mRNA_F-serratus_M_contig789.19144.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig789.19144.1
Unique NamemRNA_F-serratus_M_contig789.19144.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig789.19144.1 vs. uniprot
Match: A0A6H5J8U3_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U3_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.650e-22
Identity = 96/296 (32.43%), Postives = 122/296 (41.22%), Query Frame = 1 
Query:    1 STCNRRFTLRNDTMGDLSIHWEIAEVISETMPSPQAAQDHYAEGSRRPESEAIHRQLVDFLAAASGSKAIEGRDDAAGGPITTEDLSRREHPTPPPLASSSQHSPCYQRDPGLEWNRAYYAVGEEGGGNRVNDGGDGRRSGEPIAKM-------------GPFSIVPGSIVVPAGDEVSFEVAFSPTFLGCTEYEATAMISGVPAAALGFHSPTGKL------------DGGFGEGVAVLASGNE----FNGNNNPFLLSGDSRFRLFLRSLDPDREGNFDRDTLSDALKSLLPLL 801
            STC RRFTLRN T GDL I WE +++ S      Q  Q                              A  G  D  G   T  D    E      +  S+     Y    G +W     A   EG    V  GG    S     K              GPF I P   VVPA  EVSFEVAFSP  L    ++A A++ G+PAAAL +H+P G L             GG  +G   L+SG +        ++   ++G+ RFRLFLRSLDPD +G F +      L+++ PLL
Sbjct:  725 STCRRRFTLRNYTTGDLGIRWEASDITS-----AQKRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGGFVDIFG---TVGDSEVTE------IRGSA-----YADREGADWEPGASAPRNEGRTGDVAAGGIQPSSSLAAGKTAQMAEGLATAPGRGPFVIFPDFAVVPAQGEVSFEVAFSPPGLREVGFQAVAVVQGIPAAALAYHNPAGMLVDSDKVASDEETRGGVDKGAGKLSSGGDGKEGLGNRSDNRAVAGEGRFRLFLRSLDPDGKGCFSKHEFMKGLRAMCPLL 1001
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig789.19144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J8U3_9PHAE4.650e-2232.43EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig789contigF-serratus_M_contig789:14851..17198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue6.3e-08
Seed eggNOG ortholog2880.D7G9C2
Preferred nameDLEC1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008285,GO:0042127,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0065007
EggNOG free text desc.negative regulation of cell proliferation
EggNOG OGs28IDE@1,2QQQ5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size880
Cds size879
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig789.19144.1prot_F-serratus_M_contig789.19144.1Fucus serratus malepolypeptideF-serratus_M_contig789 14851..17198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932341.7171707-CDS-F-serratus_M_contig789:14850..153891622932341.7171707-CDS-F-serratus_M_contig789:14850..15389Fucus serratus maleCDSF-serratus_M_contig789 14851..15389 +
1690964261.8567848-CDS-F-serratus_M_contig789:14850..153891690964261.8567848-CDS-F-serratus_M_contig789:14850..15389Fucus serratus maleCDSF-serratus_M_contig789 14851..15389 +
1622932341.734149-CDS-F-serratus_M_contig789:16339..165101622932341.734149-CDS-F-serratus_M_contig789:16339..16510Fucus serratus maleCDSF-serratus_M_contig789 16340..16510 +
1690964261.870287-CDS-F-serratus_M_contig789:16339..165101690964261.870287-CDS-F-serratus_M_contig789:16339..16510Fucus serratus maleCDSF-serratus_M_contig789 16340..16510 +
