mRNA_F-serratus_M_contig79.19158.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig79.19158.1
Unique NamemRNA_F-serratus_M_contig79.19158.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig79.19158.1 vs. uniprot
Match: A0A4D9CXW3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXW3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.240e-19
Identity = 53/134 (39.55%), Postives = 75/134 (55.97%), Query Frame = 1 
Query:  358 ARAKPFIGYCHSCRKALPRCYVCMQHIDALNPDMEVGRQ-HQQHQQQPPLGKGGGSPAYSSSNSRGHNRGVRADGGVSRRNHAPGTSRDKWIARCNTCWHVGHAHHFSYWFET-HDTCGVNGCRCKCMSLDSPI 753
            +R KP +  C  CRK LPRC++C+  + ALNP +E+ RQ HQQ +QQ    +GGG P   +      ++G   +  +++     G    +W + C  C H GHAHH   WFE   + CGV GCRC+CM  D+ I
Sbjct:  157 SRQKPLLSCCPECRKPLPRCFLCLLPMGALNPYLELRRQIHQQQRQQQ---RGGGLPRPEA------HQGADEEAALTK---LSGVRFGEWWSWCQACGHGGHAHHVRGWFEGGREVCGVTGCRCRCMQRDTAI 278
[Close]
BLAST of mRNA_F-serratus_M_contig79.19158.1 vs. uniprot
Match: A0A7S3TXM9_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TXM9_EMIHU)

HSP 1 Score: 75.9 bits (185), Expect = 3.840e-13
Identity = 54/175 (30.86%), Postives = 74/175 (42.29%), Query Frame = 1 
Query:  238 RCNFCGKTVGVRDTAGGGDXXXXXXRPKRSSRNQGGGVG----RARAKPFIGYCHSCRKALPRCYVCMQHIDALNP-DMEVGRQHQQHQQQPPLGKGGGSPAYSSSNSRGHNRGVRADGGVSRRNHAPGTSRDKWIARCNTCWHVGHAHHFSYWFETHDTCGVNGCRCKCMSLDS 747
            RC FC  ++    T GG        +  R++  +GGG+      AR       C +C+KALPRC +C+ H+   NP D+            P  G     PA +            ADG       AP +   +W+  C +C H GHA H   WF  H  C V GC C+C  LD+
Sbjct:    7 RCAFCNASL---QTGGG--------QAARAAPKRGGGIAPGPAAARLAARASACPACKKALPRCALCLGHLGCPNPADL------------PEAGSAAPLPAAAED----------ADG------TAPSSGLGRWMVWCQSCRHGGHALHVEQWFARHTVCPVAGCDCQCALLDA 142
[Close]
BLAST of mRNA_F-serratus_M_contig79.19158.1 vs. uniprot
Match: I2CQM1_NANGC (Wd repeat-containing protein mio-b (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQM1_NANGC)

HSP 1 Score: 74.7 bits (182), Expect = 6.060e-13
Identity = 53/161 (32.92%), Postives = 77/161 (47.83%), Query Frame = 1 
Query:  235 LRCNFCGKTVGVRDTAGGGDXXXXXXRPKRSSRNQGGGVGRARAKPFIGYCHSCRKALPRCYVCMQHIDALNPDMEVGRQ-HQQHQQQPPLGKGGGSPAYSSSNSRGHNRGVRADGGVSRRNHAPGTSRDKWIARCNTCWHVGHAHHFSYWFET-HDTCGV 711
            +RCNFC   + +              R +R  R   G    +R KP +  C  CRK LPRC++C+  + ALNP +E+ RQ HQQ +QQ    +GG  P   +      ++G   +  +++     G    +W + C  C H GHAHH   WFE   + CGV
Sbjct:    1 VRCNFCATGINL-------------SRLRRQGRT--GQSWLSRQKPLLSCCPECRKPLPRCFLCLLPMGALNPYLELRRQIHQQQRQQQ---RGGALPRPEA------HQGADEEAALTK---LSGVRFGEWWSWCQACGHGGHAHHVRGWFEGGREVCGV 134
[Close]
BLAST of mRNA_F-serratus_M_contig79.19158.1 vs. uniprot
Match: A0A7M7PAL7_STRPU (zinc_ribbon_16 domain-containing protein n=3 Tax=Echinacea TaxID=7674 RepID=A0A7M7PAL7_STRPU)

HSP 1 Score: 76.3 bits (186), Expect = 1.040e-11
Identity = 48/176 (27.27%), Postives = 73/176 (41.48%), Query Frame = 1 
Query:  220 SRHLRLRCNFCGKTVGVRDTAGGGDXXXXXXRPKRSSRNQGGGVGRARAKPFIGYCHSCRKALPRCYVCMQHIDALNPDMEVGRQHQQHQQQPPLGKGGGSPAYSSSNSRGHNRGVRADGGVSRRNHAPGTSRDKWIARCNTCWHVGHAHHFSYWFETHDTCGVNGCRCKCMSLDS 747
