mRNA_F-serratus_M_contig79.19155.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig79.19155.1
Unique NamemRNA_F-serratus_M_contig79.19155.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig79.19155.1 vs. uniprot
Match: A0A6H5KKS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.360e-20
Identity = 51/97 (52.58%), Postives = 59/97 (60.82%), Query Frame = 2 
Query:   17 DIRMLAVGYSSGKIGLTRFADMGGTGESVCVVAAASANRACNAVAWDPARPARLAAGWAK-------------SRYDICIRVYDVNYVEQWHGGIGA 268
            DIRMLAVGYSSGK+GL RF+D  G GE VCVV A   NR C AVAWDP  P+RLAA W K             +R D  + + D++YV QW    GA
Sbjct:  364 DIRMLAVGYSSGKVGLVRFSDEPGHGEVVCVVPAEKKNRPCKAVAWDPENPSRLAAAWTKVRRCLYRGGGALMTRSDKSLAICDIHYVRQWRQRRGA 460
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig79.19155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKS1_9PHAE1.360e-2052.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig79contigF-serratus_M_contig79:180996..184502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size268
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig79.19155.1prot_F-serratus_M_contig79.19155.1Fucus serratus malepolypeptideF-serratus_M_contig79 180997..184502 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932343.2826524-UTR-F-serratus_M_contig79:180995..1809961622932343.2826524-UTR-F-serratus_M_contig79:180995..180996Fucus serratus maleUTRF-serratus_M_contig79 180996..180996 +
1690964262.6767752-UTR-F-serratus_M_contig79:180995..1809961690964262.6767752-UTR-F-serratus_M_contig79:180995..180996Fucus serratus maleUTRF-serratus_M_contig79 180996..180996 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932343.2981641-CDS-F-serratus_M_contig79:180996..1810501622932343.2981641-CDS-F-serratus_M_contig79:180996..181050Fucus serratus maleCDSF-serratus_M_contig79 180997..181050 +
1690964262.6881275-CDS-F-serratus_M_contig79:180996..1810501690964262.6881275-CDS-F-serratus_M_contig79:180996..181050Fucus serratus maleCDSF-serratus_M_contig79 180997..181050 +
1622932343.3177125-CDS-F-serratus_M_contig79:182910..1830511622932343.3177125-CDS-F-serratus_M_contig79:182910..183051Fucus serratus maleCDSF-serratus_M_contig79 182911..183051 +
1690964262.6992254-CDS-F-serratus_M_contig79:182910..1830511690964262.6992254-CDS-F-serratus_M_contig79:182910..183051Fucus serratus maleCDSF-serratus_M_contig79 182911..183051 +
1622932343.3303573-CDS-F-serratus_M_contig79:184430..1845021622932343.3303573-CDS-F-serratus_M_contig79:184430..184502Fucus serratus maleCDSF-serratus_M_contig79 184431..184502 +
1690964262.708628-CDS-F-serratus_M_contig79:184430..1845021690964262.708628-CDS-F-serratus_M_contig79:184430..184502Fucus serratus maleCDSF-serratus_M_contig79 184431..184502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig79.19155.1