1622932341.7576642-CDS-F-serratus_M_contig789:17029..171981622932341.7576642-CDS-F-serratus_M_contig789:17029..17198Fucus serratus maleCDSF-serratus_M_contig789 17030..17198 +
1690964261.8809223-CDS-F-serratus_M_contig789:17029..171981690964261.8809223-CDS-F-serratus_M_contig789:17029..17198Fucus serratus maleCDSF-serratus_M_contig789 17030..17198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig789.19144.1

>prot_F-serratus_M_contig789.19144.1 ID=prot_F-serratus_M_contig789.19144.1|Name=mRNA_F-serratus_M_contig789.19144.1|organism=Fucus serratus male|type=polypeptide|length=293bp
STCNRRFTLRNDTMGDLSIHWEIAEVISETMPSPQAAQDHYAEGSRRPES
EAIHRQLVDFLAAASGSKAIEGRDDAAGGPITTEDLSRREHPTPPPLASS
SQHSPCYQRDPGLEWNRAYYAVGEEGGGNRVNDGGDGRRSGEPIAKMGPF
SIVPGSIVVPAGDEVSFEVAFSPTFLGCTEYEATAMISGVPAAALGFHSP
TGKLDGGFGEGVAVLASGNEFNGNNNPFLLSGDSRFRLFLRSLDPDREGN
FDRDTLSDALKSLLPLLGDDSDGFQKSVAERRGGGDCRLHGE*
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mRNA from alignment at F-serratus_M_contig789:14851..17198+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig789.19144.1 ID=mRNA_F-serratus_M_contig789.19144.1|Name=mRNA_F-serratus_M_contig789.19144.1|organism=Fucus serratus male|type=mRNA|length=2348bp|location=Sequence derived from alignment at F-serratus_M_contig789:14851..17198+ (Fucus serratus male)
AGCACTTGCAACCGTCGCTTTACGCTGCGGAATGACACAATGGGAGACCT
TTCGATTCATTGGGAGATCGCCGAGGTGATCTCTGAGACGATGCCATCTC
CGCAGGCTGCGCAGGATCATTACGCGGAGGGCAGCAGGCGTCCGGAGTCA
GAAGCCATACACCGACAGCTAGTCGATTTTCTTGCCGCAGCCAGTGGGTC
CAAAGCTATTGAGGGCAGAGACGACGCTGCTGGAGGCCCTATCACCACTG
AGGATCTTTCTCGGAGAGAGCATCCAACCCCCCCGCCCCTGGCGAGCAGC
TCCCAACACTCACCCTGTTACCAGCGAGACCCAGGTCTCGAATGGAATCG
CGCGTATTACGCCGTGGGAGAAGAAGGTGGCGGAAATCGTGTGAACGACG
GTGGCGATGGCAGGCGGTCGGGGGAACCGATTGCCAAGATGGGGCCGTTC
TCTATTGTCCCTGGGTCCATCGTCGTGCCGGCCGGAGATGAGGTTTCCTT
CGAAGTGGCATTTTCCCCGACTTTCTTGGGATGTACCGAGTGAGAGGAAG
GGGATGAATACGAATGAAACTCTTCTATTTTTCGGCTATGGGTATTTGAA
TGATAGAAAGTATTTCCCTTGTCAATGTGTAATAAGTGGAATATTTTCAA
CAATAATCACGAAGAAGGTGTTGGTCTAGAAATGGTCAACCTTCCCCCAA
GGGACAGTCAAGTCGTCTTGCCCCCGTGATGAACTGTCGCATTATATTTT
TCCACTAATGCTTGCATGACTGCTACGTGTGCGCGCTGGGACCTACGGCA
TTATCATTAGAAATTACGCAATGCGTATTTTTCGGCGTGAAAGTGACATC
CTTCCAACAGTCGCCTGATCTTTCACGGGTTTCCTTTTTTCCCTTTTTCC
AAGTAATAGCCTCTCTGTGGTCCATGCCTTGTCGGCGGTAAGCTAACGCA
GTGATGATTCCGCACCTGTAACTTCGTCTAGGTCTACATTTGCTCTGTGT
ATGCCCCGCCGTACGCCATAGCTTCCATGGTGGAACTGATCATATGTTTC
CGCTCTACAACTACTACTTCAACAAATAGTATAATTCTTCTATTGATTCA
ACACTAATCACGTTTTTCTGCTGTTGGCAGTCCCAATGTCTCGATCGGAG
ATCTTCATTGCTCTATATGCTTTCGTTGTGTAAGATACGCTTGCCATCTC
TAGTGTAGCTATGCACTTTCCTATATGTTTGTTTTGGCATCCCCTAATAT
AGTAGATAGTAGCGCTCTTTGCTATTAAAAGTTTCTTGTCTTGCGGCAAA
TACCAATGCTTGCCAGAGGTAAGTAAAAAACAACACCTCCTCCTCCTACG
TACAGTACCTCCTAGTGTATGTACTACGAATATACAAATCGTTGACGGCT
CAAAAAACAGCCTTCACCTTTACTTGGTTATATGAAAAAGTTCGCGTAGC
ACCTATTGATATGCTGCCTGCTATATATATATATAAAAGGTACGAAGCGA
CGGCGATGATCAGCGGCGTGCCGGCCGCGGCCCTGGGCTTCCACAGCCCA
ACCGGGAAGCTGGACGGCGGCTTTGGAGAAGGAGTAGCCGTTTTAGCATC
