mRNA_F-serratus_M_contig7867.19132.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE) HSP 1 Score: 194 bits (494), Expect = 6.540e-59 Identity = 105/190 (55.26%), Postives = 117/190 (61.58%), Query Frame = 1
Query: 1 KVARRIKPSLSEAQKKRRIDFICDQVDETTGDYLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPKIM----------------------------------------------------RG--------EEYEFDCTIDAEWYKDWYIDQLLPAIKKKMPWQRSKRVVVQQDGASPH 390
K A RIKPSLS+AQK+ R+DFI D+VDE G+YLDQGNVVHLDESWF+LM+EKEK+R+F E+VPG PRV H+SHLPKIM G EEYEFDCTIDAEWYKDWYID LLPAIK+KMPW RSKRVVVQQDGASPH
Sbjct: 116 KKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPH 305
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: UPI00188F83A1 (uncharacterized protein LOC119300137 n=2 Tax=Triticum dicoccoides TaxID=85692 RepID=UPI00188F83A1) HSP 1 Score: 58.5 bits (140), Expect = 1.980e-7 Identity = 32/81 (39.51%), Postives = 45/81 (55.56%), Query Frame = 1
Query: 13 RIKPSLSEAQKKRRIDFICDQVDETT-GD----YLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPKIM 240
R+KP L+E K+ R+DF +DE T GD + N+VH+DE WF + K K + PDEE P P K+ + K+M
Sbjct: 159 RVKPVLTEKNKRDRVDFCLSMIDEATLGDVSPSFRSMHNIVHIDEKWFSMTKRKRNYYLLPDEEDPERPV---KNSIGKVM 236
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: UPI0019D51CFF (uncharacterized protein LOC120671035 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D51CFF) HSP 1 Score: 57.4 bits (137), Expect = 4.500e-7 Identity = 31/97 (31.96%), Postives = 58/97 (59.79%), Query Frame = 1
Query: 16 IKPSLSEAQKKRRIDFICDQVDETTGD---YLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRV-QHKSHLPKIMRGEEYEFDCTIDAEWYKD 294
+KP L+EA KK R+ + D +D++ D + D ++V +DE WF+L ++ E+ + PDE+ P R+ ++K+++P+IM F C + ++D
Sbjct: 33 VKPYLTEANKKTRLKWCIDMIDQSLLDDPKFKDLFDIVFIDEKWFYLYQKSERYYLLPDEDEPH--RICKNKNYIPRIM------FLCVVARPRFRD 121
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1) HSP 1 Score: 57.0 bits (136), Expect = 6.410e-7 Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 16 IKPSLSEAQKKRRIDFICDQVDETTGDYLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPKIM 240
+KP+L+E K+ R++F Q+D T + D NVVH+DE WF++ K K + DE P + RV+ K + K M
Sbjct: 69 VKPTLTEDNKRTRLEFCLSQIDPDTLLFSDMFNVVHIDEKWFYMCKTTTKYYLVHDEPEP-TRRVKSKRFITKAM 142
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: UPI0019D69F99 (uncharacterized protein LOC120703634 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D69F99) HSP 1 Score: 56.6 bits (135), Expect = 9.320e-7 Identity = 30/97 (30.93%), Postives = 58/97 (59.79%), Query Frame = 1
Query: 16 IKPSLSEAQKKRRIDFICDQVDETTGD---YLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRV-QHKSHLPKIMRGEEYEFDCTIDAEWYKD 294
+KP L+EA KK R+ + D +D++ D + D ++V +DE WF++ ++ E+ + PDE+ P R+ ++K+++P+IM F C + ++D
Sbjct: 158 VKPYLTEANKKTRLKWCIDMIDQSLLDDPKFKDLFDIVFIDEKWFYIYQKSERYYLLPDEDEPH--RICKNKNYIPRIM------FLCVVARPRFRD 246
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: A0A485K2S3_9STRA (Aste57867_497 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K2S3_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 2.530e-6 Identity = 48/150 (32.00%), Postives = 65/150 (43.33%), Query Frame = 1
Query: 13 RIKPSLSEAQKKRRIDFICDQVDETTGDYLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPKIM------------------------RGEEYEFDCTIDAEWYKDWYIDQLLPAIKKKMPWQRSKRVVVQQDGASPH 390
