mRNA_F-serratus_M_contig785.19104.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig785.19104.1
Unique NamemRNA_F-serratus_M_contig785.19104.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig785.19104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig785contigF-serratus_M_contig785:221506..227329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_002670.1
Exons4
Model size1270
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig785.19104.1prot_F-serratus_M_contig785.19104.1Fucus serratus malepolypeptideF-serratus_M_contig785 221647..226980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932334.1276612-UTR-F-serratus_M_contig785:221505..2216461622932334.1276612-UTR-F-serratus_M_contig785:221505..221646Fucus serratus maleUTRF-serratus_M_contig785 221506..221646 +
1690964258.3722808-UTR-F-serratus_M_contig785:221505..2216461690964258.3722808-UTR-F-serratus_M_contig785:221505..221646Fucus serratus maleUTRF-serratus_M_contig785 221506..221646 +
1622932334.2433872-UTR-F-serratus_M_contig785:226980..2273291622932334.2433872-UTR-F-serratus_M_contig785:226980..227329Fucus serratus maleUTRF-serratus_M_contig785 226981..227329 +
1690964258.4243555-UTR-F-serratus_M_contig785:226980..2273291690964258.4243555-UTR-F-serratus_M_contig785:226980..227329Fucus serratus maleUTRF-serratus_M_contig785 226981..227329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932334.1445987-CDS-F-serratus_M_contig785:221646..2217711622932334.1445987-CDS-F-serratus_M_contig785:221646..221771Fucus serratus maleCDSF-serratus_M_contig785 221647..221771 +
1690964258.3839307-CDS-F-serratus_M_contig785:221646..2217711690964258.3839307-CDS-F-serratus_M_contig785:221646..221771Fucus serratus maleCDSF-serratus_M_contig785 221647..221771 +
1622932334.1652176-CDS-F-serratus_M_contig785:225419..2257521622932334.1652176-CDS-F-serratus_M_contig785:225419..225752Fucus serratus maleCDSF-serratus_M_contig785 225420..225752 +
1690964258.3963034-CDS-F-serratus_M_contig785:225419..2257521690964258.3963034-CDS-F-serratus_M_contig785:225419..225752Fucus serratus maleCDSF-serratus_M_contig785 225420..225752 +
1622932334.1939197-CDS-F-serratus_M_contig785:226204..2262921622932334.1939197-CDS-F-serratus_M_contig785:226204..226292Fucus serratus maleCDSF-serratus_M_contig785 226205..226292 +
