mRNA_F-serratus_M_contig7851.19113.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7851.19113.1
Unique NamemRNA_F-serratus_M_contig7851.19113.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7851.19113.1 vs. uniprot
Match: A0A088CIH6_9CHLO (Photosystem I iron-sulfur center n=2 Tax=Chlorophyta TaxID=3041 RepID=A0A088CIH6_9CHLO)

HSP 1 Score: 127 bits (320), Expect = 7.040e-37
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLAAETTRSMGLAY 243
            MSH+V IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXX SVRVYL AETTRSMGLAY
Sbjct:    6 MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXXSVRVYLGAETTRSMGLAY 86
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BLAST of mRNA_F-serratus_M_contig7851.19113.1 vs. uniprot
Match: K9XT12_STAC7 (Photosystem I iron-sulfur center n=41 Tax=root TaxID=1 RepID=K9XT12_STAC7)

HSP 1 Score: 127 bits (319), Expect = 8.660e-37
Identity = 76/81 (93.83%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLAAETTRSMGLAY 243
            MSHSV IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIAS+PRTEDXXXXXXXXXXXXXXXLS+RVYL  ETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDXXXXXXXXXXXXXXXLSIRVYLGPETTRSMGLAY 81
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BLAST of mRNA_F-serratus_M_contig7851.19113.1 vs. uniprot
Match: A0A6I5NDM4_9CYAN (Photosystem I iron-sulfur center n=2 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=A0A6I5NDM4_9CYAN)

HSP 1 Score: 126 bits (317), Expect = 3.990e-36
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLAAETTRSMGLAY 243
            MSHSV IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIA++PRTEDXXXXXXXXXXXXXXXLS+RVYL  ETTRSMGLAY
Sbjct:   29 MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIAASPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 109
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BLAST of mRNA_F-serratus_M_contig7851.19113.1 vs. uniprot
Match: PSAC_SYNP2 (Photosystem I iron-sulfur center n=424 Tax=root TaxID=1 RepID=PSAC_SYNP2)

HSP 1 Score: 125 bits (313), Expect = 7.120e-36
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLAAETTRSMGLAY 243
            MSHSV IYDTCIGCTQCVRACP DVLEMVPWDGCKAGQIAS+PRTEDXXXXXXXXXXXXXXX S+RVYL AETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDXXXXXXXXXXXXXXXXSIRVYLGAETTRSMGLAY 81
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BLAST of mRNA_F-serratus_M_contig7851.19113.1 vs. uniprot
Match: PSAC_THEVB (Photosystem I iron-sulfur center n=199 Tax=cellular organisms TaxID=131567 RepID=PSAC_THEVB)

HSP 1 Score: 125 bits (313), Expect = 7.120e-36
Identity = 74/81 (91.36%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLAAETTRSMGLAY 243
            M+H+V IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIAS+PRTEDXXXXXXXXXXXXXXX S+RVYL AETTRSMGLAY
Sbjct:    1 MAHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDXXXXXXXXXXXXXXXXSIRVYLGAETTRSMGLAY 81
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BLAST of mRNA_F-serratus_M_contig7851.19113.1 vs. uniprot
Match: A0A097KM99_9CHLO (Photosystem I iron-sulfur center n=6 Tax=Chlorophyta TaxID=3041 RepID=A0A097KM99_9CHLO)

HSP 1 Score: 125 bits (314), Expect = 9.570e-36
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLAAETTRSMGLAY 243
            MSHSV IYDTCIGCTQCVRACPTDVLEMVPWDGCKA QIASAPRTEDXXXXXXXXXXXXXXX SVRVYL +ETTRSMGLAY
Sbjct:   23 MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKANQIASAPRTEDXXXXXXXXXXXXXXXXSVRVYLGSETTRSMGLAY 103
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BLAST of mRNA_F-serratus_M_contig7851.19113.1 vs. uniprot
Match: M1X443_9NOST (Photosystem I iron-sulfur center n=9 Tax=cellular organisms TaxID=131567 RepID=M1X443_9NOST)

HSP 1 Score: 124 bits (311), Expect = 1.440e-35
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLAAETTRSMGLAY 243
            MSH+V IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQ+A++PRTEDXXXXXXXXXXXXXXX S+RVYL AETTRSMGLAY
Sbjct:    1 MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQLAASPRTEDXXXXXXXXXXXXXXXXSIRVYLGAETTRSMGLAY 81
[Close]
BLAST of mRNA_F-serratus_M_contig7851.19113.1 vs. uniprot
Match: PSAC_ARATH (Photosystem I iron-sulfur center n=5680 Tax=cellular organisms TaxID=131567 RepID=PSAC_ARATH)

HSP 1 Score: 124 bits (310), Expect = 2.040e-35
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLAAETTRSMGLAY 243
            MSHSV IYDTCIGCTQCVRACPTDVLEM+PWDGCKA QIASAPRTEDXXXXXXXXXXXXXXXLSVRVYL  ETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLWHETTRSMGLAY 81
[Close]
BLAST of mRNA_F-serratus_M_contig7851.19113.1 vs. uniprot
Match: K9XI28_9CHRO (Photosystem I iron-sulfur center n=24 Tax=Bacteria TaxID=2 RepID=K9XI28_9CHRO)

HSP 1 Score: 124 bits (310), Expect = 2.100e-35
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLA-AETTRSMGLAY 243
            MSHSV IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIA++PRTEDXXXXXXXXXXXXXXXLS+RVYL+ AETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIAASPRTEDXXXXXXXXXXXXXXXLSIRVYLSNAETTRSMGLAY 82
[Close]
BLAST of mRNA_F-serratus_M_contig7851.19113.1 vs. uniprot
Match: PSAC_HELAN (Photosystem I iron-sulfur center n=529 Tax=Pentapetalae TaxID=1437201 RepID=PSAC_HELAN)

