mRNA_F-serratus_M_contig7851.19114.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig7851.19114.1
Unique Name	mRNA_F-serratus_M_contig7851.19114.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig7851.19114.1 vs. uniprot
Match: PSBA_ECTSI (Photosystem II protein D1 n=1129 Tax=Eukaryota TaxID=2759 RepID=PSBA_ECTSI)

HSP 1 Score: 701 bits (1809), Expect = 6.900e-255
Identity = 345/351 (98.29%), Postives = 348/351 (99.15%), Query Frame = 1

Query:    1 MVATLERRESEKRDWGTFATWVTSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEIL 1053
            MVATLERRE EKRDWGTFATW+TSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAAS+EEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILM PFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESV NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEIL
Sbjct:    1 MVATLERRE-EKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMRPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESV-NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEIL 349

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BLAST of mRNA_F-serratus_M_contig7851.19114.1 vs. uniprot
Match: A0A1N7TJI8_9PHAE (Photosystem II protein D1 n=412 Tax=Eukaryota TaxID=2759 RepID=A0A1N7TJI8_9PHAE)

HSP 1 Score: 697 bits (1799), Expect = 2.310e-253
Identity = 339/351 (96.58%), Postives = 347/351 (98.86%), Query Frame = 1

Query:    1 MVATLERRESEKRDWGTFATWVTSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEIL 1053
            MVATLERRE EKRDWGTFATW+TSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA S+EEWLYNGGPYQL+VFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESV NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPV+ IWLT+LG+STMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNE+L
Sbjct:    1 MVATLERRE-EKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEALSIEEWLYNGGPYQLVVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESV-NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVIAIWLTSLGISTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEVL 349

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BLAST of mRNA_F-serratus_M_contig7851.19114.1 vs. uniprot
Match: PSBA_PHATC (Photosystem II protein D1 n=590 Tax=root TaxID=1 RepID=PSBA_PHATC)

HSP 1 Score: 655 bits (1691), Expect = 6.660e-237
Identity = 321/351 (91.45%), Postives = 333/351 (94.87%), Query Frame = 1

Query:    1 MVATLERRESEKRDWGTFATWVTSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEIL 1053
            M ATLERR+S    W  F  W+TSTENRLYIGWFGCLM PTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNII+GAVIPSSNAIGIHFYPIWEAASV+EWLYNGGPYQLIV HFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES  NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTA+GVSTMAFNLNGFNFNQSVVDS+GRVINTWADIINRADLGMEVMHERNAHNFPLDLAS E+L
Sbjct:    1 MTATLERRQSVSL-WERFCGWITSTENRLYIGWFGCLMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIITGAVIPSSNAIGIHFYPIWEAASVDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENEST-NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWLTAMGVSTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEVL 349

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BLAST of mRNA_F-serratus_M_contig7851.19114.1 vs. uniprot
Match: A0A451FLR3_9STRA (Photosystem II protein D1 n=179 Tax=Eukaryota TaxID=2759 RepID=A0A451FLR3_9STRA)

HSP 1 Score: 646 bits (1666), Expect = 4.290e-233
Identity = 312/351 (88.89%), Postives = 330/351 (94.02%), Query Frame = 1

Query:    1 MVATLERRESEKRDWGTFATWVTSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEIL 1053
            M ATLERRE     W  F +W+TSTENRLYIGWFG LMIP LLTA SC+II FIAAPPVDIDGIREPVAGSLLYGNNIISGA++PSSNAIGIHFYPIWEAAS++EWLYNGGPYQLIVFHFL+GVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET +  S  NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTALG+STMAFNLNGFNFNQSVVDS+GRVINTWADI+NRA+LG+EVMHERNAHNFPLDLA + +L
Sbjct:    1 MTATLERREGTSL-WERFCSWITSTENRLYIGWFGVLMIPLLLTATSCFIIGFIAAPPVDIDGIREPVAGSLLYGNNIISGAIVPSSNAIGIHFYPIWEAASLDEWLYNGGPYQLIVFHFLLGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETEDGVSA-NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAIWPVVGIWLTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGIEVMHERNAHNFPLDLAVSNVL 349

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BLAST of mRNA_F-serratus_M_contig7851.19114.1 vs. uniprot
Match: A0A023JEK8_9STRA (Photosystem II protein D1 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A023JEK8_9STRA)

HSP 1 Score: 645 bits (1664), Expect = 8.660e-233
Identity = 314/351 (89.46%), Postives = 330/351 (94.02%), Query Frame = 1