1690964258.4085438-CDS-F-serratus_M_contig785:226204..2262921690964258.4085438-CDS-F-serratus_M_contig785:226204..226292Fucus serratus maleCDSF-serratus_M_contig785 226205..226292 +
1622932334.2168064-CDS-F-serratus_M_contig785:226746..2269801622932334.2168064-CDS-F-serratus_M_contig785:226746..226980Fucus serratus maleCDSF-serratus_M_contig785 226747..226980 +
1690964258.416646-CDS-F-serratus_M_contig785:226746..2269801690964258.416646-CDS-F-serratus_M_contig785:226746..226980Fucus serratus maleCDSF-serratus_M_contig785 226747..226980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig785.19104.1

>prot_F-serratus_M_contig785.19104.1 ID=prot_F-serratus_M_contig785.19104.1|Name=mRNA_F-serratus_M_contig785.19104.1|organism=Fucus serratus male|type=polypeptide|length=260bp
MREQSSERAEGRIMQPRLASRRLSLRGALIMITWTVTSAFLPASPPPISP
SSSWVIAQDTRRLSAGSCNGRNRRTSGFHGVRRGVVARQSSEMVLGGLGG
SAGNLLPTVGTIVSGAIIDAQAHFAGSGIGAGMLLLAEDADSPGKMYARI
ATGGVAIAFSAVFGAYIIATLVANMSTEDLMKLNRDLAGGEEYEELERER
LSAQARLAALSEDIEDAKDPARSLAMAPDGVRERKMDKLTARTAAAAADI
ASIEDEYAD*
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mRNA from alignment at F-serratus_M_contig785:221506..227329+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig785.19104.1 ID=mRNA_F-serratus_M_contig785.19104.1|Name=mRNA_F-serratus_M_contig785.19104.1|organism=Fucus serratus male|type=mRNA|length=5824bp|location=Sequence derived from alignment at F-serratus_M_contig785:221506..227329+ (Fucus serratus male)
AACGAGCCCATTCTGCTTGGAGTCTCTGTGTGCGCTGCTTCCAAGAAATC
CCATTCGAAGCTTCTACTACTTAAAAGCACGGACCATAGTTCGAGTGAAA
GGACCGACTGGTCCGCTGAGACGTAAGAGATTGAGCGACACATGCGCGAG
CAAAGCTCCGAACGAGCAGAGGGAAGGATCATGCAGCCACGTTTAGCATC
CCGACGCCTTTCTCTGCGGGGAGCCTTGATCATGATCACTTGGACTGTGA
CGTCGGCCTTTCTCCCGTGAGTTCTGTCGCGTGTTCATGTGGAAAATCAG
TTCGAACTGAAATTTGATCATCGGTGCCATTGCATTTCGGCCTTGCTGTA
GCTTCCGCCTTCAGGCATGGCATCCAAATGGCTCACCAAGAGACCTAGAG
ATTGAGCGTCCACAGAGAGCACATACGAGGAGTGTAGACCTGTTTACACT
GTAACATGTTCTGGAGGCACAACATGAAATGCTCGGCTTACGGCGGCCGC
GTTTCCCCCCACGTTGCTCAACCGTTCCCCGGGTCTGACTCTAAACCCTG
ACGGTGCAGTACTCATGAATTATTTTCCCTTCGACATGCTGTACCCACTG
GTCGTGGGTATCATTTATGCCCCCTGAACGGTTGATCCTCCGGGGTGTTG
CTCCTGTAGAGCTACTATATAGTCTATAATGATACTGCGCGGTTTTGAGA
AGAGCTACAAAACTCCTATAATATGTACATTCCTACACGGTCGCCCCGGT
AGCTCAGAGGTAACCTCGTAACCTTCTGACACGATGGGACGTGAGTTCGA
TCCCGGCAAACGGGATTTTTCTCGCTAAAAACTTAAAACTAAAACAAGAA
TGCCCACGAGTGGAGAACGATTAAATCGTTAGTACACAAAATTCGACTTC
