mRNA_F-serratus_M_contig79.19163.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig79.19163.1
Unique NamemRNA_F-serratus_M_contig79.19163.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig79.19163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig79contigF-serratus_M_contig79:407777..408574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size798
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig79.19163.1prot_F-serratus_M_contig79.19163.1Fucus serratus malepolypeptideF-serratus_M_contig79 407946..408365 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932343.6172416-UTR-F-serratus_M_contig79:407776..4079451622932343.6172416-UTR-F-serratus_M_contig79:407776..407945Fucus serratus maleUTRF-serratus_M_contig79 407777..407945 +
1690964262.8315842-UTR-F-serratus_M_contig79:407776..4079451690964262.8315842-UTR-F-serratus_M_contig79:407776..407945Fucus serratus maleUTRF-serratus_M_contig79 407777..407945 +
1622932343.646343-UTR-F-serratus_M_contig79:408365..4085741622932343.646343-UTR-F-serratus_M_contig79:408365..408574Fucus serratus maleUTRF-serratus_M_contig79 408366..408574 +
1690964262.851371-UTR-F-serratus_M_contig79:408365..4085741690964262.851371-UTR-F-serratus_M_contig79:408365..408574Fucus serratus maleUTRF-serratus_M_contig79 408366..408574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932343.6338732-CDS-F-serratus_M_contig79:407945..4083651622932343.6338732-CDS-F-serratus_M_contig79:407945..408365Fucus serratus maleCDSF-serratus_M_contig79 407946..408365 +
1690964262.8421164-CDS-F-serratus_M_contig79:407945..4083651690964262.8421164-CDS-F-serratus_M_contig79:407945..408365Fucus serratus maleCDSF-serratus_M_contig79 407946..408365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig79.19163.1

>prot_F-serratus_M_contig79.19163.1 ID=prot_F-serratus_M_contig79.19163.1|Name=mRNA_F-serratus_M_contig79.19163.1|organism=Fucus serratus male|type=polypeptide|length=140bp
MRFSSTGRRRHHNGRCEARPSPLPNTTPKTIARQQTPELEKALKHYLHLK
NATNCIKHSDTINLYVAFTRGMRPAIRPWSKNLKNRRAPVQPSPPSPPPP
VLCCTTHPHKQRGALNHTTKTQKYKKTEKLYHAHQQVLS*
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mRNA from alignment at F-serratus_M_contig79:407777..408574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig79.19163.1 ID=mRNA_F-serratus_M_contig79.19163.1|Name=mRNA_F-serratus_M_contig79.19163.1|organism=Fucus serratus male|type=mRNA|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig79:407777..408574+ (Fucus serratus male)
CATCAAAAGGCATATTATATTATATATTTTGAGGCAAACCTCGTACAAAT
ACTAGCCGGGGGTACTCATGGCGGTCATGTGGAGCCTACTTGCAGATTAC
ACCTTAAAAACTGGATGAACATGAAACCCCCCAAGCATAACACGAAAAAA
AAAACGCGCATGCACCATCATGAGGTTTTCCTCAACAGGAAGGAGGCGGC
ATCATAATGGGAGGTGCGAGGCCCGGCCTTCTCCTCTACCGAACACGACT
CCTAAGACAATAGCAAGGCAACAAACCCCAGAGCTCGAAAAAGCACTGAA
ACATTACTTACATCTGAAAAACGCTACGAACTGTATCAAGCATTCGGATA
CCATCAATCTATACGTTGCATTTACGCGGGGGATGAGACCCGCCATTCGC
CCGTGGAGTAAAAACCTAAAGAATAGGAGAGCACCCGTGCAGCCCTCTCC
GCCATCACCTCCACCCCCGGTGTTGTGCTGCACGACACATCCCCACAAGC
AGCGGGGAGCACTAAACCACACAACAAAAACGCAAAAGTACAAAAAAACG
GAGAAACTTTACCACGCACACCAACAAGTTTTATCATAGATCCCCGCCTT
GGGAGGACCGGACCAACGCGAGTGGATTAGAATGATTATTAGCACGACGG
GGTCGGATCGCGCAGTTATGTGCAGTTTAATCAAAACACACACACACACA
CAAACACGCAAATCACAAAAGATATTGGATTTGGAGTAGGCGATACATTT
TTAGCGGACACACAGACAGGGGCAAAGCGCGCACGCACGGAGGGGAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig79:407777..408574+

>mRNA_F-serratus_M_contig79.19163.1 ID=mRNA_F-serratus_M_contig79.19163.1|Name=mRNA_F-serratus_M_contig79.19163.1|organism=Fucus serratus male|type=CDS|length=840bp|location=Sequence derived from alignment at F-serratus_M_contig79:407777..408574+ (Fucus serratus male)
ATGAGGTTTTCCTCAACAGGAAGGAGGCGGCATCATAATGGGAGGTGCGA
GGCCCGGCCTTCTCCTCTACCGAACACGACTCCTAAGACAATAGCAAGGC
AACAAACCCCAGAGCTCGAAAAAGCACTGAAACATTACTTACATCTGAAA
AACGCTACGAACTGTATCAAGCATTCGGATACCATCAATCTATACGTTGC
ATTTACGCGGGGGATGAGACCCGCCATTCGCCCGTGGAGTAAAAACCTAA
AGAATAGGAGAGCACCCGTGCAGCCCTCTCCGCCATCACCTCCACCCCCG
GTGTTGTGCTGCACGACACATCCCCACAAGCAGCGGGGAGCACTAAACCA
CACAACAAAAACGCAAAAGTACAAAAAAACGGAGAAACTTTACCACGCAC
ACCAACAAGTTTTATCATAGATGAGGTTTTCCTCAACAGGAAGGAGGCGG
CATCATAATGGGAGGTGCGAGGCCCGGCCTTCTCCTCTACCGAACACGAC
TCCTAAGACAATAGCAAGGCAACAAACCCCAGAGCTCGAAAAAGCACTGA
AACATTACTTACATCTGAAAAACGCTACGAACTGTATCAAGCATTCGGAT
ACCATCAATCTATACGTTGCATTTACGCGGGGGATGAGACCCGCCATTCG
CCCGTGGAGTAAAAACCTAAAGAATAGGAGAGCACCCGTGCAGCCCTCTC
CGCCATCACCTCCACCCCCGGTGTTGTGCTGCACGACACATCCCCACAAG
CAGCGGGGAGCACTAAACCACACAACAAAAACGCAAAAGTACAAAAAAAC
GGAGAAACTTTACCACGCACACCAACAAGTTTTATCATAG
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