            S+ + + C+FC   +   + A GG                 GG  R   +     C+ CRKALPRC +C+ H+   + + ++  Q + ++   P  K   S                    + R+     T   +W + C +C H GHA H + WF TH  C V  C C+CM LDS
Sbjct:  754 SKQIYISCHFCQSPISPSELAKGGKAGYM------------GGYARGFQQRRSNTCYKCRKALPRCALCLMHMGTRSGESKLSPQQRSYK---PSSKQAASVQP-----------------MMRQ-----TDFGEWFSWCQSCRHGGHADHLTEWFRTHSECPVTSCMCRCMLLDS 892
[Close]
BLAST of mRNA_F-serratus_M_contig79.19158.1 vs. uniprot
Match: A0A3S1BNK4_ELYCH (zinc_ribbon_16 domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1BNK4_ELYCH)

HSP 1 Score: 74.7 bits (182), Expect = 3.360e-11
Identity = 51/183 (27.87%), Postives = 67/183 (36.61%), Query Frame = 1 
Query:  229 LRLRCNFCGKTVG----------VRDTAGGGDXXXXXXRPKRSSRNQGGGVGRARAKPFIGYCHSCRKALPRCYVCMQHIDALNPDMEVGRQHQQHQQQPPLGKGGGSPAYSSSNSRGHNRGVRADGGVSRRNHAPGTSRDKWIARCNTCWHVGHAHHFSYWFETHDTCGVNGCRCKCMSLDS 747
            + + CNFC   +           +  ++GG        RPK               KP I  C SCRKALPRC +C+ H+  L+                    G G+    S        GV+             T    W   C TC H GHA H + WF  H  C V GC CKC++ D+
Sbjct:  729 VHISCNFCSNQISNTQSLMNKDRMMISSGGNQYRGPQSRPKMPHN-----------KPKISCCQSCRKALPRCAICLAHMGTLS--------------------GLGADTSGS--------GVKL------------TEFGAWFTWCQTCRHGGHADHLTQWFSEHSDCPVTGCSCKCIAQDA 860
[Close]
BLAST of mRNA_F-serratus_M_contig79.19158.1 vs. uniprot
Match: A0A6U3VPN8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3VPN8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.390e-11
Identity = 41/125 (32.80%), Postives = 58/125 (46.40%), Query Frame = 1 
Query:  367 KPFIGYCHSCRKALPRCYVCMQHIDALNPDMEVGRQHQQHQQQPPLGKGGGSPAYSSSNSRGHNRGVRADGGVSRRNHAPGTSRDKWIARCNTCWHVGHAHHFSYWFETHDTCGVNGCRCKCMSL 741
            K  +  C SCR+ LP+CY+C+  + ALNP +E+ R HQ+       G+    P    S+                       + ++W   C  C H GHA H + WFE+H  CGV+ C C C SL
Sbjct:  391 KAVLSCCPSCRQTLPKCYICLMPLRALNPYVELKR-HQK-----VTGQTDFPPTKDMSS----------------------LALNEWFTWCQRCKHGGHASHIAAWFESHTHCGVSNCNCACNSL 487
[Close]
BLAST of mRNA_F-serratus_M_contig79.19158.1 vs. uniprot
Match: A0A2T7PAB9_POMCA (zinc_ribbon_16 domain-containing protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PAB9_POMCA)

HSP 1 Score: 74.3 bits (181), Expect = 4.490e-11
Identity = 60/184 (32.61%), Postives = 76/184 (41.30%), Query Frame = 1 
Query:  211 VPPSRHLRLRCNFCGKTVGVRDTAGGGDXXXXXXRP-KRSSRNQGGGVGRARAKPFIGYCHSCRKALPRCYVCMQHIDALNPDMEVGRQHQQHQQQPPLGKGGGSPAYSSSNSRGHNRGVRADGGVSRRNHAPGTSRDKWIARCNTCWHVGHAHHFSYWFETHDTCGVNGCRCKCMSLDSPIVP 759
            VPP   + + CNFCGK+V   +T G          P  R+ + Q       R K  I  C SCRKALPRC +C+  +   +    V  +H              SP                 GG  +      T    W + C TC H GHA H + WF  H  C V GC CKC+ +DSPI P
Sbjct:  733 VPPQ--VFISCNFCGKSV--TNTRGFRMPERNYLPPFSRAPQQQ-------RVK--ISCCPSCRKALPRCAICLCTLGTASA-FGVSGEH--------------SPLQ---------------GGQEKL-----TPFVDWFSWCQTCRHGGHAGHITAWFRDHTDCPVTGCSCKCLMIDSPIKP 868
[Close]
BLAST of mRNA_F-serratus_M_contig79.19158.1 vs. uniprot
Match: A0A2P2IE19_9CRUS (Nuclear pore complex protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2IE19_9CRUS)

HSP 1 Score: 73.2 bits (178), Expect = 6.750e-11
Identity = 53/184 (28.80%), Postives = 79/184 (42.93%), Query Frame = 1 