ACGGTCGACGAGGGAAAGGAATGGCCGAATCCTTCTCGCGAGAAAAATGA
AGGCACGCATCGCAGAAGGAAGGTGGATGAGAAATCATGTGTGACCCCGG
CTGGTACGTCCAACGAACTTGATGTCCAGAATGAATGGGAAGAAAACACA
CACACACACACACACTAGACTACAAGGAAGGTATGGTTACCGTTATTTTC
AAGATGCCCACTTCATACCGAATAGTGAATAGTAGAAAAAGAGGCGCACA
TTGATTGGTCCATTCATTGGTCCATGGCGACCTGCAAATGCAGCACCCGT
TACTGGAACTATCTTGAGGACTACTGGCTCTGTGCCGGCGGACTGTCTGC
AGCGAACGCCATCGGTTCGCAATGTCACGAGTCGATGAACTCGAGACTGA
CCCGATGGCGTATGGTGGTATCAATAAATGGAGGAAACCGGGCGAAATCC
CGTGAGTAACCACCAGGTTCAGCCTGATTGTGGAGAACGAGCAGGCTGAC
GCGGGACGGGACGGCTGAACCCGTCTCGCTAGACCAAATTCTCAAGGCGC
GAACGGGGACGGGGAAATATTCATTTTCCCTGTTCAGCTGACCACGAGCA
GGATTGGCAACCTTGCCCGGTTGATCCATACTCTTGCTATATGTGTGATG
GCCTTATATACATATAGTCTATGACTGCAGCTCTATTTACTTCATATCAT
CATGTTGGTTTTCCTGAACGAGCGCTCGGCGACTATGATATCCAGGAGCC
GAGTACGGAATATCCTGAGGCGATCTTATTATGGGGTGTCATGATCAGAA
CGCACTCAGAAGACATCTTCTTCATCGCGTGTTCGCGTTTGCGTGTGCAC
GCCACGCGCCGTTTGAGTGCTGCTGACCAGCTCGCAATACACTTGCACAG
TAGTAACGAGTAGCCCTAGGTAGATCCATACATGTACCACCTTCACAAGT
AGCTCTACTGTTGTACGTCTATTGAATAGTCCACAGCATTGTTGATTGTT
TAAAGAAAAATATGAACCCATATAGAGACCTTCTGAGCATTCCTCAGTTA
TTTAAAGAAAAATATTATCGCATCTAGATCTTCTGAGCATACTGTACTGT
ACTATACTGTACCCCAGTCGGTGGGAAAAAAAAATGTCAAAACATTTAGG
TGGGATCATAGGCTGCAAAAGACAAAACCTCTTCATGGTATTTAATCGGG
TTCCCCGATGGTAGTAACATTGGGTCAACAGTATAATGTTGGTAAGAAAC
CCACCGTTATACTGTACACTTGTTTGCTATGATCTCCGATGCTTTCAACA
TGCCCACTTCATACCAGTAGTGGGTGTTGGAAAAGAGGGGCGCATTGATT
GGTCATAGTCCATGGTGAAACCAAAAAAAGGCAGCGCCCGTCACTGAAAC
TACCTTGAGGACTTCTGGCCCTGTGCCGGCGGACGCTCGGCAGTGAACGC
CAATCGGTGCGCAACTGCGTGACCCGATAAACTCGGGATTGCCCCGATGG
CGTATGGCCGTAGCGGAAATCGGGAGAAATCCCATAAGCAAGCACCAGAT
TCATCCTGAGCGTGGAGAATGAGCAGGCTGACGCGGGACGGGACGGCCGA
ATCCGTGTCGCGAGACCAAATTCTCAGGCGCGAACGGGGACAGGGAAAAT
GTTCATTTTCTCTGTTCGGCTGACCACGAGCAGGATTGGCAACCTTACCC
GGTTGATCTGTATGGTCATCACTTATAGCAGAGCATGGATCAACCGGGTA
AGGATGCCAATCCTGCTCGTGGTCAGCTGGACAGGGAAAATGAGATAATC
ATTGTCCCCGTTCGTGCTATTTAACGCCTGAGAACTTGGTCTCACGGTAA
AGGTTCGGCCGTCCCGTCCCGCGTCAGCCTGCTCATCCTCCACACTAAGA
CATAATGTTGTGCTTACTCTCTGAATTCCTCCCGCTTTACGCGGTGGCGC
CCATTTATTCATACCGCCATCCCCTATCGGCTCAGTCCCGAGTTTTATCA
GGTCACGCAGTTGCGTACCGATGGCGTTCACTGCCGAGAGGCCGCCGGCC
AGGGCCAGCAGTCCTAGAAGGGTAGTTCCAGTAAACGGGTGCTGCCTTTT
TAGGTTTTACCATGGACCGATTGATGAGCGCGTGTCTTTTCCCACATTCA
TTAATGGTATGAAATTGGAGGCGGTGACCCTTAATCTGCTATATGTGTGA
TGACCATACATAGATGATCTACCGGTAGCCCTTGGTATTGGTTTGTCGTA
CAAATCATGGACTCAGCTCCTGCGCTTATTTTCTGTCTCCCTTCCCGTAA
