAGGGTTCGACTTTTCCCTGGTCTCCACGCTGTCCCCGTGGATCGGGATC
TACCTTCCCGTGCCTCTCGGACTCCTGAACGGGGTGTGGTGCCTGCACTG
CGCGTGGAGAGGCTGCGTCCGCCACGAGGGCACCGGATCCTGCGTCTCAA
GGGCCGGGCTGTGCGGTACCGCGTGGGGCTGCTCCGGCCCGTCGTGCGCC
CTCAACTTGGGGCTAGATCTCGGGTTGTTGATTACTGCGCTCTTGGCGGC
GCTTCCGGCGGGGTCTTCGGCGGCGGGGTGCGGCTACGAGTGCTACGTGA
TCTTGTGCTTCCCGTGTGCTCCACACGGCGGTCAGGGAGCTGCCGCGTGC
ATGGTTCTGGCGGCGCTCGGGCTAGCGCTTGGCGTGGGCACGAAGATGTG
GGTCATGACGTCTGCGCTGCGAAAGGACCCCTTCGGGAGGGTCGATTTCT
TGCCCTGGTGAAAACGATTTGTTGTCGCTGTTTGTTAGCGCGAGGGATGC
GATTGAATTTTTTTCCGGGCCAGGTTTACCTTGACAACAGAGGGCGCCGT
TTGCTCTCGAGAGGAATACTTTCATGTGGGCGGAAGTTGCTGCAGGCTGT
TTCTGTGCAGACGACAAATGGCCATTTCAGTCGAAATCGTTTCCACGAGT
AAGGGAGTTGTTAGAGATTTTTACGCCAAACAAGACAAGTAGGTTCAAAG
GTCAAGACCCCAACGCTCCCCCCTTTTTTTTGCAAACAAAAGGGTATAAG
CCCAGCCCGCAGACTTTAACGCTTTTGATAAAGTACTTTTTGACATTCTC
CGGACGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig790:145345..147751-

>mRNA_F-serratus_M_contig790.19186.1 ID=mRNA_F-serratus_M_contig790.19186.1|Name=mRNA_F-serratus_M_contig790.19186.1|organism=Fucus serratus male|type=CDS|length=1878bp|location=Sequence derived from alignment at F-serratus_M_contig790:145345..147751- (Fucus serratus male)
ATGTGGTTGAGCAAGGTGAGAGTATATTCCGCGCAGTCGGTCGCGATTCA
CGGTGATCTCCCAGAGGGAGAAGCGAGAGAGGCCTACAGGACCACCCCAC
AGGTCACGATCGGAAGCAGGGGCACGTCCGGGGACGCTTTGCACCGAGGC
GACTCCGAACAGCCTCCGCTTCCGGGACGAGAGGTCGGCTTTCCCGGGTT
GCAAGTGGTTGCACCGTCTTCAGGACTTCATGGCGCGTGCGAGGTGTGCG
GCGCCCCGAGTATCAGGCAGCTGGAGCTTGGCCGTCGGCTGTGCGAGGTC
TGTGTGAACGCGGGAGAGTTAGAGAAGCCTTCTAGGGTGAGAATGCCATG
GACTGTTGCGGTGACATCAGCTCGAGAGATTGCTCTATGTGACGAGCACG
TGCGAACGCTGAAGTGGACGGGGGCTGTGATGCTAGGGACGTCGCTGTTG
CTGCTGGCGCTGCCGATCGCTGCCTGATGTGGTTGAGCAAGGTGAGAGTA
TATTCCGCGCAGTCGGTCGCGATTCACGGTGATCTCCCAGAGGGAGAAGC
GAGAGAGGCCTACAGGACCACCCCACAGGTCACGATCGGAAGCAGGGGCA
CGTCCGGGGACGCTTTGCACCGAGGCGACTCCGAACAGCCTCCGCTTCCG
GGACGAGAGGTCGGCTTTCCCGGGTTGCAAGTGGTTGCACCGTCTTCAGG
ACTTCATGGCGCGTGCGAGGTGTGCGGCGCCCCGAGTATCAGGCAGCTGG
AGCTTGGCCGTCGGCTGTGCGAGGTCTGTGTGAACGCGGGAGAGTTAGAG
AAGCCTTCTAGGGTGAGAATGCCATGGACTGTTGCGGTGACATCAGCTCG
AGAGATTGCTCTATGTGACGAGCACGTGCGAACGCTGAAGTGGACGGGGG
CTGTGATGCTAGGGACGTCGCTGTTGCTGCTGGCGCTGCCGATCGCTGCC
TGGCGAGGGTTCGACTTTTCCCTGGTCTCCACGCTGTCCCCGTGGATCGG
GATCTACCTTCCCGTGCCTCTCGGACTCCTGAACGGGGTGTGGTGCCTGC
ACTGCGCGTGGAGAGGCTGCGTCCGCCACGAGGGCACCGGATCCTGCGTC
TCAAGGGCCGGGCTGTGCGGTACCGCGTGGGGCTGCTCCGGCCCGTCGTG
CGCCCTCAACTTGGGGCTAGATCTCGGGTTGTTGATTACTGCGCTCTTGG
CGGCGCTTCCGGCGGGGTCTTCGGCGGCGGGGTGCGGCTACGAGTGCTAC
GTGATCTTGTGCTTCCCGTGTGCTCCACACGGCGGTCAGGGAGCTGCCGC
GTGCATGGTTCTGGCGGCGCTCGGGCTAGCGCTTGGCGTGGGCACGAAGA
TGTGGGTCATGACGTCTGCGCTGCGAAAGGACCCCTTCGGGAGGGTCGAT
TTCTTGCCCTGGTGAGCGAGGGTTCGACTTTTCCCTGGTCTCCACGCTGT
CCCCGTGGATCGGGATCTACCTTCCCGTGCCTCTCGGACTCCTGAACGGG
GTGTGGTGCCTGCACTGCGCGTGGAGAGGCTGCGTCCGCCACGAGGGCAC
CGGATCCTGCGTCTCAAGGGCCGGGCTGTGCGGTACCGCGTGGGGCTGCT
CCGGCCCGTCGTGCGCCCTCAACTTGGGGCTAGATCTCGGGTTGTTGATT
ACTGCGCTCTTGGCGGCGCTTCCGGCGGGGTCTTCGGCGGCGGGGTGCGG
CTACGAGTGCTACGTGATCTTGTGCTTCCCGTGTGCTCCACACGGCGGTC
AGGGAGCTGCCGCGTGCATGGTTCTGGCGGCGCTCGGGCTAGCGCTTGGC
GTGGGCACGAAGATGTGGGTCATGACGTCTGCGCTGCGAAAGGACCCCTT
CGGGAGGGTCGATTTCTTGCCCTGGTGA
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