>prot_F-serratus_M_contig79.19155.1 ID=prot_F-serratus_M_contig79.19155.1|Name=mRNA_F-serratus_M_contig79.19155.1|organism=Fucus serratus male|type=polypeptide|length=89bp
MPQATDIRMLAVGYSSGKIGLTRFADMGGTGESVCVVAAASANRACNAVA
WDPARPARLAAGWAKSRYDICIRVYDVNYVEQWHGGIGA
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mRNA from alignment at F-serratus_M_contig79:180996..184502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig79.19155.1 ID=mRNA_F-serratus_M_contig79.19155.1|Name=mRNA_F-serratus_M_contig79.19155.1|organism=Fucus serratus male|type=mRNA|length=3507bp|location=Sequence derived from alignment at F-serratus_M_contig79:180996..184502+ (Fucus serratus male)
GATGCCGCAGGCGACGGACATTCGCATGCTCGCCGTGGGCTACTCCAGCG
GAAAGGTGTGTTTACGATGTCTTCCGGTACCGTCCAACAGTACTATAGTA
TAGCGCAGTATTTTATTTTGCTTTAGTTTTGTTTTATCTTACTTACAGTA
TAGCCGATGAGCCTCAGCGTGCAAGGTTACCAACCCCACCTACTGCAACG
TTGCCATCCTAATCCTGCCTGTGGCGGACACGAAGGATCTTCTTCTCCCC
CTTCCCAGATTTTTTTATGGCCGATGTACAGCTTTTTTCGTAGCCGATGG
GCCTCATTCCATTCTGCCTGTGGTCGCTAAGGATCTTCTTCCCATCTCTC
CCCGGTTCTCACGCCTTACGAATTTTCATCGCGATGCAAGTTCAGCACTC
TTACAACTCCTCAACCAATGGTTGAATTTCACCTACTAGCGCTCTCACGC
TTTCCGCTACGGAAGCAAGAATTAAAATCATGATTAAGCCAAGAGTCGAA
CTCACGACCTCCGCACTAGCAGGTGTGCAGGTTATCTACTAGACCACTCG
GGCGACGATATAGGATAAATAGTACTGTATTAAATAGGTATTTGTCGAAC
TAGGTGGCTGTGTATGATACATGTTTTGTATGTGTTTATGTGTAGTGTAT
TTTTTGAATGGCGCACAGCCGCGCAATCCGACACCCTATCATATCCTGCT
AATAGCCATTCGATGCTGTTCATACACACATCCCCTTCCCCTAGTGGTGT
ATTGCACGTATGTATCAGTACATGTATGTATCTAGGTATCTATGTATGCA
TTTATGTATCTATGTATGTATTTATGTATCTATGTATGTATCTATGTCTA
TGTATCTTTGTAGGTATCTATATATGTATGTAGGTATCTATCTTGTATGC
CTATGTATGTAGGTATCTATGTGTGTGTGTGTGTGTGTGTGTGTGTTTTT
GTTTTTTTGTTTTATCTCACTTAAAAGCCAATGGACCTCATGATTACCAT
CCTGCCTGCGATCACAAAGGATCTTTCCATCTCTCCCCGGTTCACGCTTT
GCAATTTTTTATCGCGATGCAAGTTCAGCAATCTTACAACTCGTCAACCA
ATGGTTGAAGTTTACCTACTCACGTTCCCACGCTTTCCGTTACGAAAGAA
AGAACACAAATTCTGATTAAGCTAAGAATCGAACTCACGACTTCCGCACT
AGCAGGTGTGCAGGTTACCTACTAGACCAGCATGTATGTATCTATGTATG
TATCTTGGTATGTATGTATGTATCTTGGTATCTGTATTATGTAGGTATCT
TATGTATGCATGTATATATGCTTACATGCGTGTGTATCTCTCCGTTAACT
TGTGTTGCCTTGCGCGTGTTGCATTTCCAGTTATTCTTCTTTGTGTGTAC
TTTTGATGTATGATTTCTTAGTTTTGTTTTGATCCTCTCGGGGGAGTTTT
TTTGTGTGCTTTTTTTCTCTCTCTCTTTCTCTTTCCGCGTTTTTGTGGTT
ATTGTCGTGCGCGCCTCAAAGCTCGAAGATTACTTCCACCGACGGAGCGG
TCGATAAATCCCGTACCTTTTTTATCTTTCTCTCTCTCTTCCTCCTCCCT
CGTCCCCCGTCCCCTTTTCGCCTCATTCCCTCTGCAACTCTGCAACAACA
CAAGAATGCTATTAATTAGCCTATTAGTACTTGCAGATCTTTCCTCCCAT
CTTGAAAAGTTCATACCGCACGCACGCACGCACACGCGGACATTCACACA
GACACATGCACTCATCATATATATATATCTATAACGTGTAAAAAAGGGTT
TTCAGTCGAGATTCAAGGGCTGCACAATGGAGGGTAAGACCCACACCGCC
