mRNA_F-serratus_M_contig790.19192.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig790.19192.1
Unique NamemRNA_F-serratus_M_contig790.19192.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig790.19192.1 vs. uniprot
Match: A0A6H5JF13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF13_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.390e-29
Identity = 213/697 (30.56%), Postives = 287/697 (41.18%), Query Frame = 2 
Query:   14 SMTPLREGHDRKYHVFVAPGPSYINETGASPESPYVGSSFSYIVPYGGDGRLPSIAAHDIGAVGVGREGDRDRAGGRVYVIIINAVDTFYALEVTLHMEENDPPPDPLSQPRPPSAHVKFTMRPSPIKQFPPITGLAESLDGREPKGSLVSEKTSVVCVDAWTQTAAPNL-DGVGVSDQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNDIHNLDQNSTEYFIVNDSTKTLIHNREVAAASPQTVTADP----------------DGGDISDQISTENIYSFNASTQTSMGDLTQTPKEKHYAADVSTKGPRTNRDDIEDSSGSSGFDPSSSAEWWACGESLPMAELIKVRPQPCRGGSSVPIVGSTE----ASADAATSTVCSSASETCDAPGRRAPRRALASIYTSRQRVFDIEIFISKLLREPWALPGELTVAPRNH----------------------GVSTGKGVGER---NAGSGGRS------EEKGELVSDDCEGW-VNFPV--ANDYHCITIGLQDGGRRALLSLVVNV--------GRRHGLRGNDQKRRH----------------------RVQEEQLMGYLLALDLRNGEVTVLGRVSSKENTPRKCSLMCEALVRSFRRRRDDPL------DPPGHMVTNEPLLQGSPLMGLVNPVFPVAIVAE 1831
            S   ++E  DR YHVFVAPGPSY+    AS E+P+VG++FSYIVP  G   +PSIAAHD+G V    +G       RVYVI++NAVD    +EV LH E          Q  PPS        P+ +    P+ G   S         L  + T  +      Q ++ +  DG G     XXXXXXXXXXXXXXXXXXX                             D+ ++    T         +     R   A S    TA+P                +GG+ ++  + E     ++ ++ + GD             VS+          +  S SSG D    A     G S    E  +V         +V  VG  E     +  A+             + GRR  RRA AS   SRQRV D+E+FIS+LL    A P   T  P                          V++G   GE      GSGG +      +  G +   D +G+  N P   A DYHC+T GL+DGGR  LLSLVV V         +R G RG+ ++ R                        V+   L+ Y+L LDL +GEV VLG  S +    R+C+ MCE + R  R     P+      D PG  ++N  + QG  +  + NPV+PVAIV E
Sbjct:  120 SRVEMQEDEDRVYHVFVAPGPSYLAAVNASAETPFVGAAFSYIVPGSGGAPVPSIAAHDVGGV----DGAAGAGEERVYVIVLNAVDAIRVVEVRLHTEG-------AGQASPPSPSPGGGKCPARV----PVGGRRLS--------PLPFDTTFTIRPPEPLQASSKSRGDGAGGRAXXXXXXXXXXXXXXXXXXXXXADSLSLWWACGR-----------------DLPSIPLVGTH--------RVFPFRRRGPATSLPAATAEPALAATARGAGQLRSRREGGETAEPAA-ELPSGGSSISRPTEGDADXXXXXXXXXXRVSS----------DSGSSSSGSDRGLPAGRGGIG-SGDRTEAERV---------AVAGVGGAEEGRHTAEPASAXXXXXXXXXXXXSLGRR--RRAYASSDKSRQRVLDLEVFISQLLLRREAFPDSKTPHPSRSPPLPPXXXLESKPTEAKTVAAAAVTSGDVGGESAYAGGGSGGDASRAEGADSNGGVGEGDADGFSANAPSVHATDYHCVTAGLRDGGRGVLLSLVVKVMYTGPRRKRKRGGGRGDGREERGGAKTXXXXXTGTRNGSGGDAGAAVEGPFLVSYILDLDLESGEVAVLG--SGRSEGRRRCASMCEKMARCLRYHDAAPVIDDFHVDRPGRRLSNTAVFQGRSVGAITNPVYPVAIVME 743
[Close]
BLAST of mRNA_F-serratus_M_contig790.19192.1 vs. uniprot
Match: D8LIF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF3_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 5.190e-18
Identity = 51/99 (51.52%), Postives = 65/99 (65.66%), Query Frame = 2 
Query:   14 SMTPLREGHDRKYHVFVAPGPSYINETGASPESPYVGSSFSYIVPYGGDGRLPSIAAHDIGAVGVGREGDRDRAGGRVYVIIINAVDTFYALEVTLHME 310