AGGGAACGAGTTTAACGGCAACAACAATCCCTTCTTGCTATCGGGGGACA
GTCGGTTCAGGTGGTGTATAGTTCTACTGCACTGTCTTGCAGTTCCAGTC
AGTCTTTTATTTTGTCCCTTCCCAGCTGGGAAATTACCGAACAATTCAAC
GTGAGATCCAGAATCCAATAAGTTATTTAAACACCACACTGAACCGACTG
CGTAAAATAATAATACTTGTGAACCTGAAAATGACCGCGTACGGTAAAGA
AGCATGCGTTATAATATTTCTTTGGCGGGGTCTGTTTTGGGGAGGGTTGG
GGAGAGAGGGGAGGGGAGCGGGAAAAAGTGATAGATCGTTTTTTTAGCAT
TTGGTAATATGCAGTAGTTTGTACCATTACGTACCTAGTACATACAACTA
TTTATTGATATGTCAATAAATATTACAATTTACGTTTACAATTCACCTTT
TCGTTTTGAGTGGTAAAGGAGGCCTCCTACTATGCACGTGGACTGGACTC
TCGACCCCATCCCGTTTCTCTGCCCCCCCCCCCGTCGTACGAAACAAATT
ATATTATGCAATTTATGCTTGCCACAAAGATTATTTCTCCGGTCCTTGGA
TCCTGATAGAGAAGGAAACTTTGATCGAGATACTCTCAGTGATGCACTGA
AGTCCTTACTTCCTCTCCTTGGAGACGACTCCGACGGTTTTCAGAAGAGC
GTCGCCGAGCGCCGGGGTGGTGGAGACTGTAGATTGCACGGTGAGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig789:14851..17198+

>mRNA_F-serratus_M_contig789.19144.1 ID=mRNA_F-serratus_M_contig789.19144.1|Name=mRNA_F-serratus_M_contig789.19144.1|organism=Fucus serratus male|type=CDS|length=1758bp|location=Sequence derived from alignment at F-serratus_M_contig789:14851..17198+ (Fucus serratus male)
AGCACTTGCAACCGTCGCTTTACGCTGCGGAATGACACAATGGGAGACCT
TTCGATTCATTGGGAGATCGCCGAGGTGATCTCTGAGACGATGCCATCTC
CGCAGGCTGCGCAGGATCATTACGCGGAGGGCAGCAGGCGTCCGGAGTCA
GAAGCCATACACCGACAGCTAGTCGATTTTCTTGCCGCAGCCAGTGGGTC
CAAAGCTATTGAGGGCAGAGACGACGCTGCTGGAGGCCCTATCACCACTG
AGGATCTTTCTCGGAGAGAGCATCCAACCCCCCCGCCCCTGGCGAGCAGC
TCCCAACACTCACCCTGTTACCAGCGAGACCCAGGTCTCGAATGGAATCG
CGCGTATTACGCCGTGGGAGAAGAAGGTGGCGGAAATCGTGTGAACGACG
GTGGCGATGGCAGGCGGTCGGGGGAACCGATTGCCAAGATGGGGCCGTTC
TCTATTGTCCCTGGGTCCATCGTCGTGCCGGCCGGAGATGAGGTTTCCTT
CGAAGTGGCATTTTCCCCGACTTTCTTGGGATGTACCGAAGCACTTGCAA
CCGTCGCTTTACGCTGCGGAATGACACAATGGGAGACCTTTCGATTCATT
GGGAGATCGCCGAGGTGATCTCTGAGACGATGCCATCTCCGCAGGCTGCG
CAGGATCATTACGCGGAGGGCAGCAGGCGTCCGGAGTCAGAAGCCATACA
CCGACAGCTAGTCGATTTTCTTGCCGCAGCCAGTGGGTCCAAAGCTATTG
AGGGCAGAGACGACGCTGCTGGAGGCCCTATCACCACTGAGGATCTTTCT
CGGAGAGAGCATCCAACCCCCCCGCCCCTGGCGAGCAGCTCCCAACACTC
ACCCTGTTACCAGCGAGACCCAGGTCTCGAATGGAATCGCGCGTATTACG
CCGTGGGAGAAGAAGGTGGCGGAAATCGTGTGAACGACGGTGGCGATGGC
AGGCGGTCGGGGGAACCGATTGCCAAGATGGGGCCGTTCTCTATTGTCCC
TGGGTCCATCGTCGTGCCGGCCGGAGATGAGGTTTCCTTCGAAGTGGCAT
TTTCCCCGACTTTCTTGGGATGTACCGAGTACGAAGCGACGGCGATGATC
AGCGGCGTGCCGGCCGCGGCCCTGGGCTTCCACAGCCCAACCGGGAAGCT
GGACGGCGGCTTTGGAGAAGGAGTAGCCGTTTTAGCATCAGGGAACGAGT
TTAACGGCAACAACAATCCCTTCTTGCTATCGGGGGACAGTCGGTTCAGG
TACGAAGCGACGGCGATGATCAGCGGCGTGCCGGCCGCGGCCCTGGGCTT
CCACAGCCCAACCGGGAAGCTGGACGGCGGCTTTGGAGAAGGAGTAGCCG
TTTTAGCATCAGGGAACGAGTTTAACGGCAACAACAATCCCTTCTTGCTA
TCGGGGGACAGTCGGTTCAGATTATTTCTCCGGTCCTTGGATCCTGATAG
AGAAGGAAACTTTGATCGAGATACTCTCAGTGATGCACTGAAGTCCTTAC
TTCCTCTCCTTGGAGACGACTCCGACGGTTTTCAGAAGAGCGTCGCCGAG
CGCCGGGGTGGTGGAGACTGTAGATTGCACGGTGAGTGAATTATTTCTCC
GGTCCTTGGATCCTGATAGAGAAGGAAACTTTGATCGAGATACTCTCAGT
GATGCACTGAAGTCCTTACTTCCTCTCCTTGGAGACGACTCCGACGGTTT
TCAGAAGAGCGTCGCCGAGCGCCGGGGTGGTGGAGACTGTAGATTGCACG
GTGAGTGA
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