Query:    1 MVATLERRESEKRDWGTFATWVTSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEIL 1053
            M ATLERRES    W  F  W+TSTENRLYIGWFGC+M PTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAV+PSSNAIGIH YPIWEAAS++EWLYNGGPYQLIV HF IGV  +MGREWELSYRLGMRPWIFVAFSAPVAAA+AVF++YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES  ++GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTA+G+STMAFNLNGFNFNQSVVDS+GRVINTWADIINRADLGMEVMHERNAHNFPLDLAS E+L
Sbjct:    1 MTATLERRESVSL-WERFCGWITSTENRLYIGWFGCVMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGIHLYPIWEAASIDEWLYNGGPYQLIVLHFFIGVCTYMGREWELSYRLGMRPWIFVAFSAPVAAAAAVFVVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESP-DFGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWLTAMGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEVL 349

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BLAST of mRNA_F-serratus_M_contig7851.19114.1 vs. uniprot
Match: A0A7S2RD40_9STRA (Photosystem II protein D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RD40_9STRA)

HSP 1 Score: 640 bits (1652), Expect = 9.120e-231
Identity = 310/350 (88.57%), Postives = 331/350 (94.57%), Query Frame = 1

Query:    1 MVATLERRESEKRDWGTFATWVTSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEI 1050
            M ATLERRES    W  F +W+TSTENRLYIGWFG +MIPTLLTA SC+II FIAAPPVDIDGIREPVAGSL+YGNNIISGAVIPSSNAIG+HFYPIWEAASV+EWLYNGGPYQLIV HFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET++ ES  N GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPV+GIW+TA+G+STMAFNLNGFNFNQSVVDSEGRVINTWADI+NRADLG+EVMHERNAHNFPLDLA+ E+
Sbjct:   13 MTATLERRESISL-WERFCSWITSTENRLYIGWFGVVMIPTLLTATSCFIIGFIAAPPVDIDGIREPVAGSLMYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTDSEST-NNGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVLGIWITAMGISTMAFNLNGFNFNQSVVDSEGRVINTWADILNRADLGIEVMHERNAHNFPLDLAAGEV 360

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BLAST of mRNA_F-serratus_M_contig7851.19114.1 vs. uniprot
Match: Q5SFY7_9PHAE (Photosystem II protein D1 (Fragment) n=10 Tax=Phaeophyceae TaxID=2870 RepID=Q5SFY7_9PHAE)

HSP 1 Score: 637 bits (1643), Expect = 2.970e-230
Identity = 311/320 (97.19%), Postives = 317/320 (99.06%), Query Frame = 1

Query:   40 DWGTFATWVTSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVM 999
            DWG FATW+TSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSE+ESV NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLT+LGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVM
Sbjct:    1 DWGHFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSELESV-NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVM 319

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BLAST of mRNA_F-serratus_M_contig7851.19114.1 vs. uniprot
Match: A0A3G2R049_9STRA (Photosystem II protein D1 n=23 Tax=cellular organisms TaxID=131567 RepID=A0A3G2R049_9STRA)

HSP 1 Score: 634 bits (1635), Expect = 1.690e-228
Identity = 306/346 (88.44%), Postives = 329/346 (95.09%), Query Frame = 1

Query:    1 MVATLERRESEKRDWGTFATWVTSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLA 1038
            M ATLER ES    W  F +W+TS ENRLYIGWFG +MIPTLLTA +C+IIAFIAAPPVDIDGIREPVAGSL+YGNNII+GA+IPSSNAIG+HFYPIWEAASV+EWLYNGGPYQLIV HFL GVAC++GREWELS+RLGMRPWIFVAFSAPVAAA+AVFLIYPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES  NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSR+LHFFLAAWPVVGIWLTALG+STMAFNLNGFNFNQS+VDS+GRVI+TWADI+NRA+LGMEVMHERNAHNFPLDLA
Sbjct:    1 MTATLERYES-LNIWERFCSWITSLENRLYIGWFGVVMIPTLLTATTCFIIAFIAAPPVDIDGIREPVAGSLMYGNNIITGAIIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLTGVACYLGREWELSFRLGMRPWIFVAFSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETAEGEST-NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWLTALGISTMAFNLNGFNFNQSIVDSQGRVISTWADILNRANLGMEVMHERNAHNFPLDLA 344

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BLAST of mRNA_F-serratus_M_contig7851.19114.1 vs. uniprot
Match: A0A223A8W4_TRETO (Photosystem II protein D1 n=8 Tax=Cannabaceae TaxID=3481 RepID=A0A223A8W4_TRETO)