            S   ++E  DR YHVFVAPGPSY+    AS E+P+VG++FSYIVP  G   +PSIAAHD+G V    +G       RVY+I++NAVD    +EV LH E
Sbjct:  188 SRVEMQEDEDRVYHVFVAPGPSYLAAVNASAETPFVGAAFSYIVPGSGGAPVPSIAAHDVGCV----DGAAGAGEERVYMIVLNAVDAIRVVEVRLHTE 282
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig790.19192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JF13_9PHAE3.390e-2930.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIF3_ECTSI5.190e-1851.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig790contigF-serratus_M_contig790:346138..357161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size2538
Cds size1824
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig790.19192.1prot_F-serratus_M_contig790.19192.1Fucus serratus malepolypeptideF-serratus_M_contig790 346836..357145 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932348.7891169-UTR-F-serratus_M_contig790:346137..3468351622932348.7891169-UTR-F-serratus_M_contig790:346137..346835Fucus serratus maleUTRF-serratus_M_contig790 346138..346835 -
1690964265.0954683-UTR-F-serratus_M_contig790:346137..3468351690964265.0954683-UTR-F-serratus_M_contig790:346137..346835Fucus serratus maleUTRF-serratus_M_contig790 346138..346835 -
1622932348.941754-UTR-F-serratus_M_contig790:357145..3571611622932348.941754-UTR-F-serratus_M_contig790:357145..357161Fucus serratus maleUTRF-serratus_M_contig790 357146..357161 -
1690964265.1827502-UTR-F-serratus_M_contig790:357145..3571611690964265.1827502-UTR-F-serratus_M_contig790:357145..357161Fucus serratus maleUTRF-serratus_M_contig790 357146..357161 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932348.8108773-CDS-F-serratus_M_contig790:346835..3469261622932348.8108773-CDS-F-serratus_M_contig790:346835..346926Fucus serratus maleCDSF-serratus_M_contig790 346836..346926 -
1690964265.1102078-CDS-F-serratus_M_contig790:346835..3469261690964265.1102078-CDS-F-serratus_M_contig790:346835..346926Fucus serratus maleCDSF-serratus_M_contig790 346836..346926 -
1622932348.828175-CDS-F-serratus_M_contig790:347895..3480301622932348.828175-CDS-F-serratus_M_contig790:347895..348030Fucus serratus maleCDSF-serratus_M_contig790 347896..348030 -
1690964265.127535-CDS-F-serratus_M_contig790:347895..3480301690964265.127535-CDS-F-serratus_M_contig790:347895..348030Fucus serratus maleCDSF-serratus_M_contig790 347896..348030 -
1622932348.8435037-CDS-F-serratus_M_contig790:348493..3486151622932348.8435037-CDS-F-serratus_M_contig790:348493..348615Fucus serratus maleCDSF-serratus_M_contig790 348494..348615 -
1690964265.138545-CDS-F-serratus_M_contig790:348493..3486151690964265.138545-CDS-F-serratus_M_contig790:348493..348615Fucus serratus maleCDSF-serratus_M_contig790 348494..348615 -
1622932348.870741-CDS-F-serratus_M_contig790:350264..3514271622932348.870741-CDS-F-serratus_M_contig790:350264..351427Fucus serratus maleCDSF-serratus_M_contig790 350265..351427 -
