mRNA_F-serratus_M_contig790.19178.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 108 bits (270), Expect = 9.590e-25 Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 3
Query: 6 MCSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAIFGATGQACSNGVDGVMSADASVCCASDCEVCGEEACSTFSYLGAGANXXXXXXXXXFGELCESTGEAPCVI 413
+CSNGIPG+++ N ACC+A CGTCGG GC+ G L E++CC SEI DFG C APC + CSNG+ G+ + +A CC ++C CG C+ + G G + FGELC T EAPCV+
Sbjct: 2691 VCSNGIPGIQTGN--ACCLAECGTCGGRGCAEYG-GGLGEDNCCQSEIEDFGELCSVTMEAPCVVD----DVCSNGIPGIQTGNA--CCLAECGTCGGRGCAEYGG-GLGEDNCCQSEIEDFGELCSVTMEAPCVV 2816
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 103 bits (258), Expect = 3.910e-23 Identity = 60/136 (44.12%), Postives = 76/136 (55.88%), Query Frame = 3
Query: 6 MCSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAIFGATGQACSNGVDGVMSADASVCCASDCEVCGEEACSTFSYLGAGANXXXXXXXXXFGELCESTGEAPCVI 413
MCSNGIPG++S N ACC+A CG CGG GC+ +G L E++CC SEI DFG C APC + CSNG+ G+ S +A CC ++C CG C+ G G + FGELC APCV+
Sbjct: 1575 MCSNGIPGIQSGN--ACCLAECGGCGGSGCAQLG-GGLGEDNCCQSEIEDFGELCSVKMAAPCVVD----DMCSNGIPGIQSGNA--CCLAECGGCGGSGCAQLGG-GLGEDNCCQSEIEDFGELCSVKMAAPCVV 1700
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: A0A6H5L879_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L879_9PHAE) HSP 1 Score: 100 bits (248), Expect = 6.510e-22 Identity = 61/144 (42.36%), Postives = 79/144 (54.86%), Query Frame = 3
Query: 9 CSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLP-DLDEEDCCVSEIADFGMPCDTAGVAPCAIFGAT----GQACSN--GVDGVMSADASVCCASDCEVCGEEACSTFSYLGAGANXXXXXXXXXF--GELCESTGEAPCVI 413
CSNGI G+ES+NG CC A CG CGG C+ + LD+ DCC S+I FG C +APC I A+ G CSN GV+G+ SA+ VCC S+C +CG C T + L AG + G C +G APC++
Sbjct: 52 CSNGIEGIESTNGGVCCPALCGLCGGAACTKAAVDAGLDDGDCCFSDIIRFGASCSENQMAPCIIDDASKASAGNTCSNANGVEGISSANGDVCCPSECGLCGGRDC-TQAALAAGLDDGDCCVSDITKEGVKCSDSGAAPCIV 194
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: D7FHN7_ECTSI (von Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 6.110e-14 Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 3
Query: 9 CSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAIFG 206
C+NG+PG+ES+ G CC A CG CGG GC G EDCC++EI D+G PC G APC + G
Sbjct: 220 CTNGVPGMESAGGEVCCPADCGQCGGVGCGEFG------EDCCITEIMDYGQPCSEIGTAPCYLDG 279
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 4.810e-13 Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 3
Query: 6 MCSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAI 200
+CS GIPG+ESS+G CC C CGGEGCST+GLP+ E CC ++ G+ C + APC +
Sbjct: 675 VCSTGIPGIESSDGTVCCPINCTQCGGEGCSTVGLPEYGAESCCELDVQSAGVSCSVSEEAPCVL 739
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 6.450e-13 Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 3
Query: 6 MCSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAI 200
+CS GI G+ESS+G CC C CGGEGCST+GLP+ E CC S++ G+ C + APC +
Sbjct: 611 VCSTGIRGIESSDGAVCCPLGCTQCGGEGCSTVGLPEYGAESCCQSDVLSAGVSCSVSEEAPCVL 675
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 1.640e-12 Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 3
Query: 9 CSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAIFG 206
C+NG+PG+ES+ G CC A+CG CGG GC G D +CC +EI D+G PC G APC + G
Sbjct: 1177 CTNGVPGVESTMGEVCCPASCGHCGGVGCDERGAAD----ECCTTEIMDYGQPCSVTGTAPCYLDG 1238
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 1.860e-11 Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 3
Query: 9 CSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAIFG 206
C+NG+ G+ES+ G CC A+CG CGG GC G D +CC +EI D+G PC G APC + G
Sbjct: 674 CTNGVAGVESTMGEVCCPASCGHCGGVGCDERGAAD----ECCTTEIMDYGQPCSVTGTAPCYLDG 735
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: A0A6H5JQM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM4_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.380e-10 Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 3
Query: 9 CSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAIFG 206
CSNG+ G+ESSNGLACC CG+CGG GCS P DCC SEI + G C G +PC + G
Sbjct: 170 CSNGVYGIESSNGLACCALTCGSCGGVGCSR--RPG-GSYDCCESEIVEEGEACAATGASPCYMDG 232
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Match: D8LSQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ5_ECTSI) HSP 1 Score: 63.9 bits (154), Expect = 3.770e-9 Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 3
Query: 6 MCSNGIPGLE--SSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADFGMPCDTAGVAPCAI 200
+CSN + G+E + NG+ CC A CG CGGEGC ++ P LD +CC++ + + C AG APC I
Sbjct: 43 VCSNSMNGIEGINENGVVCCTAECGQCGGEGCGSV--PGLDNTNCCINGVLNNQELCSVAGAAPCVI 107 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig790.19178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig790.19178.1 >prot_F-serratus_M_contig790.19178.1 ID=prot_F-serratus_M_contig790.19178.1|Name=mRNA_F-serratus_M_contig790.19178.1|organism=Fucus serratus male|type=polypeptide|length=137bp MCSNGIPGLESSNGLACCVAACGTCGGEGCSTIGLPDLDEEDCCVSEIADback to top mRNA from alignment at F-serratus_M_contig790:21147..21759- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig790.19178.1 ID=mRNA_F-serratus_M_contig790.19178.1|Name=mRNA_F-serratus_M_contig790.19178.1|organism=Fucus serratus male|type=mRNA|length=613bp|location=Sequence derived from alignment at F-serratus_M_contig790:21147..21759- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig790:21147..21759- >mRNA_F-serratus_M_contig790.19178.1 ID=mRNA_F-serratus_M_contig790.19178.1|Name=mRNA_F-serratus_M_contig790.19178.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig790:21147..21759- (Fucus serratus male)back to top |