HSP 1 Score: 634 bits (1634), Expect = 2.490e-228
Identity = 309/351 (88.03%), Postives = 330/351 (94.02%), Query Frame = 1

Query:    1 MVATLERRESEKRDWGTFATWVTSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEIL 1053
            M A LERRESE   WG F  W+TSTENRLYIGWFG LMIPTLLTA S +IIAFIAAPPVDIDGIREPV+GSLLYGNNIISGA+IP+S AIG+HFYPIWEAASV+EWLYNGGPY+LIV HFL+GVAC+MGREWELS+RLGMRPWI VA+SAPVAAA+AVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM GVAGVFGGSLFSAMHGSLVTSSLIRET+E ES  N GY+FGQEEETYNIVAAHGYFGRLIFQYASFNNSR+LHFFLAAWPVVGIW TALG+STMAFNLNGFNFNQSVVDS+GRVINTWADIINRA+LGMEVMHERNAHNFPLDLA+ E+L
Sbjct:    1 MTAILERRESESL-WGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESA-NEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEVL 349

[Close]

BLAST of mRNA_F-serratus_M_contig7851.19114.1 vs. uniprot
Match: A0A0U3UZA7_9MARC (Photosystem II protein D1 n=15 Tax=Eukaryota TaxID=2759 RepID=A0A0U3UZA7_9MARC)

HSP 1 Score: 633 bits (1633), Expect = 3.530e-228
Identity = 311/349 (89.11%), Postives = 328/349 (93.98%), Query Frame = 1

Query:    1 MVATLERRESEKRDWGTFATWVTSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNE 1047
            M ATLERRES    WG F  WVTSTENRLYIGWFG LMIPTLLTA S +IIAFIAAPPVDIDGIREPV+GSLLYGNNIISGA+IP+S AIG+HFYPIWEAASV+EWLYNGGPY+LIV HFL+GVAC+MGREWELSYRLGMRPWI VA+SAPVAAA+AVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM GVAGVFGGSLFSAMHGSLVTSSLIRET+E ES  N GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSR+LHFFLAAWPVVGIW TALG+STMAFNLNGFNFNQSVVDS+GRVINTWADIINRA+LGMEVMHERNAHNFPLDLA+ E
Sbjct:    1 MTATLERRESASI-WGRFCDWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESA-NAGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig7851.19114.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig7851.19114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
PSBA_ECTSI	6.900e-255	98.29	Photosystem II protein D1 n=1129 Tax=Eukaryota Tax...	[more]
A0A1N7TJI8_9PHAE	2.310e-253	96.58	Photosystem II protein D1 n=412 Tax=Eukaryota TaxI...	[more]
PSBA_PHATC	6.660e-237	91.45	Photosystem II protein D1 n=590 Tax=root TaxID=1 R...	[more]
A0A451FLR3_9STRA	4.290e-233	88.89	Photosystem II protein D1 n=179 Tax=Eukaryota TaxI...	[more]
A0A023JEK8_9STRA	8.660e-233	89.46	Photosystem II protein D1 n=4 Tax=Bacillariophyta ...	[more]
A0A7S2RD40_9STRA	9.120e-231	88.57	Photosystem II protein D1 n=1 Tax=Rhizochromulina ...	[more]
Q5SFY7_9PHAE	2.970e-230	97.19	Photosystem II protein D1 (Fragment) n=10 Tax=Phae...	[more]
A0A3G2R049_9STRA	1.690e-228	88.44	Photosystem II protein D1 n=23 Tax=cellular organi...	[more]
A0A223A8W4_TRETO	2.490e-228	88.03	Photosystem II protein D1 n=8 Tax=Cannabaceae TaxI...	[more]
A0A0U3UZA7_9MARC	3.530e-228	89.11	Photosystem II protein D1 n=15 Tax=Eukaryota TaxID...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig7851	contig	F-serratus_M_contig7851:7203..8264 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	706.8
Seed ortholog evalue	5e-201
Seed eggNOG ortholog	2880.D1J6Z2
Preferred name	psbA
KEGG ko	ko:K02703
KEGG Pathway	ko00195,ko01100,map00195,map01100
KEGG Module	M00161
Hectar predicted targeting category	signal anchor
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
EggNOG OGs	28IP8@1,2QR09@2759
EC	1.10.3.9
COG Functional cat.	C
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko00194,ko01000
Exons	1
Model size	1062
Cds size	1062
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932336.27066-CDS-F-serratus_M_contig7851:7202..8264	1622932336.27066-CDS-F-serratus_M_contig7851:7202..8264	Fucus serratus male	CDS	F-serratus_M_contig7851 7203..8264 +
1690964259.5488176-CDS-F-serratus_M_contig7851:7202..8264	1690964259.5488176-CDS-F-serratus_M_contig7851:7202..8264	Fucus serratus male	CDS	F-serratus_M_contig7851 7203..8264 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig7851.19114.1	prot_F-serratus_M_contig7851.19114.1	Fucus serratus male	polypeptide	F-serratus_M_contig7851 7203..8264 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig7851:7203..8264+
coding sequence from alignment at F-serratus_M_contig7851:7203..8264+

