mRNA_F-serratus_M_contig786.19131.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig786.19131.1
Unique NamemRNA_F-serratus_M_contig786.19131.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig786.19131.1 vs. uniprot
Match: D7FMI3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMI3_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.670e-21
Identity = 52/75 (69.33%), Postives = 56/75 (74.67%), Query Frame = -2
Query:  183 IAAVGDSLDHDILGALRNGMGSVFIAGGVHFDELGVAQGAGDVPSDEAYSAAFAKHLGGASMSSVPTYVMPGLRW 407
            I AVGDSL HDILGALR  + SVF+AGGVHFDEL V QG   VPSDEAYSAAF+KHL G      PT+VMP  RW
Sbjct:  301 IVAVGDSLPHDILGALRAQLASVFVAGGVHFDELRVEQGGAGVPSDEAYSAAFSKHLEG---EGTPTHVMPAFRW 372          
BLAST of mRNA_F-serratus_M_contig786.19131.1 vs. uniprot
Match: A0A7S4D550_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D550_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 3.980e-13
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = -2
Query:  183 IAAVGDSLDHDILGALRNGMGSVFIAGGVHFDELGVAQGAGDVPSDEAYSAAFAKHLGGASMSSVPTYVMPGLRW 407
            + AVGDSLDHDILGA R G+ S+FI GG+H +ELG+ +G  + PS +A    +A+H GG     VPT+ MP   W
Sbjct:  292 VCAVGDSLDHDILGASRAGIESIFIIGGIHSEELGIKEGGRECPSQKALEKLYARHGGG-----VPTHSMPAFVW 361          
BLAST of mRNA_F-serratus_M_contig786.19131.1 vs. uniprot
Match: A9V6S2_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V6S2_MONBE)

HSP 1 Score: 63.5 bits (153), Expect = 7.320e-9
Identity = 36/76 (47.37%), Postives = 44/76 (57.89%), Query Frame = -2
Query:  186 STIAAVGDSLDHDILGALRNGMGSVFIAGGVHFDELGVAQGAGDVPSDEAYSAAFAKHLGGASMSSVPTYVMPGLR 413
            S I AVGDSL HDI GAL+ G+  VF+ GGVH  ELG+A G G  P        FA+ LG       PT+V+P  +
Sbjct:  233 SRIVAVGDSLHHDIEGALKAGLDCVFVTGGVHAPELGIAAGVGQAPDPARCEKLFAQVLGADRR---PTHVIPAFK 305          
BLAST of mRNA_F-serratus_M_contig786.19131.1 vs. uniprot
Match: R1FGE1_EMIHU (Tentative p-Nitrophenyl phosphatase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FGE1_EMIHU)

HSP 1 Score: 63.2 bits (152), Expect = 1.060e-8
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = -2
Query:  186 IAAVGDSLDHDILGALRNGMGSVFIAGGVHFDELGVAQGAGDVPSDE---AYSAAFAKHLGGASMSSVPTYVMPGLR 407
            +AAVGDSL HD+LGA +NG+ SVFI GGVH+ EL V Q A   P+ +   A  A FA   GG +    PT+ + G R
Sbjct:  244 VAAVGDSLHHDVLGASQNGVDSVFICGGVHYRELEVPQAAAVPPAADKLAALLATFASEHGGCT----PTHALAGFR 316          
BLAST of mRNA_F-serratus_M_contig786.19131.1 vs. uniprot
Match: A0A8K1CP86_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP86_PYTOL)

HSP 1 Score: 62.0 bits (149), Expect = 2.670e-8
Identity = 34/81 (41.98%), Postives = 45/81 (55.56%), Query Frame = -2
Query:  183 TLGPSTIAAVGDSLDHDILGALRNGMGSVFIAGGVHFDELGVAQGAGDVPSDEAYSAAFAKHLGGASMSSVPTYVMPGLRW 425
            T   S +  +GDS+ HDI GA+   + SVFIAGG+H +EL V  G G+   D ++  A     G       PTYV+PG RW
Sbjct:  238 TTDRSRVVHIGDSMHHDIQGAVNTEIDSVFIAGGIHGEELAVKLGPGEPEMDASHLTAIFTRYG-----IEPTYVVPGFRW 313          
BLAST of mRNA_F-serratus_M_contig786.19131.1 vs. uniprot
Match: UPI0009F3B9B8 (uncharacterized protein LOC110093466 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F3B9B8)