CCCGCCCCCGCCCCCTCCCCCCGCCCCGATCCGTTCGTATTTTGCGGGTT
TCCACCGAATTACAGATTGGTCTTACTCGCTTCGCTGATATGGGGGGGAC
CGGGGAAAGTGTGTGCGTGGTGGCCGCTGCCAGCGCTAATCGTGCCTGCA
ACGCCGTCGCCTGGGACCCGGCGAGGCCCGCGCGATTAGCTGCGGGCTGG
GCGAAAGTACGTTTTCATCCCCGGGAAGACATGCATTTAATTATTCATTC
ATTCATTCATCCATCCGATCGATGTAGGAATCCCACGTAATGATATTATA
CCATAGAGTACATCATAGAGTACACCATGGGGTACATCGTAGATTACACC
ATTGGTTACACCATAGAGTAGTATTGATAGTGTGCCTCGGGTGGTCATGT
TATCCATTCACTAATGTAGCCCATGTGGTGATGGATATATAGCTATAAAA
CAATCTATGCATGCGTACGCGTTGAAACGAGCCGATCGTATTGAGGTGGT
TAACTGGCAGCTCCCAAACGAAAACTGATATTAGGTTTCGGCAAAACACG
GAATGAATGCCCTCCGAGTCAACAACAAGAAGGCGTTCAGATTTTCCTTT
GATTGAAACAACCGCACAAATTCCTGCAGTATTTTCTGTTAATAGTGGAT
AATTTTGCATGATTGTGGACGCAGGACCCAACAGCACTTGCCGTTTTTTT
TTCTTGGCTCGTTCGTTAGGGTCTCTCCAATGAAGTGAAGTCGTTAGTAG
GGCAGGGCCTGAAATACTTCAAACTTGGCTGCAGCCGAAAACTCGCTATG
AGTCGAACGATCTGGGAAAAAAATAAAATAAAAATCGGCAAGACACGAGT
ACAATTTGGTCATTTTCGACCGGAGAGGGTGTTGTTTGGGGGGGTAGGGG
GGGCTATGGTCAAATTGACCAGCCGCTTTGCCAGACCTGGGCGCACAGGT
GTTCAAGAGGGGGGGTACCCGGTCTAGGTCGCCTTGTCATGTGCCGGTAC
TTTCGACATGCCTACTTTATACCAACAGTGAGTGTGGGAAAGAGATGTAC
ATATGAATTGGTCCATGGTGACCTGCCAAGGCAATTCACCCGTTTGGAAC
TACCTTGAGGTTTACTGGCCCTGTGCCGGTGGACTCTCGGCAGTGAACGC
CATCGGTACGCAATTACGTGACCCGATAAACTCGGGACCGACCCGATGGC
GTTTGGCGGTTTTAATTAAATAAATGGACGCCGCCGCGGAACTCGGGTGG
AATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGAATGAGCAGG
CTGACGCGGGACGAGACTGCCGAAACCGTCTCGCGAGACCAAATTCTCAG
GCGCGAACGGGGACAGGGAAATACCCATTTCCCCCGTTCAGCTGACCACG
TGCAGGATTGGCAACCTTACCAGGTTGACCCTTACTCCTGCTTTATGTGT
GACCAGATATATGATCAACAAACGGGAGATTTTTTCCTCTCCCATCCGCG
CTTCACGCCCTCTACTACTGTATACCTACTTTTGATTCCCTTGACAACCC
CCTCTCCCCGCCCCCTCCCCGCCTCCTCACCGAAGAGCCGGTACGACATC
TGTATCAGAGTGTACGACGTCAACTACGTCGAGCAGTGGCACGGTGGAAT
CGGGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig79:180996..184502+

>mRNA_F-serratus_M_contig79.19155.1 ID=mRNA_F-serratus_M_contig79.19155.1|Name=mRNA_F-serratus_M_contig79.19155.1|organism=Fucus serratus male|type=CDS|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig79:180996..184502+ (Fucus serratus male)
ATGCCGCAGGCGACGGACATTCGCATGCTCGCCGTGGGCTACTCCAGCGG
AAAGATGCCGCAGGCGACGGACATTCGCATGCTCGCCGTGGGCTACTCCA
GCGGAAAGATTGGTCTTACTCGCTTCGCTGATATGGGGGGGACCGGGGAA
AGTGTGTGCGTGGTGGCCGCTGCCAGCGCTAATCGTGCCTGCAACGCCGT
CGCCTGGGACCCGGCGAGGCCCGCGCGATTAGCTGCGGGCTGGGCGAAAA
TTGGTCTTACTCGCTTCGCTGATATGGGGGGGACCGGGGAAAGTGTGTGC
GTGGTGGCCGCTGCCAGCGCTAATCGTGCCTGCAACGCCGTCGCCTGGGA
CCCGGCGAGGCCCGCGCGATTAGCTGCGGGCTGGGCGAAAAGCCGGTACG
ACATCTGTATCAGAGTGTACGACGTCAACTACGTCGAGCAGTGGCACGGT
GGAATCGGGGCGAGCCGGTACGACATCTGTATCAGAGTGTACGACGTCAA
CTACGTCGAGCAGTGGCACGGTGGAATCGGGGCG
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