1690964265.1491313-CDS-F-serratus_M_contig790:350264..3514271690964265.1491313-CDS-F-serratus_M_contig790:350264..351427Fucus serratus maleCDSF-serratus_M_contig790 350265..351427 -
1622932348.8923817-CDS-F-serratus_M_contig790:351737..3517741622932348.8923817-CDS-F-serratus_M_contig790:351737..351774Fucus serratus maleCDSF-serratus_M_contig790 351738..351774 -
1690964265.1597447-CDS-F-serratus_M_contig790:351737..3517741690964265.1597447-CDS-F-serratus_M_contig790:351737..351774Fucus serratus maleCDSF-serratus_M_contig790 351738..351774 -
1622932348.9111166-CDS-F-serratus_M_contig790:356869..3571451622932348.9111166-CDS-F-serratus_M_contig790:356869..357145Fucus serratus maleCDSF-serratus_M_contig790 356870..357145 -
1690964265.173218-CDS-F-serratus_M_contig790:356869..3571451690964265.173218-CDS-F-serratus_M_contig790:356869..357145Fucus serratus maleCDSF-serratus_M_contig790 356870..357145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig790.19192.1

>prot_F-serratus_M_contig790.19192.1 ID=prot_F-serratus_M_contig790.19192.1|Name=mRNA_F-serratus_M_contig790.19192.1|organism=Fucus serratus male|type=polypeptide|length=608bp
MTPLREGHDRKYHVFVAPGPSYINETGASPESPYVGSSFSYIVPYGGDGR
LPSIAAHDIGAVGVGREGDRDRAGGRVYVIIINAVDTFYALEVTLHMEEN
DPPPDPLSQPRPPSAHVKFTMRPSPIKQFPPITGLAESLDGREPKGSLVS
EKTSVVCVDAWTQTAAPNLDGVGVSDQTLMADLDNVAVCDQTPTADLNCV
AASGQTQTTDFDGVAASAQTQRADLNDIHNLDQNSTEYFIVNDSTKTLIH
NREVAAASPQTVTADPDGGDISDQISTENIYSFNASTQTSMGDLTQTPKE
KHYAADVSTKGPRTNRDDIEDSSGSSGFDPSSSAEWWACGESLPMAELIK
VRPQPCRGGSSVPIVGSTEASADAATSTVCSSASETCDAPGRRAPRRALA
SIYTSRQRVFDIEIFISKLLREPWALPGELTVAPRNHGVSTGKGVGERNA
GSGGRSEEKGELVSDDCEGWVNFPVANDYHCITIGLQDGGRRALLSLVVN
VGRRHGLRGNDQKRRHRVQEEQLMGYLLALDLRNGEVTVLGRVSSKENTP
RKCSLMCEALVRSFRRRRDDPLDPPGHMVTNEPLLQGSPLMGLVNPVFPV
AIVAEHT*
back to top

mRNA from alignment at F-serratus_M_contig790:346138..357161-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig790.19192.1 ID=mRNA_F-serratus_M_contig790.19192.1|Name=mRNA_F-serratus_M_contig790.19192.1|organism=Fucus serratus male|type=mRNA|length=11024bp|location=Sequence derived from alignment at F-serratus_M_contig790:346138..357161- (Fucus serratus male)
GGTGAATCCTCGCTCGATGACGCCCTTAAGGGAAGGGCACGATCGCAAGT
ACCACGTCTTTGTCGCTCCTGGGCCGTCGTACATCAATGAGACTGGAGCG
TCACCGGAGTCCCCGTATGTGGGGTCGTCGTTTTCCTACATCGTGCCCTA
CGGCGGGGATGGCCGGTTGCCGTCGATCGCCGCCCACGACATTGGAGCCG
TAGGCGTCGGTAGGGAGGGCGATCGAGATCGAGCCGGCGGGCGGGTTTAC
GTCATTATCATCAATGCCGTCGATACGTTTTACGCCCTCGAGGTGAGTGA
ATGTAGGATTTATGCCGTGTGTGCGTGTGTGTGTTTGTGTGTGTATTTAT
GAAATTGCACATAACCACGCAATCTGTCCCTGTTTTCCTAGTCGTTCTAT
GCCATTCGCATTGGTCCTCCGAAGATAGGATCATTGGTACTTACTATGAA
AACCTTTGATCAGACGCGACAAATAGCACACAATATATCTATAGGTACAG
TTCTTACTTAAGCCCTGAGCGCCCTGCGCTTCCCTCCCTGCGTCCTTTCT
ATTTTCTACATCTTTCGGTTTGACATCTACCGAACCAATATTTTTTTGTC
TACGTTTTTTCTCCTTCAGCCCAAGTCTACCCTGTTTTCCACATGACGCC
TATAGCTCTTCTGGGGTTGCATTGAAAGTCTTAGCTTTGACAGGTCTTAC
ACGGAAAGGGTTATGCTGTGGGTGGGGTTCATACAGGCTCAAAATAAACA