Query:  211 VPPS--RHLRLRCNFCGKTVGVRDTAGGGDXXXXXXRPKRSSRNQGGGVGRARAKPFIGYCHSCRKALPRCYVCMQHID--ALNPDMEVGRQHQQHQQQPPLGKGGGSPAYSSSNSRGHNRGVRADGGVSRRNHAPGTSR-DKWIARCNTCWHVGHAHHFSYWFETHDTCGVNGCRCKCMSLDS 747
             PPS  +H+ L C++C K++     +           PK               K  +  C  CRK LPRC +C+QH+   +L+PDM   + H    ++  + +   +P +      GH +    DG        PG +    W   C TC H GHA H   WF  H  C V GC+C+C+  D+
Sbjct:  224 TPPSPPQHVLLACSYCMKSIAASPLS----LPPHHSPPKNQLGRMPQHSHHQHNKSKVMSCPHCRKPLPRCALCLQHLGTPSLSPDMHQ-KLHSHKAEKHSIDESSRAPHHLFIP--GHTQARLRDG-------LPGLNPFSNWFTWCQTCRHGGHASHILQWFCEHSECPVTGCKCQCLLQDN 393
[Close]
BLAST of mRNA_F-serratus_M_contig79.19158.1 vs. uniprot
Match: A0A6A7G005_9CRUS (Nuclear pore complex protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G005_9CRUS)

HSP 1 Score: 73.2 bits (178), Expect = 9.880e-11
Identity = 53/184 (28.80%), Postives = 79/184 (42.93%), Query Frame = 1 
Query:  211 VPPS--RHLRLRCNFCGKTVGVRDTAGGGDXXXXXXRPKRSSRNQGGGVGRARAKPFIGYCHSCRKALPRCYVCMQHID--ALNPDMEVGRQHQQHQQQPPLGKGGGSPAYSSSNSRGHNRGVRADGGVSRRNHAPGTSR-DKWIARCNTCWHVGHAHHFSYWFETHDTCGVNGCRCKCMSLDS 747
             PPS  +H+ L C++C K++     +           PK               K  +  C  CRK LPRC +C+QH+   +L+PDM   + H    ++  + +   +P +      GH +    DG        PG +    W   C TC H GHA H   WF  H  C V GC+C+C+  D+
Sbjct:  490 TPPSPPQHVLLACSYCMKSIAASPLS----LPPHHSPPKNQLGRMPQHSHHQHNKSKVMSCPHCRKPLPRCALCLQHLGTPSLSPDMHQ-KLHSHKAEKHSIDESSRAPHHLFIP--GHTQARLRDG-------LPGLNPFSNWFTWCQTCRHGGHASHILQWFCEHSECPVTGCKCQCLLQDN 659
[Close]
BLAST of mRNA_F-serratus_M_contig79.19158.1 vs. uniprot
Match: R1EQ03_EMIHU (zinc_ribbon_16 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EQ03_EMIHU)

HSP 1 Score: 72.0 bits (175), Expect = 2.790e-10
Identity = 53/180 (29.44%), Postives = 74/180 (41.11%), Query Frame = 1 
Query:  217 PSRHLRLRCNFCGKTVGVRDTAGGGDXXXXXXRPKRSSRNQGGGVG----RARAKPFIGYCHSCRKALPRCYVCMQHIDALNP-DMEVGRQHQQHQQQPPLGKGGGSPAYSSSNSRGHNRGVRADGGVSRRNHAPGTSRDKWIARCNTCWHVGHAHHFSYWFETHDTCGVNGCRCKCMSL 741
            P+  +  RC FC  ++    T GG        +  R++  +GGG+      AR       C +C+KALPRC +C+ H+   NP D+            P  G     PA +            ADG       AP +   +W+  C +C H GHA H   WF  H  C V GC C+   L
Sbjct:  843 PASQVFARCAFCNASL---QTGGG--------QAARAAPKRGGGIAPGPAAARLAARASACPACKKALPRCALCLGHLGCPNPADL------------PEAGSAAPLPAAAED----------ADG------TAPSSGLGRWMVWCQSCRHGGHALHVEQWFARHTVCPVAGCDCQSTHL 983
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig79.19158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A4D9CXW3_9STRA4.240e-1939.55Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3TXM9_EMIHU3.840e-1330.86Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
I2CQM1_NANGC6.060e-1332.92Wd repeat-containing protein mio-b (Fragment) n=1 ... [more]
A0A7M7PAL7_STRPU1.040e-1127.27zinc_ribbon_16 domain-containing protein n=3 Tax=E... [more]
A0A3S1BNK4_ELYCH3.360e-1127.87zinc_ribbon_16 domain-containing protein n=1 Tax=E... [more]
A0A6U3VPN8_9STRA3.390e-1132.80Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2T7PAB9_POMCA4.490e-1132.61zinc_ribbon_16 domain-containing protein n=2 Tax=P... [more]
