prot_F-serratus_M_contig788.19138.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig788.19138.1
Unique Nameprot_F-serratus_M_contig788.19138.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length107
Homology
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BLAST of mRNA_F-serratus_M_contig788.19138.1 vs. uniprot
Match: D7FN10_ECTSI (Choline transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN10_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.590e-15
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 0 
Query:   42 VISTTLEVVQSGFKAVFVCFVQDPDFLASNHDRQLHDELSRAWEAMHRGC 91
            V++TT+EV++S FKAVFVCFVQDPD LASNH RQLHD+LSRAW  M   C
Sbjct:  461 VVATTVEVLRSSFKAVFVCFVQDPDALASNHGRQLHDDLSRAWGEMQAEC 510
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BLAST of mRNA_F-serratus_M_contig788.19138.1 vs. uniprot
Match: D8LGQ1_ECTSI (Choline transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGQ1_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 5.210e-13
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 0 
Query:   34 FGFLACVTVISTTLEVVQSGFKAVFVCFVQDPDFLASNHDRQLHDELSRAWEAMH 88
            FG +A   ++ST LEVV+SGFKAVFVCFVQDP+ LA  H  ++H EL  AW+ MH
Sbjct:  514 FGVVALAFLVSTVLEVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAWQHMH 568
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BLAST of mRNA_F-serratus_M_contig788.19138.1 vs. uniprot
Match: D7FHM4_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM4_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.520e-10
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 0 
Query:   34 FGFLACVTVISTTLEVVQSGFKAVFVCFVQDPDFLASNHDRQLHDELSRAWEAMHRGC 91
            F F+      STT+ V++SG KAVFVCFVQDP+ LA+NH  Q +D+LS AW+ +   C
Sbjct:  345 FFFVPVAVCFSTTMSVLRSGRKAVFVCFVQDPEALANNHGSQTYDDLSGAWQQIQTEC 402
[Close]
BLAST of mRNA_F-serratus_M_contig788.19138.1 vs. uniprot
Match: D7FHM6_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM6_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 3.200e-9
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 0 
Query:    1 MMATSLVFAASSYA--SGLASWETVDLVAATYLAAFGFLACVTVISTTLEVVQSGFKAVFVCFVQDPDFLASNHDRQLHDELSRAWEAMHRGC 91
            +M+T LV   SS    +G+    ++D +    +  F F+      STT+ V++SG KAVFVCFVQDP+  A+NH  Q++D+LS AW+ +   C
Sbjct:  532 LMSTYLVVVCSSMVMLTGVQFSGSLDGLIMFVVVVFVFVPVAVCFSTTMSVLRSGHKAVFVCFVQDPEAFANNHS-QMYDDLSGAWQQIQTEC 623
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig788.19138.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FN10_ECTSI2.590e-1572.00Choline transporter-like protein n=2 Tax=Ectocarpu... [more]
D8LGQ1_ECTSI5.210e-1360.00Choline transporter-like protein n=2 Tax=Ectocarpu... [more]
D7FHM4_ECTSI2.520e-1051.72Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D7FHM6_ECTSI3.200e-939.78Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..50
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 15..29
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..106
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..14
NoneNo IPR availableTMHMMTMhelixcoord: 25..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig788contigF-serratus_M_contig788:269767..270476 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig788.19138.1mRNA_F-serratus_M_contig788.19138.1Fucus serratus malemRNAF-serratus_M_contig788 268669..340837 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig788.19138.1 ID=prot_F-serratus_M_contig788.19138.1|Name=mRNA_F-serratus_M_contig788.19138.1|organism=Fucus serratus male|type=polypeptide|length=107bp
MMATSLVFAASSYASGLASWETVDLVAATYLAAFGFLACVTVISTTLEVV
QSGFKAVFVCFVQDPDFLASNHDRQLHDELSRAWEAMHRGCSTKPEEAAF
EEVELA*
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