CATATGTACCACAGACGAATATAGAACCGGTATATTATTGTCGCAATGGT
GCCCCAGAACACATCGGTAACACAAAAAACCAACACTGCACAATACACTT
GCTCGGGACACTGAAATGGCGGGGCTCTTCACCCTAGACAGAAGCGAAAT
ATTAAACCGGTCCCCTGAGCGGTAACGTAAATCTAGAAAATCCCAAAACT
GCGGTGTTACTCGTGATCAGTGTAATCTGTCCACAGATATCACAACACAT
CGAGCAGACGGCGTATATTAACCTGCACAGGCTAAAGTTGATAACCTATC
TGCAAAACTGAACCACAAAAGCAGAGCGGTTTGCTGCGAAAACCCATCAT
TTTGAAATCCAGCACGCGGAAATAACTGGACGGCGGTAGAGGGTATGGCT
TCCAGCGAATAGGCGAGCCAACCCGACCCTAATATATCGCTAACGCTAAC
CCAGACCCCCCTACCCCAGCTGACCGCAAGATCCCCCTTCATGGCTGGTC
TGTTTTTGTGTGTGTGTTGCACGCGTGCTGCTGCGTATATCGCTAACGCT
AACCCGGACCCCACCACCCCAGCTGACGAATTCATGGCTGGTGCTGGATG
ATAGTACCCTGTGGGCTGGTTTTGTCCCTTCGTCTGTGTTTCAATTACGG
TTGGCCAACCCGACTCTACCCCAGCTGACCGCGATGTCCCAATTCATGAC
TGGCGCTTGGTCGAGGCACCCTGTGGTCTGGTTATGTGTGCGTGCCGCAC
GCGCGCTGCTGTGGCGTGTGTGTGGTGCTGGAGTTGCTTCATGCCTTCTG
AAACTCGACGCCTCGTCTGATGGTCCGCATCCCAGGTCGAGGAAATAGGT
CTGCGTACTCTCGCGACCAGCAGCGGCCTTTGCCATGATGATGGTCTTGT
GTGCGTGCAGGCAGCCACTGCTGCAGCCACTGCACTGAGTTTTTAAAGAA
AAATCAGAACGCGCCTAGACCTTCTGAGCAGTTGGTTTGCGATTAAAAAA
AACAGTTGGTGGGTTTCCGCAGCAAACCGCTCTGCTTTTGTGGTTCAGTT
TTGCAGATAGGTTCTCAACTTTAGCCTGTGCAGGACAATATACGCCGTCT
GCACATCGAGTAACTCTTTCATTGCCCCTGCTCAATGATTGGTCGACATA
TATTTGTCAAATGTACTGGCAGTTATCTCTCTTTATTTTAGGACGCAGTC
TTCAAATGCTTTTATCCTCCACTCTCAAATCATATTGGTATTTCGCTACC
GATCCTTCAACGAAAAAGCATTACCTCACCATTGAAAATCTCGGTGAATA
GTCAACGCATTATACGCCTATAAGAGTTCAGCAGTTGACATACCATCATA
AACTAGTTGTTGATGTACCGTACCGCAACATATGTTTGCGTCATTTCATC
ATTGCCCGACTCAACTACTGTATTTATTCTGGCTCCACAAAACCTCAATG
TTAGGACACACGTCAGGACATATTTACGCCGCTACTGTCTAGTACTTATT
GAAGTTCCTGCGAACCCAAGGATAATATTCGACTCTAGCATTCTCAACAA
AAAGTCGACCTACAGCAAAACGTACCTTTACGACAGTAAGCGGGTCGTAT
GTGGGATTCACGTATAACAAAATCCAGTTTTACGTACGCAAAATTTCATA
CTGTAATTGGTATTATACCAGAAAAATTTCATTGACATATTTCTCTCTGT
CATACACGATGAGATATTACATTTTGAAACACGACGATACGATCGAAAAG
TCCAGGATACAAAACTCTAGAAGAATTCCAGGCGAGCAGTTTTCTGTTGC
TGTCTGGGAAGACATTTCAAATGCTGGCAGTATTATATCACTACGGTACT
TGAACCTACGCAAACGGATGCTGTTTTTAGTATTGCAATAGCTGTGCTTA
TTTTTTTTCTATATCACAGTGGTTCAGCACTACGTACGACGTTCTCCAAT
ATTGTTTTGAGATTACTTACTAGTCCATATGACCAGCTTGTTCGAGAATT
ACTTATACCTAAACAAATCACGAGCAAACAGGGTATACCTCAAAAGTAAA
CCAAGATGAAGGTCTTCAAGCGGTTGATTAGCAAGGAGCTGCTTGGTCTT
AGGCAGTACTCTTCATCGATCGGGCTCGCACAGAACGTTCGCCCTGTTCT
TTTCCGATGGAAGTTCTCGTCTCATCTCAGTAGTATTTTTTACCTGCAAA
TATCGAAAAACAAACACGTCAAACAAACAAAATAAACAAACATCCAAAAC
CTAGTTCCTCCCGACAAAAGTATAGCAGTACAGCCGCTGTTTGGCGTGCG
GCGCGTCTTCCCATCATCCTCCAGGATCGAACTGCTTGTGTTGTTCGTGG
CTCAACTTCATCACCTCTTCTTGTTGCCATCCCATCTACAAAGTCACGAT
CTCCTGAAAGGCGGCCAAATGTATTGTTGTTTCTCGGAGTTTCATCCCGA
TAACGGCTTAAAGAAAGATGATTTCGCCCAGCTCCGAGCTACCATCGGCG
TGCGTGAAGCCGTCGACAGCAGCCTGTTGCACTCGCGAGACGCGGCTGTC
CGGGTGCTTCCACCCGCGTACCACCCAATCGTGACTCGAGCATTCTCCGC
TCGGGCTCCATCTTGCCGTCGATATTTTACTCGCCTCCGAAGACCCGTAC
AAATGCTTGAGATTTTTTGTTGTTGTTCTAGATCTGGCCGTCTCCCAACG
ACTAAGGGTCAACAAACGGCGGCGGTGACGGGGATGGTGGGATACTTGAT
GGCGGCAATGTTGGTGGCTGCTGTTTAACTGGCAGCTGGTAATGAGTCTT
GAGAAACATTTTAAGAGTTGGTAAAATGCCCTTCGTTGCCATTTCAGCTC