A0A2P2IE19_9CRUS6.750e-1128.80Nuclear pore complex protein (Fragment) n=1 Tax=Hi... [more]
A0A6A7G005_9CRUS9.880e-1128.80Nuclear pore complex protein (Fragment) n=1 Tax=Hi... [more]
R1EQ03_EMIHU2.790e-1029.44zinc_ribbon_16 domain-containing protein n=1 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig79contigF-serratus_M_contig79:240547..249136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue4.7e-15
Seed eggNOG ortholog653948.CCA18830
Preferred nameMIOS
KEGG koko:K20407
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001674,GO:0001709,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005773,GO:0005774,GO:0005776,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008361,GO:0009267,GO:0009605,GO:0009653,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010506,GO:0010507,GO:0010564,GO:0010646,GO:0010647,GO:0016020,GO:0016043,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019898,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030054,GO:0030154,GO:0030716,GO:0031090,GO:0031312,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031503,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0034198,GO:0034613,GO:0034629,GO:0034641,GO:0035859,GO:0036211,GO:0040020,GO:0042594,GO:0043073,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044754,GO:0045165,GO:0045793,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051445,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0061630,GO:0061659,GO:0061700,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0070727,GO:0071496,GO:0071704,GO:0071840,GO:0090066,GO:0090304,GO:0097042,GO:0098588,GO:0098805,GO:0098852,GO:0140096,GO:1901360,GO:1901564,GO:1902531,GO:1902533,GO:1903432,GO:1904263,GO:1990928,GO:2000241
EggNOG free text desc.positive regulation of TOR signaling
EggNOG OGsKOG1008@1,KOG1008@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons4
Model size916
Cds size777
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig79.19158.1prot_F-serratus_M_contig79.19158.1Fucus serratus malepolypeptideF-serratus_M_contig79 240547..248998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932345.5857882-CDS-F-serratus_M_contig79:240546..2407851622932345.5857882-CDS-F-serratus_M_contig79:240546..240785Fucus serratus maleCDSF-serratus_M_contig79 240547..240785 +
1690964263.5617547-CDS-F-serratus_M_contig79:240546..2407851690964263.5617547-CDS-F-serratus_M_contig79:240546..240785Fucus serratus maleCDSF-serratus_M_contig79 240547..240785 +
1622932345.6073344-CDS-F-serratus_M_contig79:242496..2426591622932345.6073344-CDS-F-serratus_M_contig79:242496..242659Fucus serratus maleCDSF-serratus_M_contig79 242497..242659 +
1690964263.5786712-CDS-F-serratus_M_contig79:242496..2426591690964263.5786712-CDS-F-serratus_M_contig79:242496..242659Fucus serratus maleCDSF-serratus_M_contig79 242497..242659 +
1622932345.6273751-CDS-F-serratus_M_contig79:245028..2452701622932345.6273751-CDS-F-serratus_M_contig79:245028..245270Fucus serratus maleCDSF-serratus_M_contig79 245029..245270 +
1690964263.5890687-CDS-F-serratus_M_contig79:245028..2452701690964263.5890687-CDS-F-serratus_M_contig79:245028..245270Fucus serratus maleCDSF-serratus_M_contig79 245029..245270 +
