mRNA_F-serratus_M_contig785.19096.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig785.19096.1 vs. uniprot
Match: A0A6H5L1H1_9PHAE (Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H1_9PHAE) HSP 1 Score: 477 bits (1227), Expect = 2.020e-162 Identity = 234/310 (75.48%), Postives = 265/310 (85.48%), Query Frame = 1
Query: 1 QGQIFLDSFNPILDRAIRSRLLEGKREPCELNVSDFDDAMYTLEVTPENLASLSLSVFMSGWRELFANGGSEVLERVYRGMVARDARPGRSLTLTVDLDNPTVPPDQLLKSLTELKRNLMAAPFDRAFDALRAGRSASIPPAAIPWRKNEVVYIVPQEERVTVIFGIDFPEDDERAIAKASLLKASSFFFSFLMEFADAQRMVNNSPPCAFTPDAPLELRSMPMPPGRGPVGFLSFVIFPQHIDQGRQDKTVTLLTGFRNYLHYHLKATKIYMHMRMRKRVAGLLQVLNRAVPEEEAKAKKTAQGRAFNR 930
QGQIFLDSFNPIL+ AI+ RL+EGKREPCEL VSDFDD MYT+EV P NL++LSLS+ ++GW ++ +NGGSEVL Y+GM++ RPG +LT+T +LDNPTVP +QLLKSLTELKRNLMAAPFDRAFDALR GR S+PPAAIPWRKNEVVY+VPQ +RVT+IF IDF E DERAIAK SFLMEF DAQR+ NNSPPC FTPDAPLEL+SMPMPP PVGFLSFVIFPQH+D+GRQ+KT+TLLTGFRNYLHYHLKATK YMHMRMRKRV GLLQVL+RAVPEEEAKAKKTA+GR FNR
Sbjct: 8 QGQIFLDSFNPILENAIKPRLMEGKREPCELKVSDFDDVMYTVEVPPNNLSTLSLSIAINGWDQISSNGGSEVLATKYQGMISPQVRPGHNLTITTNLDNPTVPAEQLLKSLTELKRNLMAAPFDRAFDALREGRGGSVPPAAIPWRKNEVVYVVPQADRVTIIFAIDFTESDERAIAK-----------SFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQVLSRAVPEEEAKAKKTAKGRTFNR 306
BLAST of mRNA_F-serratus_M_contig785.19096.1 vs. uniprot
Match: D7FR30_ECTSI (Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR30_ECTSI) HSP 1 Score: 309 bits (791), Expect = 9.570e-99 Identity = 154/191 (80.63%), Postives = 164/191 (85.86%), Query Frame = 1
Query: 358 MAAPFDRAFDALRAGRSASIPPAAIPWRKNEVVYIVPQEERVTVIFGIDFPEDDERAIAKASLLKASSFFFSFLMEFADAQRMVNNSPPCAFTPDAPLELRSMPMPPGRGPVGFLSFVIFPQHIDQGRQDKTVTLLTGFRNYLHYHLKATKIYMHMRMRKRVAGLLQVLNRAVPEEEAKAKKTAQGRAFNR 930
MAAPFDRAFDALR GR S+PPAAIPWRKNEVVY+VPQ +RVTVIF IDF E DERAIAK SFLMEF DAQR+ NNSPPC FTPDAPLEL+SMPMPP PVGFLSFVIFPQH+D+GRQ+KT+TLLTGFRNYLHYHLKATK YMHMRMRKRV GLLQVLNRAVPEEEAKAKKTA+GR FNR
Sbjct: 1 MAAPFDRAFDALREGRGGSVPPAAIPWRKNEVVYVVPQADRVTVIFAIDFTESDERAIAK-----------SFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQVLNRAVPEEEAKAKKTAKGRTFNR 180
BLAST of mRNA_F-serratus_M_contig785.19096.1 vs. uniprot
