mRNA_F-serratus_M_contig1257.1912.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1257.1912.1
Unique NamemRNA_F-serratus_M_contig1257.1912.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1257.1912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1257contigF-serratus_M_contig1257:40176..41009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size471
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1257.1912.1prot_F-serratus_M_contig1257.1912.1Fucus serratus malepolypeptideF-serratus_M_contig1257 40252..40956 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.7017074-UTR-F-serratus_M_contig1257:40175..402511622929179.7017074-UTR-F-serratus_M_contig1257:40175..40251Fucus serratus maleUTRF-serratus_M_contig1257 40176..40251 -
1690962739.3379555-UTR-F-serratus_M_contig1257:40175..402511690962739.3379555-UTR-F-serratus_M_contig1257:40175..40251Fucus serratus maleUTRF-serratus_M_contig1257 40176..40251 -
1622929179.823468-UTR-F-serratus_M_contig1257:40956..410091622929179.823468-UTR-F-serratus_M_contig1257:40956..41009Fucus serratus maleUTRF-serratus_M_contig1257 40957..41009 -
1690962739.3658597-UTR-F-serratus_M_contig1257:40956..410091690962739.3658597-UTR-F-serratus_M_contig1257:40956..41009Fucus serratus maleUTRF-serratus_M_contig1257 40957..41009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.776665-CDS-F-serratus_M_contig1257:40251..405551622929179.776665-CDS-F-serratus_M_contig1257:40251..40555Fucus serratus maleCDSF-serratus_M_contig1257 40252..40555 -
1690962739.3506007-CDS-F-serratus_M_contig1257:40251..405551690962739.3506007-CDS-F-serratus_M_contig1257:40251..40555Fucus serratus maleCDSF-serratus_M_contig1257 40252..40555 -
1622929179.8096523-CDS-F-serratus_M_contig1257:40918..409561622929179.8096523-CDS-F-serratus_M_contig1257:40918..40956Fucus serratus maleCDSF-serratus_M_contig1257 40919..40956 -
1690962739.3585207-CDS-F-serratus_M_contig1257:40918..409561690962739.3585207-CDS-F-serratus_M_contig1257:40918..40956Fucus serratus maleCDSF-serratus_M_contig1257 40919..40956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1257.1912.1

>prot_F-serratus_M_contig1257.1912.1 ID=prot_F-serratus_M_contig1257.1912.1|Name=mRNA_F-serratus_M_contig1257.1912.1|organism=Fucus serratus male|type=polypeptide|length=114bp
MMIKEAILMLQDSGASIGDARDQAARNGSSADVEGRHHASGVGSDEHCAD
CERLLHASVELKRVMLERATANAERARAGKIGTLEAPRRAAGGGDIPLKT
KALTDARVSLLKP*
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mRNA from alignment at F-serratus_M_contig1257:40176..41009-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1257.1912.1 ID=mRNA_F-serratus_M_contig1257.1912.1|Name=mRNA_F-serratus_M_contig1257.1912.1|organism=Fucus serratus male|type=mRNA|length=834bp|location=Sequence derived from alignment at F-serratus_M_contig1257:40176..41009- (Fucus serratus male)
GGGCAGTAGAGGCAGTAGACGAATGCGGGAGGATATGTCGACGGTTGGTG
GATATGATGATCAAGGAGGCCATCTTAATGCTCCAAGATAGGTGTGTTTA
CCTCACTCAATCCTACCAAGCTATCACTAGGCGCTTTCCTCACGAGTCTG
GCACAGGCGCTTGGAGGAGTAGGTCTCCGGGGGAGGGGCTCCAGATTCCC
GCGAGAAAAAATCCTTCGCAAATCCCTCGCTCGCCATGTAGACAAGATAC
GATATGCGCGCAAGCTGAAAACCTTATACACGAGACGTTATACATATTTT
AATAGTATATTACAACGCCAGGCATTTTGATGGGTTTCGGCTATTAATAG
TGTATTCAACTCTGCTGGAGGAAAAGACCTGTCGAGACTTGCTTCTCGGC
ATCGATCCTTGGTAACCATGCGCGTTCTCCTTTTGGCCTTGTCACTTTAT
TAAGCGGGGCCTCGATCGGCGATGCCCGGGACCAAGCAGCGCGGAACGGC
AGCTCCGCAGACGTCGAAGGCCGCCATCACGCGTCGGGCGTAGGGAGCGA
TGAGCATTGCGCCGATTGCGAGAGGCTGCTGCACGCCAGCGTCGAGCTCA
AGCGTGTCATGCTCGAGCGTGCCACGGCGAATGCCGAGCGAGCTCGAGCG
GGCAAGATAGGCACCCTCGAGGCTCCGCGAAGGGCGGCGGGGGGCGGCGA
CATCCCGCTCAAGACGAAAGCGCTGACCGATGCGCGCGTGTCACTCTTAA
AACCATGATGGACTTGATCGATCATACCGACTTGAGAATAGCATAGATTT
GATACTTGCGTCAACTGAAAGCAAGGCGGGGAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1257:40176..41009-

>mRNA_F-serratus_M_contig1257.1912.1 ID=mRNA_F-serratus_M_contig1257.1912.1|Name=mRNA_F-serratus_M_contig1257.1912.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig1257:40176..41009- (Fucus serratus male)
ATGATGATCAAGGAGGCCATCTTAATGCTCCAAGATAGATGATGATCAAG
GAGGCCATCTTAATGCTCCAAGATAGCGGGGCCTCGATCGGCGATGCCCG
GGACCAAGCAGCGCGGAACGGCAGCTCCGCAGACGTCGAAGGCCGCCATC
ACGCGTCGGGCGTAGGGAGCGATGAGCATTGCGCCGATTGCGAGAGGCTG
CTGCACGCCAGCGTCGAGCTCAAGCGTGTCATGCTCGAGCGTGCCACGGC
GAATGCCGAGCGAGCTCGAGCGGGCAAGATAGGCACCCTCGAGGCTCCGC
GAAGGGCGGCGGGGGGCGGCGACATCCCGCTCAAGACGAAAGCGCTGACC
GATGCGCGCGTGTCACTCTTAAAACCATGACGGGGCCTCGATCGGCGATG
CCCGGGACCAAGCAGCGCGGAACGGCAGCTCCGCAGACGTCGAAGGCCGC
CATCACGCGTCGGGCGTAGGGAGCGATGAGCATTGCGCCGATTGCGAGAG
GCTGCTGCACGCCAGCGTCGAGCTCAAGCGTGTCATGCTCGAGCGTGCCA
CGGCGAATGCCGAGCGAGCTCGAGCGGGCAAGATAGGCACCCTCGAGGCT
CCGCGAAGGGCGGCGGGGGGCGGCGACATCCCGCTCAAGACGAAAGCGCT
GACCGATGCGCGCGTGTCACTCTTAAAACCATGA
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