GAGCACCGCAGTTGAAGTGTTGCGAGTTTTTCGCCATAATTACAATCTTG
CCTCTAGGGAAGGGAACCCAAATAAGAACTATACATGGCGTTTTTTTTAG
GCTGAAAGCCGCTGTAGCACTTTGATCCACTCAAAAACCTGAGTCACGTG
AGACCCCCGGGATATCACAGCAACTGATGTAAAAGAAGCGTGGATACTTG
GAGAGCTGCTATTATAGAGCATCCAGAGGTTTTCTGGAAAGCCATTGACA
GAAGGTTTTTCGTCTTGCAAGCAAGGGAAACTTGCGGCGGCGTAACTTTT
CAATTTAGAGCGGTTCGACGATTGGGGAGGGCGGGGATACGACGATTTCG
TCCCCGGGAGGTCACCAAAACAGCGCCTTCCGGGTATAGGGCCACATGAT
CCCCTACATGGTCGGCAAGCTTGCCCCGAATTCATCGCATTTGACCAGGG
GGTTGGTCAAATATGTCCCCGGTATGGGCTATTTTCGTGCCGTTCCCTCC
CAAAACGGGGACAAAACTGTTACATCCCCGCCCCCCCCAATCGTTGAACG
ATTCTTTATTGCATTTTTTTTCAAAGCAGCAAAACCTTGATGAACAGAAC
AGCAGTGCGGGGTGATGTTTTTTTTTTTTTTTTTTTCTACCCGCATCATT
TTTCGAATAATTTCATTACCTCCCTGGTTCCGATGCGTGGCCCGTAAAAC
TCTCTCGAAAACAGAGCAAGCCCCCCACCGATATCACCGTCATCAAGCTG
GGTGATTGCTCAAGACACTCGGCGGCTTAGCGCCGGCAGTTGTAACGGAA
GAAATCGAAGGACTAGCGGTTTCCACGGCGTTCGCCGAGGCGTAGTTGCT
CGTCAGTCGTCCGAAATGGTTTTGGGGGGGCTGGGAGGGAGCGCGGGAAA
TCTGCTGCCCACGGTCGGGACCATCGTGTCGGGCGCAATCATCGACGCGC
AAGCACATTTCGCTGGGTCGGGAATCGGGGCGGGGATGTTGCTGTTGGCT
GAGGATGCGGATTCTCCCGGCAAGATGTACGCCAGGATTGCCACAGGGTG
AGCGGAGCTTGAGGGCCAAGCCGTTATTGAGGGGCGACGAAGCATAGTAA
GGCCGTTCTACGGTGGCGCCTCATAAGAATCGATCCGCGACGTCGGGCCA
CTGATGGTAATGTCAACAAGTGGCTTGTTGTATGATTGGCGGACTCCTTG
GTGGTAGGAAGAGTTCCTGGGCGCATTGCTTTCGCTGGCGTGGTTAATCC
CCGACATTGTTAACAGGATCTGCGTGTCGCCAATCTGTTTCCCCTAGAGC
TAGCTCTACCTCTCTGATTCGAAACCAATATCTAAACGAGTTCGAACGCG
CGCGCATTCAGAAATTCGTGACCTCTCAGGGGGCGCTTTCGCGCACAATC
AGCGATGCCCCTTGCGCTCACCACTTCCTCGCCGCTCGCTGCCCGCCTAC
TGTTTACACGCCGGACCCGAAACACTCTCGTGGCTTGGAACTTCCAAAGA
GGCGTTGCGATCGCATTTTCTGCCGTCTTTGGTGCGTACATCATCGCCAC
ACTCGTCGCTAACATGTCGACCGAAGACCTCATGAAGGTGAGGAATCGTC
GTCCTCGCCCCTCTATTCCGACACCTCCCGCCCTTCCTCAGAGTAAGAGC
TATTAACAGAGCACTAGATGTACCAATGTTTTGACTTGTGTGGTTCGGTG
TGGACGGTGAAGAGGCGGCGTTGGTGGGCGATGAGCGTTGTTGGTTGCGG
TTGAAGAGAAAGCGACGCGCGATCCGGTTCGCGCTCGTAAATTTCCCGCC
TCGTGAGCGCACACAGCAGCGGTACGCAGCAGGTGGCAGTCAGTTTATTG
TTGTTATCTAAAGCCGATCCAGCTATTAAATATTAGCATTTTTCCGTGTA
TGAAGTGTGTGTTGTGTGACAGATCGCGCCCTCCCACCCTCTCATCACGC
CGATGGCAAAGCAGGACCGCAAACCCTACCTCTCTACTCAAGCCATTGTC
TTACCATCGCGCGGTTGGAAACTTGAATTCAATTCCTGCAGCTGAACAGA
GATCTCGCCGGAGGTGAAGAGTACGAGGAGCTCGAGAGGGAGAGGTTGAG
CGCCCAGGCAAGGTTGGCCGCCTTGTCGGAGGACATCGAAGACGCCAAAG
ATCCTGCGAGGAGCTTGGCGATGGCGCCGGACGGGGTGCGGGAGAGAAAG
ATGGACAAGCTCACCGCACGGACGGCGGCTGCGGCGGCGGACATCGCGTC
CATCGAAGACGAGTACGCGGATTAGTGTTCTAGCCGGAAATCAGCCTCTC