protein sequence of mRNA_F-serratus_M_contig7851.19114.1

>prot_F-serratus_M_contig7851.19114.1 ID=prot_F-serratus_M_contig7851.19114.1|Name=mRNA_F-serratus_M_contig7851.19114.1|organism=Fucus serratus male|type=polypeptide|length=354bp
MVATLERRESEKRDWGTFATWVTSTENRLYIGWFGCLMIPTLLTAASCYI
IAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA
ASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSA
PVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM
AGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVVNYGYKFGQEEETYNI
VAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLN
GFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEI
LWF*

mRNA from alignment at F-serratus_M_contig7851:7203..8264+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig7851.19114.1 ID=mRNA_F-serratus_M_contig7851.19114.1|Name=mRNA_F-serratus_M_contig7851.19114.1|organism=Fucus serratus male|type=mRNA|length=1062bp|location=Sequence derived from alignment at F-serratus_M_contig7851:7203..8264+ (Fucus serratus male)
ATGGTTGCAACTTTAGAAAGACGTGAAAGTGAAAAAAGAGATTGGGGAAC
ATTTGCTACATGGGTTACTAGTACTGAAAACCGTTTATACATCGGTTGGT
TTGGTTGTTTAATGATTCCTACATTATTAACAGCAGCTTCTTGCTACATC
ATCGCATTTATTGCAGCACCTCCTGTAGATATCGATGGTATTCGTGAACC
TGTAGCTGGATCTTTATTATATGGTAACAACATCATCAGTGGTGCTGTTA
TTCCTAGTTCAAACGCAATTGGTATACATTTTTACCCAATTTGGGAAGCT
GCTTCAGTTGAAGAATGGTTATACAACGGTGGTCCTTACCAATTAATCGT
ATTCCATTTCTTAATAGGTGTTGCTTGTTGGATGGGTCGTGAATGGGAAC
TTAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCT
CCAGTAGCAGCAGCTTCTGCAGTATTTTTAATTTACCCTATCGGTCAAGG
TAGTTTCTCTGATGGTATGCCTTTAGGTATTTCAGGTACATTCAACTTTA
TGATCGTTTTCCAAGCGGAACATAACATTTTAATGCACCCATTCCATATG
GCTGGTGTTGCTGGTGTTTTTGGTGGTTCATTATTTAGTGCTATGCATGG
TTCTTTAGTTACTTCAAGTTTAATTCGAGAAACAAGTGAAGTTGAATCTG
TTGTTAACTACGGTTATAAATTTGGACAAGAAGAAGAAACTTACAACATC
GTAGCTGCACATGGTTACTTTGGACGTTTAATTTTCCAATATGCTAGTTT
CAATAACTCTAGAGCTTTACATTTCTTCCTTGCAGCATGGCCTGTAGTTG
GGATTTGGTTAACAGCTTTAGGTGTAAGTACTATGGCATTCAACTTAAAT
GGTTTTAACTTCAACCAATCTGTTGTAGATAGTGAAGGTCGTGTTATCAA
CACATGGGCTGATATTATCAACCGTGCAGATTTAGGTATGGAAGTAATGC
ATGAACGTAACGCTCATAACTTCCCATTAGATTTAGCTTCTAATGAGATT
CTTTGGTTTTAG