HSP 1 Score: 61.2 bits (147), Expect = 5.140e-8
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = -2
Query:  183 LGPSTIAAVGDSLDHDILGALRNGMGSVFIAGGVHFDELGVAQGAGDVPSDEAYSAAFAKHLGGASMSSVPTYVMPGLRW 422
            L PS   A+GDSL HDI GA   G+ SVFI GG+H  ELG+A  +G  P  EA  A  +K+       + P+YV+P   W
Sbjct:  248 LDPSDCVAIGDSLHHDIKGANNAGIESVFITGGIHAAELGLADLSGS-PETEALQALASKY------DAYPSYVLPSFSW 320          
BLAST of mRNA_F-serratus_M_contig786.19131.1 vs. uniprot
Match: A0A7S0J5S4_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J5S4_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 7.200e-8
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = -2
Query:  294 STIAAVGDSLDHDILGALRNGMGSVFIAGGVHFDELGVAQ 413
            + +AAVGDSL HD+LGA RNG+ SVF+ GGVH+ ELG+ Q
Sbjct:  149 AAVAAVGDSLHHDVLGAARNGVDSVFVCGGVHYQELGIPQ 188          
BLAST of mRNA_F-serratus_M_contig786.19131.1 vs. uniprot
Match: A0A0G4EGR2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EGR2_VITBC)

HSP 1 Score: 60.8 bits (146), Expect = 8.310e-8
Identity = 37/78 (47.44%), Postives = 46/78 (58.97%), Query Frame = -2
Query:  183 STIAAVGDSLDHDILGALRNGMGSVFIAGGVHFDELGVA-QGAGDVPSDEAYSAAFAKHLGGASMSSVPTYVMPGLRW 413
            S + AVGDSL HDILGA R G  SVFIAGGVH+ ELG+  QG  ++P +E   A   ++   A      TY +P   W
Sbjct:  327 SRVLAVGDSLPHDILGANREGYPSVFIAGGVHYCELGLGRQGGSEMPDEERLRAVLDEYDVSA------TYCLPSFVW 398          
BLAST of mRNA_F-serratus_M_contig786.19131.1 vs. uniprot
Match: A0A8J5XKT1_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKT1_DIALT)

HSP 1 Score: 60.5 bits (145), Expect = 1.110e-7
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = -2
Query:  192 PSTIAAVGDSLDHDILGALRNGMGSVFIAGGVHFDELGVAQGAGDVPSDEAYSAAFAKHLGGASMSSVPTYVMPG 416
            P+ + AVGDS++HD+LGA R G+ ++ I GGVH  ELGV QG  + PS E  +A   ++         PT+V  G
Sbjct:  312 PARVVAVGDSMEHDVLGARRAGLDAILITGGVHAAELGVRQGVAETPSAERLAAFLERY----PADEWPTHVCAG 382          
BLAST of mRNA_F-serratus_M_contig786.19131.1 vs. uniprot
Match: A0A0M0JUP2_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JUP2_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 1.450e-7
Identity = 34/74 (45.95%), Postives = 42/74 (56.76%), Query Frame = -2
Query:  186 IAAVGDSLDHDILGALRNGMGSVFIAGGVHFDELGVAQGAGDVPSDEAYSAAFAKHLGGASMSSVPTYVMPGLR 407
            +AAVGDSL HD+LGA RNG+ S+    GVH  ELGV Q AG +P       A  +H G       PT+V+   R
Sbjct:  287 VAAVGDSLHHDVLGAARNGVDSILCCSGVHSTELGVPQ-AGALPPKPERLQALLEHFGREHEGVAPTHVLAAFR 359          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig786.19131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMI3_ECTSI1.670e-2169.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4D550_HETAK3.980e-1350.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A9V6S2_MONBE7.320e-947.37Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
R1FGE1_EMIHU1.060e-849.35Tentative p-Nitrophenyl phosphatase n=2 Tax=Emilia... [more]
A0A8K1CP86_PYTOL2.670e-841.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI0009F3B9B85.140e-845.00uncharacterized protein LOC110093466 n=1 Tax=Dendr... [more]
A0A7S0J5S4_9EUKA7.200e-865.00Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A0G4EGR2_VITBC8.310e-847.44Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A8J5XKT1_DIALT1.110e-742.67Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A0M0JUP2_9EUKA1.450e-745.95Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig786contigF-serratus_M_contig786:374002..374505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size506
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932336.488303-UTR-F-serratus_M_contig786:374001..3741991622932336.488303-UTR-F-serratus_M_contig786:374001..374199Fucus serratus maleUTRF-serratus_M_contig786 374002..374199 +
1690964259.6062636-UTR-F-serratus_M_contig786:374001..3741991690964259.6062636-UTR-F-serratus_M_contig786:374001..374199Fucus serratus maleUTRF-serratus_M_contig786 374002..374199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932336.5113583-CDS-F-serratus_M_contig786:374199..3745051622932336.5113583-CDS-F-serratus_M_contig786:374199..374505Fucus serratus maleCDSF-serratus_M_contig786 374200..374505 +
1690964259.6172063-CDS-F-serratus_M_contig786:374199..3745051690964259.6172063-CDS-F-serratus_M_contig786:374199..374505Fucus serratus maleCDSF-serratus_M_contig786 374200..374505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig786.19131.1prot_F-serratus_M_contig786.19131.1Fucus serratus malepolypeptideF-serratus_M_contig786 374200..374505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig786.19131.1