TGTTGAATCAGCGCTGACTCGTCTCATTGGCTTATTTTTGTTTCGAGTCT
AAAATGCAAATGGAGGGGAATTATTTCCTCGATTCCTGGGGACCCTGGAT
ACTCTTGGAAAAGAGTAAAGGCGACGCACAAAGTTGATGGGACGCTGGAA
ACCCCCTTAAACGTGTCAGCGCTGATCTCGTCTAGTCATTTAAAATCGAC
TACTTATTTATAGAAATCGATGTTGCTGCATGGGGTAGTTTATATGTTTG
CGTCGAGATGGCTGGAGAGGAGGCAGCGGAAAAACCGAACTTGTTTTAAG
AAAATTTTCGTCTGATGTTATGTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig785:221506..227329+

>mRNA_F-serratus_M_contig785.19104.1 ID=mRNA_F-serratus_M_contig785.19104.1|Name=mRNA_F-serratus_M_contig785.19104.1|organism=Fucus serratus male|type=CDS|length=1560bp|location=Sequence derived from alignment at F-serratus_M_contig785:221506..227329+ (Fucus serratus male)
ATGCGCGAGCAAAGCTCCGAACGAGCAGAGGGAAGGATCATGCAGCCACG
TTTAGCATCCCGACGCCTTTCTCTGCGGGGAGCCTTGATCATGATCACTT
GGACTGTGACGTCGGCCTTTCTCCCATGCGCGAGCAAAGCTCCGAACGAG
CAGAGGGAAGGATCATGCAGCCACGTTTAGCATCCCGACGCCTTTCTCTG
CGGGGAGCCTTGATCATGATCACTTGGACTGTGACGTCGGCCTTTCTCCC
AGCAAGCCCCCCACCGATATCACCGTCATCAAGCTGGGTGATTGCTCAAG
ACACTCGGCGGCTTAGCGCCGGCAGTTGTAACGGAAGAAATCGAAGGACT
AGCGGTTTCCACGGCGTTCGCCGAGGCGTAGTTGCTCGTCAGTCGTCCGA
AATGGTTTTGGGGGGGCTGGGAGGGAGCGCGGGAAATCTGCTGCCCACGG
TCGGGACCATCGTGTCGGGCGCAATCATCGACGCGCAAGCACATTTCGCT
GGGTCGGGAATCGGGGCGGGGATGTTGCTGTTGGCTGAGGATGCGGATTC
TCCCGGCAAGATGTACGCCAGGATTGCCACAGGAGCAAGCCCCCCACCGA
TATCACCGTCATCAAGCTGGGTGATTGCTCAAGACACTCGGCGGCTTAGC
GCCGGCAGTTGTAACGGAAGAAATCGAAGGACTAGCGGTTTCCACGGCGT
TCGCCGAGGCGTAGTTGCTCGTCAGTCGTCCGAAATGGTTTTGGGGGGGC
TGGGAGGGAGCGCGGGAAATCTGCTGCCCACGGTCGGGACCATCGTGTCG
GGCGCAATCATCGACGCGCAAGCACATTTCGCTGGGTCGGGAATCGGGGC
GGGGATGTTGCTGTTGGCTGAGGATGCGGATTCTCCCGGCAAGATGTACG
CCAGGATTGCCACAGGAGGCGTTGCGATCGCATTTTCTGCCGTCTTTGGT
GCGTACATCATCGCCACACTCGTCGCTAACATGTCGACCGAAGACCTCAT
GAAGAGGCGTTGCGATCGCATTTTCTGCCGTCTTTGGTGCGTACATCATC
GCCACACTCGTCGCTAACATGTCGACCGAAGACCTCATGAAGCTGAACAG
AGATCTCGCCGGAGGTGAAGAGTACGAGGAGCTCGAGAGGGAGAGGTTGA
GCGCCCAGGCAAGGTTGGCCGCCTTGTCGGAGGACATCGAAGACGCCAAA
GATCCTGCGAGGAGCTTGGCGATGGCGCCGGACGGGGTGCGGGAGAGAAA
GATGGACAAGCTCACCGCACGGACGGCGGCTGCGGCGGCGGACATCGCGT
CCATCGAAGACGAGTACGCGGATTAGCTGAACAGAGATCTCGCCGGAGGT
GAAGAGTACGAGGAGCTCGAGAGGGAGAGGTTGAGCGCCCAGGCAAGGTT
GGCCGCCTTGTCGGAGGACATCGAAGACGCCAAAGATCCTGCGAGGAGCT
TGGCGATGGCGCCGGACGGGGTGCGGGAGAGAAAGATGGACAAGCTCACC
GCACGGACGGCGGCTGCGGCGGCGGACATCGCGTCCATCGAAGACGAGTA
CGCGGATTAG
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