HSP 1 Score: 123 bits (308), Expect = 4.120e-35
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLAAETTRSMGLAY 243
            MSHSV IYDTCIGCTQCVRACPTDVLEM+PWDGCKA QIASAPRTEDXXXXXXXXXXXXXXXLSVRVYL  ETTRSMG+AY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLWHETTRSMGIAY 81
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7851.19113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A088CIH6_9CHLO7.040e-3795.06Photosystem I iron-sulfur center n=2 Tax=Chlorophy... [more]
K9XT12_STAC78.660e-3793.83Photosystem I iron-sulfur center n=41 Tax=root Tax... [more]
A0A6I5NDM4_9CYAN3.990e-3692.59Photosystem I iron-sulfur center n=2 Tax=unclassif... [more]
PSAC_SYNP27.120e-3692.59Photosystem I iron-sulfur center n=424 Tax=root Ta... [more]
PSAC_THEVB7.120e-3691.36Photosystem I iron-sulfur center n=199 Tax=cellula... [more]
A0A097KM99_9CHLO9.570e-3693.83Photosystem I iron-sulfur center n=6 Tax=Chlorophy... [more]
M1X443_9NOST1.440e-3590.12Photosystem I iron-sulfur center n=9 Tax=cellular ... [more]
PSAC_ARATH2.040e-3593.83Photosystem I iron-sulfur center n=5680 Tax=cellul... [more]
K9XI28_9CHRO2.100e-3592.68Photosystem I iron-sulfur center n=24 Tax=Bacteria... [more]
PSAC_HELAN4.120e-3592.59Photosystem I iron-sulfur center n=529 Tax=Pentape... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7851contigF-serratus_M_contig7851:6559..6804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.4e-28
Seed eggNOG ortholog2880.D1J7C7
Preferred namepsaC
KEGG koko:K02691
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00163
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009507,GO:0009521,GO:0009522,GO:0009532,GO:0009533,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009987,GO:0015979,GO:0016020,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0098796
EggNOG free text desc.photosynthetic electron transport in photosystem I
EggNOG OGs2S26M@2759,COG1145@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size246
Cds size246
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932336.2238488-CDS-F-serratus_M_contig7851:6558..68041622932336.2238488-CDS-F-serratus_M_contig7851:6558..6804Fucus serratus maleCDSF-serratus_M_contig7851 6559..6804 -
1690964259.5334377-CDS-F-serratus_M_contig7851:6558..68041690964259.5334377-CDS-F-serratus_M_contig7851:6558..6804Fucus serratus maleCDSF-serratus_M_contig7851 6559..6804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7851.19113.1prot_F-serratus_M_contig7851.19113.1Fucus serratus malepolypeptideF-serratus_M_contig7851 6559..6804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7851.19113.1

>prot_F-serratus_M_contig7851.19113.1 ID=prot_F-serratus_M_contig7851.19113.1|Name=mRNA_F-serratus_M_contig7851.19113.1|organism=Fucus serratus male|type=polypeptide|length=82bp
MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVG
CKRCETACPTDFLSVRVYLAAETTRSMGLAY*
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mRNA from alignment at F-serratus_M_contig7851:6559..6804-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7851.19113.1 ID=mRNA_F-serratus_M_contig7851.19113.1|Name=mRNA_F-serratus_M_contig7851.19113.1|organism=Fucus serratus male|type=mRNA|length=246bp|location=Sequence derived from alignment at F-serratus_M_contig7851:6559..6804- (Fucus serratus male)
ATGTCACATTCAGTCAATATCTACGACACATGCATCGGTTGTACACAGTG
TGTTCGTGCTTGTCCTACTGATGTATTAGAAATGGTTCCTTGGGATGGAT
GTAAAGCAGGTCAAATTGCTTCTGCACCACGTACTGAAGATTGTGTTGGT
TGCAAGCGTTGTGAAACTGCTTGTCCTACTGATTTTCTAAGTGTTCGCGT
TTATTTAGCTGCTGAAACAACACGTAGTATGGGATTAGCATATTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7851:6559..6804-

>mRNA_F-serratus_M_contig7851.19113.1 ID=mRNA_F-serratus_M_contig7851.19113.1|Name=mRNA_F-serratus_M_contig7851.19113.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig7851:6559..6804- (Fucus serratus male)
ATGTCACATTCAGTCAATATCTACGACACATGCATCGGTTGTACACAGTG
TGTTCGTGCTTGTCCTACTGATGTATTAGAAATGGTTCCTTGGGATGGAT
GTAAAGCAGGTCAAATTGCTTCTGCACCACGTACTGAAGATTGTGTTGGT
TGCAAGCGTTGTGAAACTGCTTGTCCTACTGATTTTCTAAGTGTTCGCGT
TTATTTAGCTGCTGAAACAACACGTAGTATGGGATTAGCATATTAAATGT
CACATTCAGTCAATATCTACGACACATGCATCGGTTGTACACAGTGTGTT
CGTGCTTGTCCTACTGATGTATTAGAAATGGTTCCTTGGGATGGATGTAA
AGCAGGTCAAATTGCTTCTGCACCACGTACTGAAGATTGTGTTGGTTGCA
AGCGTTGTGAAACTGCTTGTCCTACTGATTTTCTAAGTGTTCGCGTTTAT
TTAGCTGCTGAAACAACACGTAGTATGGGATTAGCATATTAA
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