TTTTTCACAATTTTGGATGGCATTTGGGAGGAACTGGCAGAGGTATCGGT
GGCAGTACCCTTTGGATAATTGTCGACTGCGCAACGATAGCATTTTATCA
GCCAGCCAAGCTTAACCCTGCGCGTCAAGGTTTCCATCAGCATGAAAAGC
CTGATTCTCGTCTCGCGCATCCAAGTCAGTTTCTTTTCCTGCAGTTAACA
AATATAACCATCAAAATCCTTACTATCGTAACTTATCCATTCTGGATTCC
TTACCAAACCTTCTCCCACCAGATTTAAAACGAAGTGTTCTCAAAACTCA
CGCTTTCGTGAAGCACCTTATTCGTCAGGGTTGCCTCCAATCCTAGGCCC
GCGTCCCTTTTGGCGCTGGCGCTGATGCTCGCGCTTTCTTCAGCACTCTT
TCGATCGGTGTTGGCTCAGTTGCTGGCACTGGCGCTCTCCCTAGTGCTCT
CTTGGCCCGGTAGCTCGTCGTCCTCACTCAAACATCCCCCACAAAGCTCT
GTTCTCCTTCTGGAGAGTAAAATTTTAGAAAACCCCCAATTTTTACAAAA
CACAAAACAGCCTCCTGATCATAGCCCTTGCTCCAGACAATCCTGGTACC
ACACCAGTGTGATTAAACATTTCAGCGTTGATAGGTCTTACTCGGGAGGG
CTGATGCTGTGGGTGACGTCGGTGCAGGCTCGAGATGAACACATTTTACA
GACGAATATAAAACCGGTACCTGGTATATTATTATCACATTTGTGCCCCA
AAACCGATTGGTGACACACAAGGCCCCAATACGTCGAGTAACTCTTTTAG
AGTTTGTTGCACTTCTTCCCCTCTCCCCGCCCTGATCCTGTCCCCCCCCT
GTCCCTAGGCCCTGGTCCTCCGCATGGTATGACGGTTTCGCTGGAGCGTC
AGGTCTTGCGGCTGGGACTGTTGGTTACTCGTTGTTGTTGCGCCCCTCTC
GCGTCTTCCGGCCCACCTCGTTTACCATTTCGTCGGTTCCCAGGCTCTCT
TTACCCTCCACCCTCCTGCCCACTCTCGTCCCTGTTCCTGCTCCCGTTTT
CGCCCCCATCCTTGTCCCTGTGTCCATTTCCGTTCTCTTTCTCGTTCCCG
TCCCTGTCCCCGTCACAGTTTACCCCCTCTTGTCCCTGGTGCTCTGTTCT
CCCATCGGTACGACATCGTCGGGCAGGCGCCGAGTCTGGCGCCCGAAGCT
GCTGGCTATCCGCAGGCGCCACCTCCTGTCTACAGAGATAATGCCGCGTG
CGTAATGGTAGTGTGTGTTTGTGTGTGTGTATATTTATGAAATTGCACAT
AATCGCGCAATCCGGCCCTAAGATCGTATCATTCTATGCTACTCGCACTG
GCCCTCCCAAGGGAGGTCGATGATACTTGTTACGAAAACCTCTGAATGTG
TGCATGTGTGTTTATATGAATGCGTCTTTGCATACATGTGTCGATATATC
CACGCCTAAGACCGAATTTGTGTTATCAGTGCCTGTGGGTCTGATTCCGC
CGCGAAGACCGGCAAGCGATCCGCGTCGAGCCTCGCATATGCTGTGCTCC
AAGACTAGGCTTGACTGCAAACGGTTTTGCGGGGAGTGCGGCGTGCCTCC
ACAGTTATATTAGTGTCTCGGTAAGTTGCATTGGCCCACGCCTTATGTTC
GTCGTTCAAGTTTCCTTTCCCTGTTACACATCTAAGTGGCTTCACAACAC
AACCCTAACGGGCCTTGTCGAGCTTAGATTTCAAGTCTAAAATTTGGGCA
AAACACTTGATCGCTGAATTTACGCCCGCCACCCCAGGTGACTCTTCACA
TGGAAGAGAACGATCCTCCACCAGGTGCTTCAGAATTGTTGTATGGCGTA
CGTTTCATACCTTATCTTGGTGTAACGCGCCAGCTGTAGCGGACTGTGCA
GGACTGCTGTACGCGTGATATGCTTAAGTTCTTGATGTAAAGATGCATCC
TACGAAGGACTACGATAGTAATTATCTATGAAATATAGGCACCTCACTCC
TGATCTAAGGAGCCACCTCCCGTCTTTCACTCTTCACACTAATTCGAGTA
TGTAGCACACCGTGTGAATCAAGAATTCGAGCCCCCTTGCCCGAACAACC
CCCCCCCCCCCCCCCCCCCCCCCCCCAAAAAAAGATCCGCTATCCCAGCC
CCGGCCGCCTTCCGCCCACGTCAAGTTCACCATGCGACCGTCGCCAATCA
AGCAGTTTCCGCCAATCACGGGCCTTGCGGAGTCCCTTGACGGGCGTGAA
CCTAAAGGATCTTTGGTCTCGGAAAAAACCTCGGTAGTGTGTGTCGACGC
CTGGACCCAAACCGCTGCACCGAACCTCGACGGTGTCGGAGTCTCGGACC
AAACTCTGATGGCGGACCTCGACAATGTCGCCGTCTGTGACCAGACTCCG
ACCGCAGACCTGAACTGTGTAGCCGCCTCGGGTCAAACGCAGACAACGGA
CTTCGATGGTGTAGCCGCCTCGGCCCAGACGCAAAGAGCGGATCTCAACG
ATATCCACAATTTGGACCAAAACTCGACGGAATACTTCATTGTCAACGAC
TCGACCAAGACCCTTATACATAACCGCGAGGTTGCCGCCGCATCGCCCCA
GACTGTGACAGCGGATCCCGATGGTGGCGACATCTCGGACCAGATCTCGA
CAGAGAATATTTACTCTTTCAATGCCTCGACCCAGACCTCGATGGGAGAC
CTCACTCAAACCCCAAAAGAGAAGCACTACGCTGCAGACGTCTCGACTAA
GGGCCCTAGAACGAACCGCGACGATATCGAAGATTCGAGTGGCTCTAGTG
GTTTCGATCCCAGTTCTTCAGCCGAATGGTGGGCCTGCGGTGAAAGCCTT