1622932345.6451945-CDS-F-serratus_M_contig79:248865..2489981622932345.6451945-CDS-F-serratus_M_contig79:248865..248998Fucus serratus maleCDSF-serratus_M_contig79 248866..248998 +
1690964263.6052659-CDS-F-serratus_M_contig79:248865..2489981690964263.6052659-CDS-F-serratus_M_contig79:248865..248998Fucus serratus maleCDSF-serratus_M_contig79 248866..248998 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932345.664296-UTR-F-serratus_M_contig79:248998..2491361622932345.664296-UTR-F-serratus_M_contig79:248998..249136Fucus serratus maleUTRF-serratus_M_contig79 248999..249136 +
1690964263.6203132-UTR-F-serratus_M_contig79:248998..2491361690964263.6203132-UTR-F-serratus_M_contig79:248998..249136Fucus serratus maleUTRF-serratus_M_contig79 248999..249136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig79.19158.1

>prot_F-serratus_M_contig79.19158.1 ID=prot_F-serratus_M_contig79.19158.1|Name=mRNA_F-serratus_M_contig79.19158.1|organism=Fucus serratus male|type=polypeptide|length=259bp
RLSSPRPGVGLFAQDASPPGRPLGGNPRAEQGEGVRLVESSVDREPWPDN
GGVRAGLTDGGRTYDGFGGGVPPSRHLRLRCNFCGKTVGVRDTAGGGDQA
GAGDRPKRSSRNQGGGVGRARAKPFIGYCHSCRKALPRCYVCMQHIDALN
PDMEVGRQHQQHQQQPPLGKGGGSPAYSSSNSRGHNRGVRADGGVSRRNH
APGTSRDKWIARCNTCWHVGHAHHFSYWFETHDTCGVNGCRCKCMSLDSP
IVPPSISK*
back to top

mRNA from alignment at F-serratus_M_contig79:240547..249136+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig79.19158.1 ID=mRNA_F-serratus_M_contig79.19158.1|Name=mRNA_F-serratus_M_contig79.19158.1|organism=Fucus serratus male|type=mRNA|length=8590bp|location=Sequence derived from alignment at F-serratus_M_contig79:240547..249136+ (Fucus serratus male)
AGACTCTCCTCCCCTCGCCCTGGCGTTGGCCTGTTCGCGCAGGACGCGTC
TCCACCAGGTCGCCCCCTGGGCGGAAATCCGAGGGCCGAGCAGGGCGAGG
GAGTTCGACTGGTGGAGTCGTCGGTCGATCGTGAGCCGTGGCCCGACAAT
GGTGGTGTGCGTGCTGGGCTGACGGACGGGGGCAGGACCTACGACGGTTT
CGGTGGCGGAGTTCCTCCGTCGAGACATCTTCGCCTCAGGTGAGCCTTTT
TGGTTCTTGTGCCGTTGTTGTGTGTTTTGTTTTTGTGTTTTGTTTTGTTG
TCAACACCTATTAAAAACTTGTACACCCCGAGTACGAACAGGGTAGTTCA
CTGACGATTGGAGTTGTAAAGCGAATCGTGGAGGAGACATATAACATACT
GTAACACATGACGTGGGAGAAATCTCCTTGTACTGTTACACGACACTGGC
CTGCTTTAACTGTTTACTTGATGAATGTAAATGTGGGTTTCTTACAAAGG
AGTTGGGTCGCTGTTTTGAGCAAGAGTATGGATCAACCGCGGGTAAGGTT
GCCAATCCTGCTCGGGTTCAGCTGAACAGGGAAAATTTATATTCCCCTGT
CCGCGTTCGCACCCCTGAGAATTTGGTCTTGCGAGACGGGTTCGGCAGTC
CTGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCTGCCTCTCCGAGA
TTGATTTTTGGGTCATATTTCGTCGAATCCTCTCCCCTCGACTCTTTAAC
CTCACGAATCGCTGATTTTCAAGTATAATGCTACTGTCCGCTGAACTCGG
CTTTTCACAACGTTGAAATCGTTTCTATCGGGGGCGTGCTTGTGTACCCT
ATAGAGAGACTTTCAATAGAGACGGAAGATACCGGGGGCGTGCTTGTGTA
CCCTATAGAAAGAGAGACTATCAATAGAGACGGAAGATTGGGCAGCGTGT
TTGTAGCAAGTCGGCAGAGAGTGTGGAGAGGAAAGAAGAAGAAGAAAAAA
AGAGAGAAACAAAAAAAAACTATAAAAAATAAATAGAAACAAAAAACACA
CAGAAAGACTCGTGTCGGGGCGAACCTGATATTTTTTCTTTTCCGTATAC
ACTATAAATCAAGGAGTTTGAACGCTTCCAAGGGATTTCCGGTTCATGTT
TGGGTTTTCAGTCCAGCATATATCGTTTCAGGAAAAAAAAGGAAAAAATG
TGGAAAACAAATTACACATCGATGTAGACTAGGAAAAGCTTAGGCGCGGC
CCATGATTCATTGTACCGGTAACTCTCTCCCCTTAGAGCTAAATATTCGC
CACACGAACTTGAAACCCCGTGATGGGAAATCGCTTAATTTTGTTGTTGG
