mRNA_F-serratus_M_contig1257.1916.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1257.1916.1
Unique NamemRNA_F-serratus_M_contig1257.1916.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1257.1916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1257contigF-serratus_M_contig1257:110547..110984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size438
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1257.1916.1prot_F-serratus_M_contig1257.1916.1Fucus serratus malepolypeptideF-serratus_M_contig1257 110588..110947 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.8704605-UTR-F-serratus_M_contig1257:110546..1105871622929179.8704605-UTR-F-serratus_M_contig1257:110546..110587Fucus serratus maleUTRF-serratus_M_contig1257 110547..110587 +
1690962739.3819702-UTR-F-serratus_M_contig1257:110546..1105871690962739.3819702-UTR-F-serratus_M_contig1257:110546..110587Fucus serratus maleUTRF-serratus_M_contig1257 110547..110587 +
1622929179.9039545-UTR-F-serratus_M_contig1257:110947..1109841622929179.9039545-UTR-F-serratus_M_contig1257:110947..110984Fucus serratus maleUTRF-serratus_M_contig1257 110948..110984 +
1690962739.4069042-UTR-F-serratus_M_contig1257:110947..1109841690962739.4069042-UTR-F-serratus_M_contig1257:110947..110984Fucus serratus maleUTRF-serratus_M_contig1257 110948..110984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.8917897-CDS-F-serratus_M_contig1257:110587..1109471622929179.8917897-CDS-F-serratus_M_contig1257:110587..110947Fucus serratus maleCDSF-serratus_M_contig1257 110588..110947 +
1690962739.3968143-CDS-F-serratus_M_contig1257:110587..1109471690962739.3968143-CDS-F-serratus_M_contig1257:110587..110947Fucus serratus maleCDSF-serratus_M_contig1257 110588..110947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1257.1916.1

>prot_F-serratus_M_contig1257.1916.1 ID=prot_F-serratus_M_contig1257.1916.1|Name=mRNA_F-serratus_M_contig1257.1916.1|organism=Fucus serratus male|type=polypeptide|length=120bp
MNSRYVRVVVSSTRGYSSFAPKAVLVPMAQCGAAVLLPTEQEIMEANHGP
VWRTSGVDNHHPINCRFQSMRAAALFERHGFPLPLTTLVTITVAGRLSCR
AIFLGSVYLIIGQDVEESL*
back to top

mRNA from alignment at F-serratus_M_contig1257:110547..110984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1257.1916.1 ID=mRNA_F-serratus_M_contig1257.1916.1|Name=mRNA_F-serratus_M_contig1257.1916.1|organism=Fucus serratus male|type=mRNA|length=438bp|location=Sequence derived from alignment at F-serratus_M_contig1257:110547..110984+ (Fucus serratus male)
GTCTTTGTACTGCCGATTCTCGCGACCCGTCAGACTGGGGGATGAACTCG
AGGTACGTGCGCGTCGTGGTCTCCTCTACGCGTGGGTATAGCAGTTTCGC
ACCGAAGGCGGTACTCGTTCCCATGGCGCAATGTGGTGCCGCAGTTTTGT
TACCGACGGAGCAGGAAATCATGGAAGCCAATCACGGCCCAGTTTGGAGA
ACATCAGGAGTTGACAACCATCATCCAATTAATTGCAGATTTCAATCGAT
GAGAGCAGCTGCGCTTTTTGAACGCCACGGATTCCCTCTACCGCTAACGA
CTCTTGTGACAATAACAGTAGCAGGACGGCTCTCGTGTCGCGCGATTTTT
CTTGGATCCGTTTATTTAATCATAGGTCAGGATGTGGAAGAGAGTCTATG
ATGAGGAAGGCGGTGCTCCACTTGGAGTCAAGGGGTGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1257:110547..110984+

>mRNA_F-serratus_M_contig1257.1916.1 ID=mRNA_F-serratus_M_contig1257.1916.1|Name=mRNA_F-serratus_M_contig1257.1916.1|organism=Fucus serratus male|type=CDS|length=720bp|location=Sequence derived from alignment at F-serratus_M_contig1257:110547..110984+ (Fucus serratus male)
ATGAACTCGAGGTACGTGCGCGTCGTGGTCTCCTCTACGCGTGGGTATAG
CAGTTTCGCACCGAAGGCGGTACTCGTTCCCATGGCGCAATGTGGTGCCG
CAGTTTTGTTACCGACGGAGCAGGAAATCATGGAAGCCAATCACGGCCCA
GTTTGGAGAACATCAGGAGTTGACAACCATCATCCAATTAATTGCAGATT
TCAATCGATGAGAGCAGCTGCGCTTTTTGAACGCCACGGATTCCCTCTAC
CGCTAACGACTCTTGTGACAATAACAGTAGCAGGACGGCTCTCGTGTCGC
GCGATTTTTCTTGGATCCGTTTATTTAATCATAGGTCAGGATGTGGAAGA
GAGTCTATGAATGAACTCGAGGTACGTGCGCGTCGTGGTCTCCTCTACGC
GTGGGTATAGCAGTTTCGCACCGAAGGCGGTACTCGTTCCCATGGCGCAA
TGTGGTGCCGCAGTTTTGTTACCGACGGAGCAGGAAATCATGGAAGCCAA
TCACGGCCCAGTTTGGAGAACATCAGGAGTTGACAACCATCATCCAATTA
ATTGCAGATTTCAATCGATGAGAGCAGCTGCGCTTTTTGAACGCCACGGA
TTCCCTCTACCGCTAACGACTCTTGTGACAATAACAGTAGCAGGACGGCT
CTCGTGTCGCGCGATTTTTCTTGGATCCGTTTATTTAATCATAGGTCAGG
ATGTGGAAGAGAGTCTATGA
back to top