mRNA_F-serratus_M_contig790.19184.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig790.19184.1
Unique NamemRNA_F-serratus_M_contig790.19184.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig790.19184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig790contigF-serratus_M_contig790:118662..119162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932349.0671623-CDS-F-serratus_M_contig790:118661..1190451622932349.0671623-CDS-F-serratus_M_contig790:118661..119045Fucus serratus maleCDSF-serratus_M_contig790 118662..119045 +
1690964265.2019107-CDS-F-serratus_M_contig790:118661..1190451690964265.2019107-CDS-F-serratus_M_contig790:118661..119045Fucus serratus maleCDSF-serratus_M_contig790 118662..119045 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932349.085832-UTR-F-serratus_M_contig790:119045..1191621622932349.085832-UTR-F-serratus_M_contig790:119045..119162Fucus serratus maleUTRF-serratus_M_contig790 119046..119162 +
1690964265.2160969-UTR-F-serratus_M_contig790:119045..1191621690964265.2160969-UTR-F-serratus_M_contig790:119045..119162Fucus serratus maleUTRF-serratus_M_contig790 119046..119162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig790.19184.1prot_F-serratus_M_contig790.19184.1Fucus serratus malepolypeptideF-serratus_M_contig790 118662..119045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig790.19184.1

>prot_F-serratus_M_contig790.19184.1 ID=prot_F-serratus_M_contig790.19184.1|Name=mRNA_F-serratus_M_contig790.19184.1|organism=Fucus serratus male|type=polypeptide|length=128bp
SSDEKPLGVRCGGSNGRCESRSNFTRESVYPSGGERSKVCGRQVATCYTS
PLVSKHRGCRMGAWVVEEGDARSEELTVGRSKCLARAQRPVTLGESWGAA
GGARSPGDGRGRSLKLLSLRRLRCRCR*
back to top

mRNA from alignment at F-serratus_M_contig790:118662..119162+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig790.19184.1 ID=mRNA_F-serratus_M_contig790.19184.1|Name=mRNA_F-serratus_M_contig790.19184.1|organism=Fucus serratus male|type=mRNA|length=501bp|location=Sequence derived from alignment at F-serratus_M_contig790:118662..119162+ (Fucus serratus male)
TCCTCCGATGAGAAACCGCTCGGAGTCAGATGTGGGGGTTCCAACGGGCG
CTGTGAATCAAGATCCAATTTCACCAGAGAAAGCGTGTATCCTTCAGGCG
GAGAGAGGTCGAAAGTATGCGGCCGTCAAGTAGCCACGTGCTATACCTCA
CCCCTCGTCTCAAAACACCGCGGTTGCCGTATGGGTGCGTGGGTAGTCGA
GGAGGGAGACGCAAGGTCGGAGGAACTCACGGTAGGGAGATCGAAGTGCC
TCGCACGCGCGCAGCGGCCGGTAACACTTGGAGAATCATGGGGTGCGGCG
GGTGGTGCGAGGTCTCCGGGTGACGGACGCGGGAGAAGCTTGAAGCTCTT
GAGTCTGCGTCGTCTTCGATGCCGTTGTAGATAGCTATCGATCGCCCGTG
CGTGACTATGGTACTCGGCGTAGAGTGGAGTTATCTACTGCACCTATTAA
TACTGCTCTCCAGTACTTCGACGATATGGAAATTTGCTGTCATGAGGAAG
G
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig790:118662..119162+

>mRNA_F-serratus_M_contig790.19184.1 ID=mRNA_F-serratus_M_contig790.19184.1|Name=mRNA_F-serratus_M_contig790.19184.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig790:118662..119162+ (Fucus serratus male)
TCCTCCGATGAGAAACCGCTCGGAGTCAGATGTGGGGGTTCCAACGGGCG
CTGTGAATCAAGATCCAATTTCACCAGAGAAAGCGTGTATCCTTCAGGCG
GAGAGAGGTCGAAAGTATGCGGCCGTCAAGTAGCCACGTGCTATACCTCA
CCCCTCGTCTCAAAACACCGCGGTTGCCGTATGGGTGCGTGGGTAGTCGA
GGAGGGAGACGCAAGGTCGGAGGAACTCACGGTAGGGAGATCGAAGTGCC
TCGCACGCGCGCAGCGGCCGGTAACACTTGGAGAATCATGGGGTGCGGCG
GGTGGTGCGAGGTCTCCGGGTGACGGACGCGGGAGAAGCTTGAAGCTCTT
GAGTCTGCGTCGTCTTCGATGCCGTTGTAGATAGTCCTCCGATGAGAAAC
CGCTCGGAGTCAGATGTGGGGGTTCCAACGGGCGCTGTGAATCAAGATCC
AATTTCACCAGAGAAAGCGTGTATCCTTCAGGCGGAGAGAGGTCGAAAGT
ATGCGGCCGTCAAGTAGCCACGTGCTATACCTCACCCCTCGTCTCAAAAC
ACCGCGGTTGCCGTATGGGTGCGTGGGTAGTCGAGGAGGGAGACGCAAGG
TCGGAGGAACTCACGGTAGGGAGATCGAAGTGCCTCGCACGCGCGCAGCG
GCCGGTAACACTTGGAGAATCATGGGGTGCGGCGGGTGGTGCGAGGTCTC
CGGGTGACGGACGCGGGAGAAGCTTGAAGCTCTTGAGTCTGCGTCGTCTT
CGATGCCGTTGTAGATAG
back to top