Coding sequence (CDS) from alignment at F-serratus_M_contig7851:7203..8264+

>mRNA_F-serratus_M_contig7851.19114.1 ID=mRNA_F-serratus_M_contig7851.19114.1|Name=mRNA_F-serratus_M_contig7851.19114.1|organism=Fucus serratus male|type=CDS|length=2124bp|location=Sequence derived from alignment at F-serratus_M_contig7851:7203..8264+ (Fucus serratus male)
ATGGTTGCAACTTTAGAAAGACGTGAAAGTGAAAAAAGAGATTGGGGAAC
ATTTGCTACATGGGTTACTAGTACTGAAAACCGTTTATACATCGGTTGGT
TTGGTTGTTTAATGATTCCTACATTATTAACAGCAGCTTCTTGCTACATC
ATCGCATTTATTGCAGCACCTCCTGTAGATATCGATGGTATTCGTGAACC
TGTAGCTGGATCTTTATTATATGGTAACAACATCATCAGTGGTGCTGTTA
TTCCTAGTTCAAACGCAATTGGTATACATTTTTACCCAATTTGGGAAGCT
GCTTCAGTTGAAGAATGGTTATACAACGGTGGTCCTTACCAATTAATCGT
ATTCCATTTCTTAATAGGTGTTGCTTGTTGGATGGGTCGTGAATGGGAAC
TTAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCT
CCAGTAGCAGCAGCTTCTGCAGTATTTTTAATTTACCCTATCGGTCAAGG
TAGTTTCTCTGATGGTATGCCTTTAGGTATTTCAGGTACATTCAACTTTA
TGATCGTTTTCCAAGCGGAACATAACATTTTAATGCACCCATTCCATATG
GCTGGTGTTGCTGGTGTTTTTGGTGGTTCATTATTTAGTGCTATGCATGG
TTCTTTAGTTACTTCAAGTTTAATTCGAGAAACAAGTGAAGTTGAATCTG
TTGTTAACTACGGTTATAAATTTGGACAAGAAGAAGAAACTTACAACATC
GTAGCTGCACATGGTTACTTTGGACGTTTAATTTTCCAATATGCTAGTTT
CAATAACTCTAGAGCTTTACATTTCTTCCTTGCAGCATGGCCTGTAGTTG
GGATTTGGTTAACAGCTTTAGGTGTAAGTACTATGGCATTCAACTTAAAT
GGTTTTAACTTCAACCAATCTGTTGTAGATAGTGAAGGTCGTGTTATCAA
CACATGGGCTGATATTATCAACCGTGCAGATTTAGGTATGGAAGTAATGC
ATGAACGTAACGCTCATAACTTCCCATTAGATTTAGCTTCTAATGAGATT
CTTTGGTTTTAGATGGTTGCAACTTTAGAAAGACGTGAAAGTGAAAAAAG
AGATTGGGGAACATTTGCTACATGGGTTACTAGTACTGAAAACCGTTTAT
ACATCGGTTGGTTTGGTTGTTTAATGATTCCTACATTATTAACAGCAGCT
TCTTGCTACATCATCGCATTTATTGCAGCACCTCCTGTAGATATCGATGG
TATTCGTGAACCTGTAGCTGGATCTTTATTATATGGTAACAACATCATCA
GTGGTGCTGTTATTCCTAGTTCAAACGCAATTGGTATACATTTTTACCCA
ATTTGGGAAGCTGCTTCAGTTGAAGAATGGTTATACAACGGTGGTCCTTA
CCAATTAATCGTATTCCATTTCTTAATAGGTGTTGCTTGTTGGATGGGTC
GTGAATGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTA
GCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTTTTAATTTACCC
TATCGGTCAAGGTAGTTTCTCTGATGGTATGCCTTTAGGTATTTCAGGTA
CATTCAACTTTATGATCGTTTTCCAAGCGGAACATAACATTTTAATGCAC
CCATTCCATATGGCTGGTGTTGCTGGTGTTTTTGGTGGTTCATTATTTAG
TGCTATGCATGGTTCTTTAGTTACTTCAAGTTTAATTCGAGAAACAAGTG
AAGTTGAATCTGTTGTTAACTACGGTTATAAATTTGGACAAGAAGAAGAA
ACTTACAACATCGTAGCTGCACATGGTTACTTTGGACGTTTAATTTTCCA
ATATGCTAGTTTCAATAACTCTAGAGCTTTACATTTCTTCCTTGCAGCAT
GGCCTGTAGTTGGGATTTGGTTAACAGCTTTAGGTGTAAGTACTATGGCA
TTCAACTTAAATGGTTTTAACTTCAACCAATCTGTTGTAGATAGTGAAGG
TCGTGTTATCAACACATGGGCTGATATTATCAACCGTGCAGATTTAGGTA
TGGAAGTAATGCATGAACGTAACGCTCATAACTTCCCATTAGATTTAGCT
TCTAATGAGATTCTTTGGTTTTAG