TTGAAACTTGTCGTTTTCGAAAAATCCGCGAGGCCGCTTCGAGCCTGGTT
TTTTCAAACCACGATTTCGACTGAAAAAAAAACGTCAACTAAAAACAAAA
AACACGAACTAACCACAAAAAGCATCAACTGAAAAAAAAATCATTGAACC
ATAGTTGTGAGTGTAAGCGTAATAGTGGATCTTGGCCGGTCAAGGTGATA
CAACTCAAACTCAGAGTTTAATATTTGGATCTCGCGTGCGAACCCCCTCC
CTCGCTCAAAAAAACCCAACAAGAAACGTTGGACTAAATACCTAAATACA
AAAACATGGAAATATTTTGATATTTTTTTCCCCCTGACTGGGGGTTGCTC
AGAAGGTCTAGACGCGTTCATATTTTTCTTTAAATATAACTTTTTACTAA
TATGTACCAGGTAGTATTTAGCACCGCTTAACGGACGTCGACGTGAAGGG
GGGGGGGGGGGGATTATAAGTCTGAAATCGTGAAATAGCTCCTCGAAAAT
CAAGGATGAAAAACAGCACCCGTTCGTTCTGTCAATACAAAGCTTTCTCG
TATGTAACAAAAGCTTCCAACGCTCTTGGTTGCCATTTTTTTTTTGTAAG
GTGCAACTTCTGCGGGAAGACAGTCGGCGTGAGGGACACGGCGGGCGGAG
GAGACCAGGCGGGGGCAGGAGACCGTCCCAAGCGGTCCAGCCGGAATCAG
GGAGGGGGGGTGGGCAGGGCGAGGGCGAAGCCTTTCATAGGGTACTGTCA
CTCTTGCCGGAAGGTGAGAGAGAGAAGAGATAAAAAAAAGAGTCATATTC
ATGGGGTACTGTCATTCTTGCCGGAAGGTGAGTGATACAGAAAAGTCATA
TTCGTAGGGTACTGTTGTTACCCTTGCCGGAAGGTGGGAAAAATAAGAGT
CATATTCATAGGGAACTGTTACCCTTGCCGGAACGTGGGAAAAGTAAGAG
TCATATTCATAGGGTACTGTTACCCGTGCCGGAAGGTGAGAGGCATAAAA
ATAGTCATATTCATAGGGTACTGTTACCCTTGCCGGAAGGTGAGAGACAT
AGAAGAGTCATATTCATAGAGTACCGTAACGAACCCTTGCCGGAAGGTGA
AAGGGACAAAAGAAGTCTGTTACCCTTGCCGAAAGGTGACAAAGATCAAC
AGTGTTGCCAGAAAGGGCCTGACCAATATTATTGAAAACCACATATTTGT
CCCTCGCGCACGTTATCTCAGACTGCTTCGACGCAGAAGAAGGTACAAAc
tgCTGTATCCCTCTGTATtgCGTCTGtgctCCGAATcgTGCGTCTGTGCT
CCGAATTTCGTGAGTCGAGACCGTTTCTATGGCTTAATATAAAAAAAAGT
ATCTCCTGCAAAAGTCCATGCATGAAAAAAATGCGGCGAGATCAGTCAGG
GACCCATTGCCTCGTGAATATACTAGAATATCCCGACTTTGGTCTTCAAG
AAGTGTGGGCTACGCACGTCGTTCGATGCGACGAAGGCGTAAACATATTT
TCGGAGTATGTTTACGACAGTGGGCGAAGGTATTGTCGCAGGTTACGAGC
TTGTCCTCGAGGAATCGTTATCTTCACTTCTCTATAAAAAACCATATATA
GGCTGAATTTACTCGACACAGACAATTGGTACCGCTGCAGTACACAAACA
TACGTCTTTTTCCAGAAGATCTCTTGTTTTTTTTTTCAATACATTTTTGG
TACGCACGATTTTTACAAGCACACACGCTTTGTTACTCGGACATGTGAGA
GGGTCACCACGACGGAAACGGCTGCCGACGCAATCTCCACGTAGAACATA
TTGCATAGTCCCTTCTATGCCAGTGGTATCTCTAGATTGCGCGTGGTGAC
CCGTAATGGTGGTGCCAAACTGGGGTTTGGCCTAAGTCCTGAGTAACCAC
ACGATCTCATCGCCCGTGGGGAGGTGGGCAAAATGACGCACCAACCACCA
GTAACTCAGACTAACAAAAGCACACAAAGCAAGTTTGATCCTTACCTGTG
GGCCTGTGAAGTCTCCCTACCTCCACGGTCCGGCCGACTGTCTAGTAGCT
CCAGGGCACAACTGCTGCTGTTTCCCAAGGGCGATTGAGAGATGCCATGT
TAGCCTGCATATTATTGCAACCCGGCAACACTGTCAAAGAGTCATATTCA
TAGGGTACTTGCCACTCTTGCCGGAAGGTGAGAGATATAAAAGAGTCGTA
TTCATAGGGTACTTGTCACCCTTGCCGGAAGGTGAGAGTGATGAAAGAGT
CATATACGTAGGGTACTGTTGTTACCCTTGCCGGAAGGTGGGAAATATAA
GAGTTATATTCATAGGGTACTGTTACCCTTGCCGGAAAGTAAGAGGGATA
GAAGAGCCATATGCGTAGGGTACTCTCACTCTGAAAATCCTGAGAGTAGA
TGCTATGCCTTTGGGTGCAAATGCGAGATATTACAGTTGCGATCCGGGGG
GTATTGAATGGCTCGCGGCTGGCGGTATACCGAACCCTCTCTAGCGACTG
CCCTTGTTCGCGTTGCGTGCGTTTTATCAGAGGTTTTCGTAATAAGTTTC
ATTGTTCCCTTAATACCATTCCCCCTACCTTGGGAGGACCAATGCAAGCG
GTATAGAATGGCTATTAATAGGATGACAGGGCCGTATTGCGCGGTCATGT
GCAAATCATAAATAAATACGTACATACATACATGCATACATACTTACATA
CGGCTGCCCGAGCGACCCATGGCGTCAGCGCTCATTGAAGAGCTCAAGAC
CGTGGCTACCGAAGCCAAGAGAAGCCAAGAGTAGAGGGTGTGTCCCCTTC
GTCGTGTCTGATTAAATGTTTTCGTAATAAGTATCATTGATCCCTTAATA
CCATCCTCCCCTTGGGAGGACCAATGCGAGTGGCATAGAATGACTATTAA
TCGGATGACAGGACCCGATTGCGCGGTTATGTGCAATTTAATAAGTACAC
GCATAGACACACACGGAGAACAATTCGAATGACATGCAATATAATGTATT
TTGACGACAAGGCCGGATGGCGCGGTGATATAAATATTACAACAAATACA
