mRNA_F-serratus_M_contig789.19146.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig789.19146.1
Unique NamemRNA_F-serratus_M_contig789.19146.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig789.19146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig789contigF-serratus_M_contig789:141439..142828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1390
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig789.19146.1prot_F-serratus_M_contig789.19146.1Fucus serratus malepolypeptideF-serratus_M_contig789 141466..142239 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932341.216405-UTR-F-serratus_M_contig789:141438..1414651622932341.216405-UTR-F-serratus_M_contig789:141438..141465Fucus serratus maleUTRF-serratus_M_contig789 141439..141465 +
1690964261.6122477-UTR-F-serratus_M_contig789:141438..1414651690964261.6122477-UTR-F-serratus_M_contig789:141438..141465Fucus serratus maleUTRF-serratus_M_contig789 141439..141465 +
1622932341.2545197-UTR-F-serratus_M_contig789:142239..1428281622932341.2545197-UTR-F-serratus_M_contig789:142239..142828Fucus serratus maleUTRF-serratus_M_contig789 142240..142828 +
1690964261.6342275-UTR-F-serratus_M_contig789:142239..1428281690964261.6342275-UTR-F-serratus_M_contig789:142239..142828Fucus serratus maleUTRF-serratus_M_contig789 142240..142828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932341.2350936-CDS-F-serratus_M_contig789:141465..1422391622932341.2350936-CDS-F-serratus_M_contig789:141465..142239Fucus serratus maleCDSF-serratus_M_contig789 141466..142239 +
1690964261.624156-CDS-F-serratus_M_contig789:141465..1422391690964261.624156-CDS-F-serratus_M_contig789:141465..142239Fucus serratus maleCDSF-serratus_M_contig789 141466..142239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig789.19146.1

>prot_F-serratus_M_contig789.19146.1 ID=prot_F-serratus_M_contig789.19146.1|Name=mRNA_F-serratus_M_contig789.19146.1|organism=Fucus serratus male|type=polypeptide|length=258bp
MADLVWKTCVGDGSSARPVVGVPGSQMPGYCTKHSSERMINLVNKTCPSD
GCSKRPTCEVTGSRKRKSCAKRAPVRMVNVLKERVSGDGYSTHPSYSVAG
SWPPGHSVRHTETENVAIIKKCAGSVSSISPSNDMVESGTQEYETERGPE
EALDVDKEECTDSDCSMSSSCGTTGRGKRKLSADYTSSMRICAGKACCRR
TIYGVTTCGKRNHCGDGGFISKNASATAWRPDFRGPSSGGKNDADFVKIE
VSLSLSK*
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mRNA from alignment at F-serratus_M_contig789:141439..142828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig789.19146.1 ID=mRNA_F-serratus_M_contig789.19146.1|Name=mRNA_F-serratus_M_contig789.19146.1|organism=Fucus serratus male|type=mRNA|length=1390bp|location=Sequence derived from alignment at F-serratus_M_contig789:141439..142828+ (Fucus serratus male)
TGCCGTGCCGAGCATGCTTTGGATGGCATGGCCGACCTTGTGTGGAAGAC
GTGCGTCGGCGACGGATCCTCTGCAAGGCCGGTCGTTGGGGTTCCCGGTA
GCCAAATGCCGGGATACTGTACCAAGCATTCTTCGGAAAGGATGATTAAT
CTTGTAAACAAGACGTGCCCCAGCGATGGATGCTCCAAGAGGCCAACCTG
CGAGGTAACCGGCAGCAGAAAGCGAAAGTCCTGCGCCAAGCGTGCCCCGG
TAAGGATGGTAAACGTGTTGAAAGAGAGGGTATCCGGCGATGGATACTCT
ACGCATCCAAGCTACAGCGTGGCCGGCAGCTGGCCACCGGGCCACTCCGT