>prot_F-serratus_M_contig786.19131.1 ID=prot_F-serratus_M_contig786.19131.1|Name=mRNA_F-serratus_M_contig786.19131.1|organism=Fucus serratus male|type=polypeptide|length=102bp
MTYVGTLDMLAPPKCFAKAAEYASSLGTSPAPCATPSSSKCTPPAMNTEP
IPFLSAPKMSWSRESPTAAIVEGPNVTEWSSSFPASEAMCSCHAWVMGYT
VF
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mRNA from alignment at F-serratus_M_contig786:374002..374505+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig786.19131.1 ID=mRNA_F-serratus_M_contig786.19131.1|Name=mRNA_F-serratus_M_contig786.19131.1|organism=Fucus serratus male|type=mRNA|length=504bp|location=Sequence derived from alignment at F-serratus_M_contig786:374002..374505+ (Fucus serratus male)
GGATAACAATAATATGTCGGAATTTTTTCACCCAATTTCGCCTTCCTCAC GTCCTTCCCTGTGATGGTATCGCTAAGTTGGCTGTTAGCTAACGACCACC ACCATTGCGGTTGTTGAACACCATCATATATATATATATATCATAACCCA GCACCCTCAACTTGACCTACTTGACCGATTCACCATCTCAACCCCGGCAT GACGTACGTTGGCACGCTTGACATGCTTGCTCCTCCCAAATGCTTTGCGA AGGCTGCCGAGTATGCCTCATCACTAGGAACATCTCCAGCCCCCTGCGCT ACCCCGAGTTCGTCGAAGTGCACGCCTCCGGCGATGAATACAGAGCCCAT CCCGTTCCTCAGTGCCCCTAAAATGTCATGGTCAAGGGAGTCTCCAACGG CGGCGATTGTCGAAGGGCCCAATGTAACGGAATGGTCTTCGTCTTTCCCT GCCTCTGAGGCCATGTGTTCCTGCCACGCGTGGGTGATGGGATATACAGT ATTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig786:374002..374505+

>mRNA_F-serratus_M_contig786.19131.1 ID=mRNA_F-serratus_M_contig786.19131.1|Name=mRNA_F-serratus_M_contig786.19131.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig786:374002..374505+ (Fucus serratus male)
ATGACGTACGTTGGCACGCTTGACATGCTTGCTCCTCCCAAATGCTTTGC
GAAGGCTGCCGAGTATGCCTCATCACTAGGAACATCTCCAGCCCCCTGCG
CTACCCCGAGTTCGTCGAAGTGCACGCCTCCGGCGATGAATACAGAGCCC
ATCCCGTTCCTCAGTGCCCCTAAAATGTCATGGTCAAGGGAGTCTCCAAC
GGCGGCGATTGTCGAAGGGCCCAATGTAACGGAATGGTCTTCGTCTTTCC
CTGCCTCTGAGGCCATGTGTTCCTGCCACGCGTGGGTGATGGGATATACA
GTATTTATGACGTACGTTGGCACGCTTGACATGCTTGCTCCTCCCAAATG
CTTTGCGAAGGCTGCCGAGTATGCCTCATCACTAGGAACATCTCCAGCCC
CCTGCGCTACCCCGAGTTCGTCGAAGTGCACGCCTCCGGCGATGAATACA
GAGCCCATCCCGTTCCTCAGTGCCCCTAAAATGTCATGGTCAAGGGAGTC
TCCAACGGCGGCGATTGTCGAAGGGCCCAATGTAACGGAATGGTCTTCGT
CTTTCCCTGCCTCTGAGGCCATGTGTTCCTGCCACGCGTGGGTGATGGGA
TATACAGTATTT
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