CCCATGGCCGAGCTGATCAAAGTCCGACCGCAGCCGTGTCGAGGAGGGTC
CTCGGTGCCGATAGTTGGGTCGACAGAGGCGTCGGCCGATGCAGCAACCT
CTACTGTTTGCTCTTCTGCTTCTGAGACGTGTGACGCACCTGGGCGGCGC
GCTCCTCGAAGAGCGTTGGCGAGCATCTACACGAGCCGACAGCGCGTCTT
CGACATCGAGATTTTTATCTCAAAGCTGCTGCGTGAACCGTGGGCGCTTC
CCGGGGAGCTGACGGTGGCGCCGAGGAATCATGGAGTTTCTACGGGAAAA
GGCGTTGGTGAAAGAAACGCGGGTAGCGGCGGTCGGTCGGAGGAAAAGGG
GGAACTGGTGAGCGATGATTGCGAGGGTTGGGTCAACTTCCCGGTGGCCA
ACGACTACCACTGCATTACGATTGGATTGCAAGACGGCGGACGTCGGGTG
AGAGATGTCTTCTCTTGATTATTCGCGTTGTTCATGGAGCGGACTCGAAT
CCGATATTTTGCCTCGTCCGTTGCGGTCGAAATGTTATCCACCGAATTAT
TAATTTCAGGTTTACCAAGGGATAAATTCCTCTGTTGCGGAAGCTCAACA
GGAGTCGATACCCACCGTCTGATCACTTCCACGAACCCAGATTACTGCCG
CACTCAAAACTATTTGCAATGGCGCATCTCCCCCTTTCACTCCCGCAGCA
CTTCCACAAAGCGGGGATACTCCCGATTTTCCCAATTTTTAGGCGTTTTT
CTACATCCAATCCCATGCTAGACTATTACTTTTATCACACCGGAAGACTC
CCGCGATCCCTGCTTTGTAGGCATCGCTTTTCATGTTTGCCCTCCATCGG
GGATGGTCGAATTCCACTTTCGTACGATTTTTAAGGGCAAGAAGTAAAAT
AACGGTTGCGCCGTCGGTACTTGCCGGAAGTTCCGCCGGGTGCGAAAAGT
AGATTACGCATTCGTATTTTCTAACTACAAACTAGATTCCAACTGACAGG
TACGCGAACGCCCCTAGCCAACAGTTATTATTATTAGTTAGTTAGATCTA
TAGAGTTAGTTAGTTTGTGAGTGAGTTAGTTATAATAGTTCCTTACTCGG
CAGCAAGTACCACTCGATCTGATTCAGGTGTCTTAAGCTAGTGCCGGAGC
AACAAGCCTCTTGTCGAGGGTCGTGAAAGTGGTAATGCTAGCGGCAGCGA
GATCACAACCAATGTAGGCCATACGCCTGTACTAAGCGCAGGAACGCATG
CCCCTGAGCAAGGCCTCCTGGGGGCGCCTTCACTGGGTGCACTGTTTTAG
GATTTACTCGTCTTGTGGGCTATTTCTTATGGCTCTTGGCTTATGGCTAT
ACTTCGCTTTTCGTGCTCGTCTAATACACCCGCTAGCCATGGCAAGAAGA
ACGCGAAAGGCACCGCTGACTAGTCTGTTACAACCCTGATCAGAGTGCGC
AGCGGGAAGCGGCACTAGTAGACTATGACAACGTAGTCAAGTCATACTCG
AACATAACAGTAAAGGGTAACGTGCCAAATCTGTCTCGGCGCAACAGACA
GAAAGGACGTTTGTCAGAGTGATGTGGTTTCGTCGCCAACAGAGTTTTAT
GTATATTGTGCCAAGAGACCCAGGAAAAAATATTTATCTTTCGTTCAGCA
TCTGTTTTAGGATTCTCGGCTCAGATTCAGTGTATACTAAAAATAACACT
TGGTAGAGATTGCTGGGCTGTAAAGGTCCATGTTGCTGTTCATCGCTGTG
ATCGATGAGTCAACTATGCCACCCGTAATGCCTTCCCCACACCATTCCAC
AGTCAAATCGGCACAGTATGATAAGACTTGTCATTGCCATTCGCGATATT
CGCCAACGGTTAATCGAATTGCGTGTGTATCTTCGTTGCACGGTCATTCG
GATTCCATGCTTCCGTGCCCAAAATGCTTTTTCTATCGAGATGAGGCTGA
TCGGGGAACATTTTAATGAAACCAATGCATTTTTATTTTTAAAAAATCCG
CTCTTCACCGAGTTTTTACCTTAGCGGCCCTCTCCTCTGCTAAATCGCTT
TTGATGGGGCTTTCGATGGGGCTGGGTATCGCACGGACGAGCGCAGGCTC
TCCTCTCCCTCGTGGTAAACGTGGGGCGTCGGCACGGATTGAGGGGAAAC
GACCAAAAACGACGCCATCGCGTGCAGGAGGAGCAGCTTATGGGCTATCT
GTTGGCGCTCGACCTCAGGTACAGCAGCTCTGAATAGGGAAGTCGGAAAA
TCCCAGCCACAGCGGTATTAAGAACTGTGATATTGAAAGTAGGGCAAAGC
AGTGCATTTTTCGGGCTCATGGTGTTGTAGACTATACTGGCTTGTTGCAT
GTACTCTGTGTGTCCCTTGCTGTCGCCTGAAAAATGTAGCTGAATTCTGT
GCAGTCAGTCATTCATCAATGCGTGGGTTGGAAGATACAGTTCCGAAGGC
GTTTCGATCTTGTTCAATATTTTTCTTGTTTCTTCAAAAACAAGGCCCAC
GAATCAAAGCCCTCCTACGTTATATTTTCCACACATTTTTTTTCTTCTTC
TATATTTGACAAGAGTACATAAGTACGAAGTTATTCAACCCCAGGATCAA
AATATCTGTCTCTCTCTCTATATATATATGTGTTTGGCTTTCACGGTCGA
TGGCGGGTGTAATGCATTTCACACGTTGCAGGAATGGCGAGGTGACGGTT
TTGGGGAGGGTATCTTCGAAAGAGAACACACCGAGAAAGTGCTCTCTCAT
GTGCGAGGCGCTAGTTCGTTCTTTCCGCCGGCGTCGAGACGATCCCCTGG
ACCCTCCGGGACATATGTGAGCGCTTGTCACACGTAAATATATGGATATA