CACACAAACATCTTGTTTCGTTGTTGTTGATGTATTTTTTTTAGCGGTTT
GTTCTTGCTTACTGGTGTGTTTTCTGTCCCAGGCCCTCCCCAGGTGTTAC
GTCTGCATGCAGCACATCGATGCCCTCAACCCGGACATGGAGGTCGGACG
TCAGCACCAGCAGCACCAGCAGCAACCGCCCCTGGGGAAGGGAGGAGGGA
GTCCCGCTTACAGCAGCAGCAATAGCAGGGGCCACAACAGGGGAGTTCGA
GCGGACGGAGGCGTATCGAGGCGGAACCATGCGCCCGGAACGTCGCGAGA
CAAGTGGATCGCGCGCTGCAACACGTGAGTTTACACACACACACACACAC
ACAGGATCAATGCGAGTGGCATAGAATGACTAGGATGACAGGGCCGGATT
GCGTGGTTATGTGCAATTTAATAAATACACACACACACATACACACACAC
ACACACACATTGATCCCCCCTCGGGAGGATCAATGCGAGTGGCATAGAAT
GACTAGGATGACAGGGCCGGATTGCGTGGTTATGTGCAATTTAATAAATA
CACACACACACACACACACACACACACACACACAATATACCCCATTAGAA
AGGCTATTACTGTAAATAGTGTGACTTATAGTGTGAAGCACGTCAGGGGG
GTTGCACGGTTATTATGGGCAATTTGATAAAAAAAAACACGCACACACTA
ACTAGACGCAAAAAATAATAAGTTGCGTTTTTCTAATGACGAAGAATATG
TGCAGCATTGGTAACACACAGTATATAGTTCCATTTTTTGTTATGTGAGT
CGCGATTTTTTTTTAAACTTTTTCCCCCAGCAGGAGCAACCGCGGGTTTT
TCCGCGACGAACGGGTCGGTTAAATATTCACCCCTACTAAAACGCCAGTC
CAACTTTATTCCCCCAAATAGTGGCTTATTAATAGCACGTCCTTGAGTGG
AAACTCCAGGGGTTTTGTTCGGGAGGGCGGGATCGAAACAGCCCCCTACC
GGGGAAAGGTGTGATAAATCCCCTGATGAGCTGAATCACCGTTCCCGCGC
CTGAGCTCGGGAAAAGATTTGTCAGCCCCCCCATCCCACGCGACACTTTT
CCGAGGTTGAAAATGGGGCATATTGATATTACTACCCTTGTCACACAGTA
CAGTATAGTATAATACAGTACCCGCGGTGGGCATCGCAGGATGACGACGA
CCTTGTGCGTGCGTCGCGCGAACGTTTCGGGGACGTTTCAGCTCGACACC
CCGATCGGCGAAAGCTACCATATATAGTACCGTATAGCGGAGCGAAAATA
AACGCGATATCGTAGTTGATAGCGGGAGAGCGGGATAAAAAAATCGATTA
AAAACGATCCACCCCTCTGGTTGTGGGCCTGCATGCCTCGATCCCTCGAG
AAACCCCCTAACTGTAAAAGGCACCACCCGTTACTCGAGTTACCTTGAGC
TGGCCATGTGTCGGGGGACTTTCAGCTGTGAAGGTCATCGGTATATGTGG
ACGCTGTCGCGGAGAGCGGGAGAAATACCGTGAGTAAGCTCCAAATTCAG
CCTGAGCGTGGAGAATGAGCAGGCTGACGCGGGCTGGGACGGCCGAACCC
GTCTCGCGAGGCCAAACTTTTTCAGGCGCGAACGGGGACAGGGAAACCTC
ATTTTTCCTTGTTCAGCTGATCACGAGCAGGATTGGCAACCATTTATGGT
CACACATATAGCAACAGTAGTGGTCAACCTGGTAAGGTTGCCAATCCTGC
TCGTGGTCAGCTGAACAGGGAAAATAATATTCCCCTGTCCGCGTTCGTGC
CTGAGAATTTGGTCTCGCGAGACGGTTTCGGCAGTCCCGTCCCGCGTCAG
CCTGCTCACCTCCATACTCAGGCTGAATATGGTGCTTACTTACGGGATTC
CTCCCGAGTTCCGCGGCGGCGTCCATACATTTATATTAAACCGCCATACG
CCATCGGGTAAGTCCCGAGTTTATCGGGTCACGCAATTGCGCGTACCGAT
GGCGTTCACTGCCGCGAGTCCGTCGGCACAGGGTCAGTAAACCTCAAGGT
AGTTCCGCCGAACGAGTGCTGCCTTAGCAGGTCACCATGGACCAGTTGAT
ATACGCCTCGGTTTCCCATACCCACTATTGGTATGAAGAGGGCATGTTGA
AAGTAACGGCGAACCATATACCCGATTGATCCATACCCTGCCGAAAGTGC
TGATCACACATAGACTACTACTGTACTGAAATACTACTATACATTGGAAG
CACTATACTAAACTATAATACCTGGTATGCTATACTATACCATACTACTA
CACTAGAGTTATACTTTCAATAAAGCTATACTAAACGAATATCTACTATA
CTCTCACCCTCACACCACAATACACCAAAATATTACTCTACTTTTGTTAT
TATCTACTGAAATATTACTCTACTTTTGTTATTTTCTACTGAAATATCAC
TCTACTTTTGTTATTATCTACTGAAATATTTGTCTACTTTTGTTATTTTC
TACTGAAATATTACTCTACTTTCGTTATTATCAACTGAAATATTACTCTA
CTTTTGATATTTTATCTACTGAAATATGTGTCTACTTTTGTTATTTTCTA
CTGAAATATTACTCTACTTTTCTTATCATCTACTGAAATATGTGTCTACT
TTTGTTATTTTCTACTGAAATATTAATCTACTTTTGTTATTATCTACTGA
AATATTTGTCTACTTTTGTTGTTTTCTACTGAAAAAATATTACTCTACTT
TCGTTATTATCAACTGAAATATTACTCTACTTTTGATATTATCTACTGAA
ATATTACTCTACTTTTGTTATTATCTACTCCAGCTTTAGTCATAGTCTAC
ACTACACTCCTCCACATTGCACTATCATAACACTAAACTACATATTTAGT
CAGTCTAATTTGCACCACACTACATTACACTAAGCCACGACTCCACTTTT
CTTATTATCTTCTCTGCTCCAATCATATAGTCTATACTACTCTACACTGC
ACTGCTCTACACTACTCTACACTACTCTACACTGATTTCAACGACACTTC