RIKP L++A K RI F C + +V DE WF K K+ + EE P + K +PK M G +DA Y+D+ I+Q++PAIK+K P SKRVV+Q D A+PH
Sbjct: 30 RIKPLLTDANKATRIAF-C------------RSHVRPSDEKWFNADKNVRKVYLTEGEE-PIQRAWKSKRFIPKAMFLAAVARPRHVADQPAVRTSRNRPAGTMVATLVNVDATVYRDYVINQVIPAIKEKFP-TASKRVVLQHDNATPH 164
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: UPI0019D57972 (uncharacterized protein LOC120699683 isoform X1 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D57972) HSP 1 Score: 54.7 bits (130), Expect = 4.450e-6 Identity = 31/96 (32.29%), Postives = 54/96 (56.25%), Query Frame = 1
Query: 16 IKPSLSEAQKKRRIDFICDQVDETTGDYL---DQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPKIMRGEEYEFDCTIDAEWYKD 294
IKP L++A KK R+ + D +D+ D L D + V +DE WF+L ++ E+ + PDE+ P ++K+++P+IM F C + ++D
Sbjct: 206 IKPYLTDANKKTRLQWCIDMIDQGLLDDLKFKDLFDFVFIDEKWFYLHQKSERYYLLPDEDEPHRT-CKNKNYIPRIM------FLCVVARPRFRD 294
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: A0A6A4ZEB5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZEB5_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 1.110e-5 Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 16 IKPSLSEAQKKRRIDFICDQVDETTGD---YLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPKIM 240
+KP L++A K R++F + GD + D ++VH+DE WF+L K K ++ D+EV VQ KSH+ K+M
Sbjct: 154 LKPRLTDANIKLRLEFAMSFLRSGPGDRQVFSDMHDIVHVDEKWFYLTKNKSVYYIY-DDEVLAIRSVQSKSHITKVM 230
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: W4FND3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FND3_9STRA) HSP 1 Score: 49.7 bits (117), Expect = 2.840e-5 Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 1
Query: 16 IKPSLSEAQKKRRIDFICDQVDETTGD---YLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPK 234
+KP L++A K R++F + GD + D ++VH+DE WF+L K K ++ D+EV VQ KSH+ K
Sbjct: 13 LKPRLTDANIKLRLEFAMSFLRSGPGDRRVFSDMHDIVHVDEKWFYLTKNKNVYYIY-DDEVLAIRSVQSKSHITK 87
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: A0A1U8HCR4_CAPAN (uncharacterized protein LOC107876564 n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8HCR4_CAPAN) HSP 1 Score: 52.0 bits (123), Expect = 3.620e-5 Identity = 27/79 (34.18%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 16 IKPSLSEAQKKRRIDFICDQVDETTGD----YLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPKIM 240
IKP LSEA K+ R+ F VD + +LD N VH+DE WF++ ++ ++ + P++E P + K+++ K+M
Sbjct: 63 IKPLLSEANKRTRLQFCLSMVDPESIPHDLFFLDMYNTVHIDEKWFYMTRKCQRYYLLPEKEDPVRT-CKSKNYIEKVM 140 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig7867.19132.1 >prot_F-serratus_M_contig7867.19132.1 ID=prot_F-serratus_M_contig7867.19132.1|Name=mRNA_F-serratus_M_contig7867.19132.1|organism=Fucus serratus male|type=polypeptide|length=130bp KVARRIKPSLSEAQKKRRIDFICDQVDETTGDYLDQGNVVHLDESWFFLMback to top mRNA from alignment at F-serratus_M_contig7867:3768..4268+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig7867.19132.1 ID=mRNA_F-serratus_M_contig7867.19132.1|Name=mRNA_F-serratus_M_contig7867.19132.1|organism=Fucus serratus male|type=mRNA|length=501bp|location=Sequence derived from alignment at F-serratus_M_contig7867:3768..4268+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig7867:3768..4268+ >mRNA_F-serratus_M_contig7867.19132.1 ID=mRNA_F-serratus_M_contig7867.19132.1|Name=mRNA_F-serratus_M_contig7867.19132.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig7867:3768..4268+ (Fucus serratus male)back to top |