GATACAGATCTAGCCATGTAGTACGTAGTGTTGTTTCTACACTCATACTT
TTCCCATTTGCATTCAATTTGATTTTTTTTTTTTTGTCGTTTCGTTTCAA
TTTAATCTTTTAGACGTTTCTTTTGCCTGGTAAGAGTACTTTGTGTTGTT
TTATTTTATTTTAATTCTCAAAATGTAGAAGAAAAAAAAAACTTTGGTGT
TATTGGAGATATGATGCGACGTCTCGGCCTCCGGCGGGATTTTATCGCGA
TAAGACCGTAAAGCCAGACTCTTGAGCTAGGGCAGCGCTGGGACGAACAA
GTGCCAACGAAAATAACTTGGAGGGGAAAAGTGCGCAGTGACTACCACTC
CTAACTTATCGTTGGTTGGTGATGCGGACGAAATAGGACAAGAACTCGGG
TTTTTGAGATAATTCCAATACCAAGTGTGTTGAACATACTATTTGTTCGT
GGTGTCTCCGCCCCGAACGTCGCGAGCACATGCTGTACAACAGATTCTGT
ACACAGTAGCTCGAGATGGTGAGAGTTTTGAGCGAGAAGGGTGGGGTACC
AGTCTGAAGGGGCGCTGTCCGGTGTGCGGCTGCAAGCTAAAGACTATGCA
TGCGCGTGTGCATATGCCCCATCACACATTTTTATCTCTTACCTCTACAA
ACAGGGAAGTTGCTTGGACCATCGTCTAGCACTTTAATGAAGGCATCACC
TTTCCAACAGCACTACTGTTGGACTCTATTTCTCCTATAATAGTAGCTTC
TGCCGTCGCTCATGCACCACACGAATCGAGGAACCTTTCATCCCCCCCCC
TTAGCCCTACCCCACCCCACCCCTTCCTGTCGAACATTGAACCATTGTCT
CTTTAGCAACTCCCTCCTGTCCCACCCTTGATTGCCTCTTTTGTTTTCAT
CTCCCACATCCTACACATGATACCTTCGTGAGGAGGGTAACCAACGAGCC
CTTGCTCCAGGGTTCCCCCCTGATGGGGCTCGTCAATCCAGTGTTCCCGG
TGGCGATCGTTGCAGAACACACCTGACGTGACGACACCATAGTAGGGCGT
TCGGACAGAGACGTTCGTGTGTCGATAGAATGTAGTAGTACACACCGTAG
TCGAGTTGTAACCGGTAGCAGGATGATGCCGAAGGGCGCTCGCAATTTTG
ATACGCTCCGAGTTTGTCTATATACGCCTCAATCGCAGTTTCTCGGGGAA
AGAAGGGTTTGAGTGAAACACACTAGAGAAGTAGCTCTAGACTTGTGCCC
GTTTCGGATGTAGAGCTTGTAGATTTTTTTTTGTGAGGACGCTTCCGACT
CTCTTAAAGCAGAAAAATCAAGTCAAGTGGCGTGGAGAGAAGTGGGCTCG
GCACTCCTAAGACGAGTATAGTGTACAGACCTGGTAACCTCTCGGCGGAG
CGCCTTGCTACGTACTGGTACTGGAAACAAGTGCTTCTTGCGATTTATGT
TCATGGCGACACGGTTCGCTTTTCACAAGGATGTCCTCGGCATGACGAGC
TTCCTTCCGACAGCTTTTTTCGCTGTTTGTTTGTGTGTGTGTGCATGTGT
TTATTAGATTGCACATAACCGCGCAATCCGGCCGCGTCACCCTAGTCTAT
ATGCCAATCGCACTGGTTCTCCCAAGGGGAGATTGTTTCTGTTTGGCGGC
ACCCAGGAAGTTAACAACTTGCGAGTGTGTGACGCATTGTGCACGCCGAA
TCCCGTGGCGAGGTATCATGTGCT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig790:346138..357161-

>mRNA_F-serratus_M_contig790.19192.1 ID=mRNA_F-serratus_M_contig790.19192.1|Name=mRNA_F-serratus_M_contig790.19192.1|organism=Fucus serratus male|type=CDS|length=3648bp|location=Sequence derived from alignment at F-serratus_M_contig790:346138..357161- (Fucus serratus male)
ATGACGCCCTTAAGGGAAGGGCACGATCGCAAGTACCACGTCTTTGTCGC
TCCTGGGCCGTCGTACATCAATGAGACTGGAGCGTCACCGGAGTCCCCGT
ATGTGGGGTCGTCGTTTTCCTACATCGTGCCCTACGGCGGGGATGGCCGG
TTGCCGTCGATCGCCGCCCACGACATTGGAGCCGTAGGCGTCGGTAGGGA
GGGCGATCGAGATCGAGCCGGCGGGCGGGTTTACGTCATTATCATCAATG
CCGTCGATACGTTTTACGCCCTCGAGATGACGCCCTTAAGGGAAGGGCAC
GATCGCAAGTACCACGTCTTTGTCGCTCCTGGGCCGTCGTACATCAATGA
GACTGGAGCGTCACCGGAGTCCCCGTATGTGGGGTCGTCGTTTTCCTACA
TCGTGCCCTACGGCGGGGATGGCCGGTTGCCGTCGATCGCCGCCCACGAC
ATTGGAGCCGTAGGCGTCGGTAGGGAGGGCGATCGAGATCGAGCCGGCGG
GCGGGTTTACGTCATTATCATCAATGCCGTCGATACGTTTTACGCCCTCG
AGGTGACTCTTCACATGGAAGAGAACGATCCTCCACCAGGTGACTCTTCA
CATGGAAGAGAACGATCCTCCACCAGATCCGCTATCCCAGCCCCGGCCGC
CTTCCGCCCACGTCAAGTTCACCATGCGACCGTCGCCAATCAAGCAGTTT
CCGCCAATCACGGGCCTTGCGGAGTCCCTTGACGGGCGTGAACCTAAAGG
ATCTTTGGTCTCGGAAAAAACCTCGGTAGTGTGTGTCGACGCCTGGACCC