ACTTCACGACACTACACTACACAGAAGTATTACTCTACTTTTGTCATTAT
CTACTCGGCTCTTATGATAGTCTGCATTACACTTCACTACATTCTACATA
CACACAACAAACAATACTACACTACATTACACCCAACACTACATATTACA
CTACATTACATACTACACTAGACTACACTACATATTAACACTACATTACA
TATGACACCACATTCCATATTACACTACAGGACACACAATCTGCATTACA
CTTCACTGCATTGCATGTTACATATTACACTTCTCGTTTATCTCTGACCT
TCGCTGCGTGTGCGGTCTGCTTTTTAACAAGAAAAACACAAAACAGAACA
TTAGACGACACTTTTTGCTACGAAGTTGGACGTCAAACATGCAAGGAAAC
GAACGATTCACTCCATCCACACCCCGAGAATCTCACACCAGAGGGTATGG
CTACAGGTATCGTAGGAGTTTCTACCGTGGAGCTTAGAGCTCTAGATAGT
CGGGTTGGGGGAGGGGGGCGGGGGGGGAGAGGAGAAGCGAGCTCAATCGC
TCGAGAAATCTTACAGCTACTGTATTGATTTGTTAGTATTGACTCGAACC
CGATACTGTAACGACTGTTGATAGCATTGATATACTGAATATATATATAT
TATGTATATAAAAGGGGAAAATATTGCTCGTGGGTGTCCGAAGGAGCTCT
ATCAAAAGAAGCCATTTTCATGCTCAGAACCTCATTTTTTTTTTTTTTGA
AACCCAGCTTTTTGAAACCCTTTTTCTACCCCAACATTTTTTTTCTTCAT
TTTTTTGTTTTTTTTTCTTCTTGTTTTCTTGTTCGACGCTTGTTTGTCTG
TTTGCTACTGCCTCGTCAGGTGTTGGCACGTCGGCCACGCTCACCACTTC
AGCTACTGGTTCGAGACCCACGACACCTGCGGGGTCAACGGCTGCCGCTG
CAAGTGCATGTCTCTCGATTCACCCATCGTGCCACCGTCCATCTCAAAAT
AAAATAAATGAGCGGTGACTCTTGAGTTACAGACAGTATGGTATATATAG
GACTATCAAGCAGTTGGTACATTTGGTATTGACAGTAGCGATGGTGTGCG
CAGGCAGCTTTTCTAACCTTCTAATCGAGGAAGGGCACTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig79:240547..249136+

>mRNA_F-serratus_M_contig79.19158.1 ID=mRNA_F-serratus_M_contig79.19158.1|Name=mRNA_F-serratus_M_contig79.19158.1|organism=Fucus serratus male|type=CDS|length=1554bp|location=Sequence derived from alignment at F-serratus_M_contig79:240547..249136+ (Fucus serratus male)
AGACTCTCCTCCCCTCGCCCTGGCGTTGGCCTGTTCGCGCAGGACGCGTC
TCCACCAGGTCGCCCCCTGGGCGGAAATCCGAGGGCCGAGCAGGGCGAGG
GAGTTCGACTGGTGGAGTCGTCGGTCGATCGTGAGCCGTGGCCCGACAAT
GGTGGTGTGCGTGCTGGGCTGACGGACGGGGGCAGGACCTACGACGGTTT
CGGTGGCGGAGTTCCTCCGTCGAGACATCTTCGCCTCAGAGACTCTCCTC
CCCTCGCCCTGGCGTTGGCCTGTTCGCGCAGGACGCGTCTCCACCAGGTC
GCCCCCTGGGCGGAAATCCGAGGGCCGAGCAGGGCGAGGGAGTTCGACTG
GTGGAGTCGTCGGTCGATCGTGAGCCGTGGCCCGACAATGGTGGTGTGCG
TGCTGGGCTGACGGACGGGGGCAGGACCTACGACGGTTTCGGTGGCGGAG
TTCCTCCGTCGAGACATCTTCGCCTCAGGTGCAACTTCTGCGGGAAGACA
GTCGGCGTGAGGGACACGGCGGGCGGAGGAGACCAGGCGGGGGCAGGAGA
CCGTCCCAAGCGGTCCAGCCGGAATCAGGGAGGGGGGGTGGGCAGGGCGA
GGGCGAAGCCTTTCATAGGGTACTGTCACTCTTGCCGGAAGGTGCAACTT
CTGCGGGAAGACAGTCGGCGTGAGGGACACGGCGGGCGGAGGAGACCAGG
CGGGGGCAGGAGACCGTCCCAAGCGGTCCAGCCGGAATCAGGGAGGGGGG
GTGGGCAGGGCGAGGGCGAAGCCTTTCATAGGGTACTGTCACTCTTGCCG
GAAGGCCCTCCCCAGGTGTTACGTCTGCATGCAGCACATCGATGCCCTCA
ACCCGGACATGGAGGTCGGACGTCAGCACCAGCAGCACCAGCAGCAACCG
CCCCTGGGGAAGGGAGGAGGGAGTCCCGCTTACAGCAGCAGCAATAGCAG
GGGCCACAACAGGGGAGTTCGAGCGGACGGAGGCGTATCGAGGCGGAACC
ATGCGCCCGGAACGTCGCGAGACAAGTGGATCGCGCGCTGCAACACGCCC
TCCCCAGGTGTTACGTCTGCATGCAGCACATCGATGCCCTCAACCCGGAC
ATGGAGGTCGGACGTCAGCACCAGCAGCACCAGCAGCAACCGCCCCTGGG
GAAGGGAGGAGGGAGTCCCGCTTACAGCAGCAGCAATAGCAGGGGCCACA
ACAGGGGAGTTCGAGCGGACGGAGGCGTATCGAGGCGGAACCATGCGCCC
GGAACGTCGCGAGACAAGTGGATCGCGCGCTGCAACACGTGTTGGCACGT
CGGCCACGCTCACCACTTCAGCTACTGGTTCGAGACCCACGACACCTGCG
GGGTCAACGGCTGCCGCTGCAAGTGCATGTCTCTCGATTCACCCATCGTG
CCACCGTCCATCTCAAAATAAGTGTTGGCACGTCGGCCACGCTCACCACT
TCAGCTACTGGTTCGAGACCCACGACACCTGCGGGGTCAACGGCTGCCGC
TGCAAGTGCATGTCTCTCGATTCACCCATCGTGCCACCGTCCATCTCAAA
ATAA
back to top