CAGACATACGGAGACGGAAAACGTCGCTATTATCAAAAAGTGCGCTGGCA
GCGTATCCTCTATCAGTCCCAGCAATGATATGGTCGAAAGTGGGACGCAA
GAGTACGAAACCGAACGTGGGCCAGAGGAGGCGCTCGACGTTGATAAAGA
GGAGTGCACAGACAGTGACTGCTCGATGAGTTCGAGTTGTGGCACGACCG
GTCGAGGCAAGCGGAAGCTATCTGCCGATTATACTTCTAGCATGCGGATT
TGCGCCGGTAAAGCATGCTGCAGGCGCACGATCTACGGTGTAACCACTTG
TGGGAAGCGAAATCACTGTGGAGATGGAGGCTTCATATCCAAAAACGCTT
CAGCAACTGCATGGCGGCCTGACTTTAGAGGACCCTCTTCCGGGGGAAAA
AACGATGCAGATTTTGTGAAGATAGAGGTTTCGTTGTCTTTATCTAAATA
GGTTTTCTCTTAGGCGATGAAGTTTTGCGAAGAGCCGATCTATTACCGGA
TAAGGGAGGGAGTTTGGTTCTCGGCGAAGGCCATAACGTTGCTTTTGTTC
GTTCATATTTTGTTGGTTTCGAGCTAAGAAACCACAGGAGGGAGCCCCGA
CATTGTTGAAGCACAACGCTACCTTCATTCGAACGTCGGAGCGACGCTAC
AAGCAGGTATTATCTTATCTGAAAAGTGGTCGAATTGTTTATCAGCGAAG
TCATACCCATGACATTGAAGGGCGAGGAATCTCGATGGAAACCCCTATTG
CCGGATCTCTAGAGTCTAGCAAAAATATATAAAGGCGACGGATACCCGAA
AGCATTGTCGAGGGGGCATTTTGACAACCACGTCGCGTAATGAGCCTCGT
CGGCATGCCAAGCTATAATATGGGTATCGGCACAACAATGTACAGCTAGT
TTCAACGCGTAACCTGCATCAATGGCCAAACGCGTGGGGTAATGGAGCGT
TATGCCAGTAATCGGGGAAGTTAGTATCTCGATTAAGTAGGATGACGTCC
CCCTCTGAGATAACTAACTGCAATCGTACGAGGATGTCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig789:141439..142828+

>mRNA_F-serratus_M_contig789.19146.1 ID=mRNA_F-serratus_M_contig789.19146.1|Name=mRNA_F-serratus_M_contig789.19146.1|organism=Fucus serratus male|type=CDS|length=1548bp|location=Sequence derived from alignment at F-serratus_M_contig789:141439..142828+ (Fucus serratus male)
ATGGCCGACCTTGTGTGGAAGACGTGCGTCGGCGACGGATCCTCTGCAAG
GCCGGTCGTTGGGGTTCCCGGTAGCCAAATGCCGGGATACTGTACCAAGC
ATTCTTCGGAAAGGATGATTAATCTTGTAAACAAGACGTGCCCCAGCGAT
GGATGCTCCAAGAGGCCAACCTGCGAGGTAACCGGCAGCAGAAAGCGAAA
GTCCTGCGCCAAGCGTGCCCCGGTAAGGATGGTAAACGTGTTGAAAGAGA
GGGTATCCGGCGATGGATACTCTACGCATCCAAGCTACAGCGTGGCCGGC
AGCTGGCCACCGGGCCACTCCGTCAGACATACGGAGACGGAAAACGTCGC
TATTATCAAAAAGTGCGCTGGCAGCGTATCCTCTATCAGTCCCAGCAATG
ATATGGTCGAAAGTGGGACGCAAGAGTACGAAACCGAACGTGGGCCAGAG
GAGGCGCTCGACGTTGATAAAGAGGAGTGCACAGACAGTGACTGCTCGAT
GAGTTCGAGTTGTGGCACGACCGGTCGAGGCAAGCGGAAGCTATCTGCCG
ATTATACTTCTAGCATGCGGATTTGCGCCGGTAAAGCATGCTGCAGGCGC
ACGATCTACGGTGTAACCACTTGTGGGAAGCGAAATCACTGTGGAGATGG
AGGCTTCATATCCAAAAACGCTTCAGCAACTGCATGGCGGCCTGACTTTA
GAGGACCCTCTTCCGGGGGAAAAAACGATGCAGATTTTGTGAAGATAGAG
GTTTCGTTGTCTTTATCTAAATAGATGGCCGACCTTGTGTGGAAGACGTG
CGTCGGCGACGGATCCTCTGCAAGGCCGGTCGTTGGGGTTCCCGGTAGCC
AAATGCCGGGATACTGTACCAAGCATTCTTCGGAAAGGATGATTAATCTT
GTAAACAAGACGTGCCCCAGCGATGGATGCTCCAAGAGGCCAACCTGCGA
GGTAACCGGCAGCAGAAAGCGAAAGTCCTGCGCCAAGCGTGCCCCGGTAA
GGATGGTAAACGTGTTGAAAGAGAGGGTATCCGGCGATGGATACTCTACG
CATCCAAGCTACAGCGTGGCCGGCAGCTGGCCACCGGGCCACTCCGTCAG
ACATACGGAGACGGAAAACGTCGCTATTATCAAAAAGTGCGCTGGCAGCG
TATCCTCTATCAGTCCCAGCAATGATATGGTCGAAAGTGGGACGCAAGAG
TACGAAACCGAACGTGGGCCAGAGGAGGCGCTCGACGTTGATAAAGAGGA
GTGCACAGACAGTGACTGCTCGATGAGTTCGAGTTGTGGCACGACCGGTC
GAGGCAAGCGGAAGCTATCTGCCGATTATACTTCTAGCATGCGGATTTGC
GCCGGTAAAGCATGCTGCAGGCGCACGATCTACGGTGTAACCACTTGTGG
GAAGCGAAATCACTGTGGAGATGGAGGCTTCATATCCAAAAACGCTTCAG
CAACTGCATGGCGGCCTGACTTTAGAGGACCCTCTTCCGGGGGAAAAAAC
GATGCAGATTTTGTGAAGATAGAGGTTTCGTTGTCTTTATCTAAATAG
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