AAACCGCTGCACCGAACCTCGACGGTGTCGGAGTCTCGGACCAAACTCTG
ATGGCGGACCTCGACAATGTCGCCGTCTGTGACCAGACTCCGACCGCAGA
CCTGAACTGTGTAGCCGCCTCGGGTCAAACGCAGACAACGGACTTCGATG
GTGTAGCCGCCTCGGCCCAGACGCAAAGAGCGGATCTCAACGATATCCAC
AATTTGGACCAAAACTCGACGGAATACTTCATTGTCAACGACTCGACCAA
GACCCTTATACATAACCGCGAGGTTGCCGCCGCATCGCCCCAGACTGTGA
CAGCGGATCCCGATGGTGGCGACATCTCGGACCAGATCTCGACAGAGAAT
ATTTACTCTTTCAATGCCTCGACCCAGACCTCGATGGGAGACCTCACTCA
AACCCCAAAAGAGAAGCACTACGCTGCAGACGTCTCGACTAAGGGCCCTA
GAACGAACCGCGACGATATCGAAGATTCGAGTGGCTCTAGTGGTTTCGAT
CCCAGTTCTTCAGCCGAATGGTGGGCCTGCGGTGAAAGCCTTCCCATGGC
CGAGCTGATCAAAGTCCGACCGCAGCCGTGTCGAGGAGGGTCCTCGGTGC
CGATAGTTGGGTCGACAGAGGCGTCGGCCGATGCAGCAACCTCTACTGTT
TGCTCTTCTGCTTCTGAGACGTGTGACGCACCTGGGCGGCGCGCTCCTCG
AAGAGCGTTGGCGAGCATCTACACGAGCCGACAGCGCGTCTTCGACATCG
AGATTTTTATCTCAAAGCTGCTGCGTGAACCGTGGGCGCTTCCCGGGGAG
CTGACGGTGGCGCCGAGGAATCATGGAGTTTCTACGGGAAAAGGCGTTGG
TGAAAGAAACGCGGGTAGCGGCGGTCGGTCGGAGGAAAAGGGGGAACTGG
TGAGCGATGATTGCGAGGGTTGGGTCAACTTCCCGGTGGCCAACGACTAC
CACTGCATTACGATTGGATTGCAAGACGGCGGACGTCGGATCCGCTATCC
CAGCCCCGGCCGCCTTCCGCCCACGTCAAGTTCACCATGCGACCGTCGCC
AATCAAGCAGTTTCCGCCAATCACGGGCCTTGCGGAGTCCCTTGACGGGC
GTGAACCTAAAGGATCTTTGGTCTCGGAAAAAACCTCGGTAGTGTGTGTC
GACGCCTGGACCCAAACCGCTGCACCGAACCTCGACGGTGTCGGAGTCTC
GGACCAAACTCTGATGGCGGACCTCGACAATGTCGCCGTCTGTGACCAGA
CTCCGACCGCAGACCTGAACTGTGTAGCCGCCTCGGGTCAAACGCAGACA
ACGGACTTCGATGGTGTAGCCGCCTCGGCCCAGACGCAAAGAGCGGATCT
CAACGATATCCACAATTTGGACCAAAACTCGACGGAATACTTCATTGTCA
ACGACTCGACCAAGACCCTTATACATAACCGCGAGGTTGCCGCCGCATCG
CCCCAGACTGTGACAGCGGATCCCGATGGTGGCGACATCTCGGACCAGAT
CTCGACAGAGAATATTTACTCTTTCAATGCCTCGACCCAGACCTCGATGG
GAGACCTCACTCAAACCCCAAAAGAGAAGCACTACGCTGCAGACGTCTCG
ACTAAGGGCCCTAGAACGAACCGCGACGATATCGAAGATTCGAGTGGCTC
TAGTGGTTTCGATCCCAGTTCTTCAGCCGAATGGTGGGCCTGCGGTGAAA
GCCTTCCCATGGCCGAGCTGATCAAAGTCCGACCGCAGCCGTGTCGAGGA
GGGTCCTCGGTGCCGATAGTTGGGTCGACAGAGGCGTCGGCCGATGCAGC
AACCTCTACTGTTTGCTCTTCTGCTTCTGAGACGTGTGACGCACCTGGGC
GGCGCGCTCCTCGAAGAGCGTTGGCGAGCATCTACACGAGCCGACAGCGC
GTCTTCGACATCGAGATTTTTATCTCAAAGCTGCTGCGTGAACCGTGGGC
GCTTCCCGGGGAGCTGACGGTGGCGCCGAGGAATCATGGAGTTTCTACGG
GAAAAGGCGTTGGTGAAAGAAACGCGGGTAGCGGCGGTCGGTCGGAGGAA
AAGGGGGAACTGGTGAGCGATGATTGCGAGGGTTGGGTCAACTTCCCGGT
GGCCAACGACTACCACTGCATTACGATTGGATTGCAAGACGGCGGACGTC
GGGCTCTCCTCTCCCTCGTGGTAAACGTGGGGCGTCGGCACGGATTGAGG
GGAAACGACCAAAAACGACGCCATCGCGTGCAGGAGGAGCAGCTTATGGG
CTATCTGTTGGCGCTCGACCTCAGGCTCTCCTCTCCCTCGTGGTAAACGT
GGGGCGTCGGCACGGATTGAGGGGAAACGACCAAAAACGACGCCATCGCG
TGCAGGAGGAGCAGCTTATGGGCTATCTGTTGGCGCTCGACCTCAGGAAT
GGCGAGGTGACGGTTTTGGGGAGGGTATCTTCGAAAGAGAACACACCGAG
AAAGTGCTCTCTCATGTGCGAGGCGCTAGTTCGTTCTTTCCGCCGGCGTC
GAGACGATCCCCTGGACCCTCCGGGACATATGAATGGCGAGGTGACGGTT
TTGGGGAGGGTATCTTCGAAAGAGAACACACCGAGAAAGTGCTCTCTCAT
GTGCGAGGCGCTAGTTCGTTCTTTCCGCCGGCGTCGAGACGATCCCCTGG
ACCCTCCGGGACATATGGTAACCAACGAGCCCTTGCTCCAGGGTTCCCCC
CTGATGGGGCTCGTCAATCCAGTGTTCCCGGTGGCGATCGTTGCAGAACA
CACCTGAGGTAACCAACGAGCCCTTGCTCCAGGGTTCCCCCCTGATGGGG
CTCGTCAATCCAGTGTTCCCGGTGGCGATCGTTGCAGAACACACCTGA
back to top