mRNA_F-serratus_M_contig79.19170.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig79.19170.1
Unique NamemRNA_F-serratus_M_contig79.19170.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig79.19170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig79contigF-serratus_M_contig79:697572..698006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size423
Cds size309
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig79.19170.1prot_F-serratus_M_contig79.19170.1Fucus serratus malepolypeptideF-serratus_M_contig79 697572..697892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932343.3723319-CDS-F-serratus_M_contig79:697571..6977151622932343.3723319-CDS-F-serratus_M_contig79:697571..697715Fucus serratus maleCDSF-serratus_M_contig79 697572..697715 +
1690964262.7249207-CDS-F-serratus_M_contig79:697571..6977151690964262.7249207-CDS-F-serratus_M_contig79:697571..697715Fucus serratus maleCDSF-serratus_M_contig79 697572..697715 +
1622932343.3901157-CDS-F-serratus_M_contig79:697727..6978921622932343.3901157-CDS-F-serratus_M_contig79:697727..697892Fucus serratus maleCDSF-serratus_M_contig79 697728..697892 +
1690964262.7456172-CDS-F-serratus_M_contig79:697727..6978921690964262.7456172-CDS-F-serratus_M_contig79:697727..697892Fucus serratus maleCDSF-serratus_M_contig79 697728..697892 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932343.407327-UTR-F-serratus_M_contig79:697892..6980061622932343.407327-UTR-F-serratus_M_contig79:697892..698006Fucus serratus maleUTRF-serratus_M_contig79 697893..698006 +
1690964262.7559614-UTR-F-serratus_M_contig79:697892..6980061690964262.7559614-UTR-F-serratus_M_contig79:697892..698006Fucus serratus maleUTRF-serratus_M_contig79 697893..698006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig79.19170.1

>prot_F-serratus_M_contig79.19170.1 ID=prot_F-serratus_M_contig79.19170.1|Name=mRNA_F-serratus_M_contig79.19170.1|organism=Fucus serratus male|type=polypeptide|length=103bp
GRNVKKKTCGCAVLLLYCADCLVKLRVFGRYKFYDFFRSHHTHTTTTLHL
SKSVTFDPICSNLSFDPTLWLFPSAPKSSQVKTAPRGFHQPAGPSVQRLM
FS*
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mRNA from alignment at F-serratus_M_contig79:697572..698006+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig79.19170.1 ID=mRNA_F-serratus_M_contig79.19170.1|Name=mRNA_F-serratus_M_contig79.19170.1|organism=Fucus serratus male|type=mRNA|length=435bp|location=Sequence derived from alignment at F-serratus_M_contig79:697572..698006+ (Fucus serratus male)
GGAAGGAATGTGAAAAAAAAAACCTGCGGCTGCGCAGTGCTACTGCTGTA
CTGTGCCGATTGTTTAGTGAAATTACGAGTTTTTGGTAGGTATAAATTTT
ATGATTTTTTTAGATCTCATCATACACATACAACGACCACTTTAGTGAGT
GGTGAGCACCTGAGCAAAAGTGTGACTTTCGACCCGATATGTTCAAATCT
GTCTTTTGACCCCACACTTTGGCTTTTCCCGTCCGCGCCAAAATCGAGTC
AAGTCAAAACGGCTCCAAGGGGTTTCCATCAACCTGCGGGGCCTTCGGTG
CAACGCCTAATGTTTTCATAGAGAATAAATTTTGTACATGAATAGTAACA
ATGCCACGCGCTGCACCAGACTACGCCTGCATTGAAGCAGCTATTTGATT
AGAGTTTTCGAAAATTGGAGGAAGGAGAAGGCAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig79:697572..698006+

>mRNA_F-serratus_M_contig79.19170.1 ID=mRNA_F-serratus_M_contig79.19170.1|Name=mRNA_F-serratus_M_contig79.19170.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig79:697572..698006+ (Fucus serratus male)
GGAAGGAATGTGAAAAAAAAAACCTGCGGCTGCGCAGTGCTACTGCTGTA
CTGTGCCGATTGTTTAGTGAAATTACGAGTTTTTGGTAGGTATAAATTTT
ATGATTTTTTTAGATCTCATCATACACATACAACGACCACTTTAGGAAGG
AATGTGAAAAAAAAAACCTGCGGCTGCGCAGTGCTACTGCTGTACTGTGC
CGATTGTTTAGTGAAATTACGAGTTTTTGGTAGGTATAAATTTTATGATT
TTTTTAGATCTCATCATACACATACAACGACCACTTTACACCTGAGCAAA
AGTGTGACTTTCGACCCGATATGTTCAAATCTGTCTTTTGACCCCACACT
TTGGCTTTTCCCGTCCGCGCCAAAATCGAGTCAAGTCAAAACGGCTCCAA
GGGGTTTCCATCAACCTGCGGGGCCTTCGGTGCAACGCCTAATGTTTTCA
TAGCACCTGAGCAAAAGTGTGACTTTCGACCCGATATGTTCAAATCTGTC
TTTTGACCCCACACTTTGGCTTTTCCCGTCCGCGCCAAAATCGAGTCAAG
TCAAAACGGCTCCAAGGGGTTTCCATCAACCTGCGGGGCCTTCGGTGCAA
CGCCTAATGTTTTCATAG
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