Match: A0A835ZH76_9STRA (Arp2/3 complex 34 kDa subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH76_9STRA) HSP 1 Score: 234 bits (598), Expect = 4.030e-70 Identity = 124/194 (63.92%), Postives = 145/194 (74.74%), Query Frame = 1
Query: 355 LMAAPFDRAFDALRAGRSASIPPAAIPWRKNEVVYIVPQEERVTVIFGIDFPEDDERAIAKASLLKASSFFFSFLMEFADAQRMVNNSPPCAFTPDAPLELRSMPMPPGRG-PVGFLSFVIFPQHIDQGRQDKTVTLLTGFRNYLHYHLKATKIYMHMRMRKRVAGLLQVLNRAVPEEEAKAKKTAQGRAFNRA 933
++ APF +AF +L G+S S+P +PWRK+E V+IVPQ +RVTVIF +DF E DERA+ K FLMEFADAQR NN+PP F +APLELRS + RG PVGFLSF+IFPQH+ +GR + VTLLTGFRNYLHYH+KATK YMHMRMRKRV GLLQVLNRAVPE E KAKKTAQG+ F RA
Sbjct: 1 MLGAPFTKAFASLLGGQSGSLPMMTLPWRKSEDVFIVPQADRVTVIFALDFAEQDERALCKV-----------FLMEFADAQRSANNAPPTNFALEAPLELRSARV---RGKPVGFLSFIIFPQHVQEGRLESCVTLLTGFRNYLHYHIKATKTYMHMRMRKRVVGLLQVLNRAVPEAEEKAKKTAQGKTFVRA 180
BLAST of mRNA_F-serratus_M_contig785.19096.1 vs. uniprot
Match: A0A7S2RYF9_9STRA (Arp2/3 complex 34 kDa subunit n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYF9_9STRA) HSP 1 Score: 216 bits (549), Expect = 5.790e-61 Identity = 128/320 (40.00%), Postives = 189/320 (59.06%), Query Frame = 1
Query: 1 QGQIFLDSFNPILDRAIRSRLLEG--KREPCELNVSDFDDAMYTLEVTPENLASLSLSVFMS--GWRELFANGGSEVLERVYRGM-VARDARPGRSLTLTVDLDNPTVPPDQLLKSLTELKRNLMAAPFDRAFDALRAGRSASIPPAAIPWRKNEVVYIVPQEERVTVIFGIDFPEDDERAIAKASLLKASSFFFSFLMEFADAQRMVNNSPPCAFTP--DAPLELRSMP-MPPGRGPVGFLSFVIFPQHIDQGRQ-DKTVTLLTGFRNYLHYHLKATKIYMHMRMRKRVAGLLQVLNRAVPEEEAKAKKTAQGRAFNRA 933
+G IFL N IL+ AI +RL + +REPCE+ ++DFDD + VTP+ L +++ + M G R G EV++ Y GM + DA G + DLD+P P LL + +R L+AAP +AF L+ G A++P I R NE ++I P +R T+I+ + FPE+ +RA+A+ L +FA VN++PPC ++ + P+E+R +P + GF+SFV+FP H+ + DK+ +L FRNYLHYH+KA+K Y+HMRMR++V G +QVLNRAV E+E +A KTA G+ F RA
Sbjct: 19 EGMIFLKPQNMILEEAIGTRLFDDPPRREPCEVTMADFDDVKLKVVVTPDRLNFVAVHISMGPLGKRLKTDLYGQEVMDETYPGMSITPDA--GFDFAIGFDLDSPPEDPQVLLNKVANFRRYLLAAPITKAFKGLKNGTGATLPLMHIETRPNEAMFIKPGADRCTIIYALSFPEETDRALARV-----------MLQQFAKESSKVNSAPPCQYSEAKNPPMEVRELPGIDKYSTTCGFISFVVFPSHVSSDAKFDKSAAMLANFRNYLHYHIKASKTYLHMRMRRKVQGWMQVLNRAVHEQEKEA-KTASGKTFKRA 324
BLAST of mRNA_F-serratus_M_contig785.19096.1 vs. uniprot
Match: T0RSJ4_SAPDV (Arp2/3 complex 34 kDa subunit n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RSJ4_SAPDV) HSP 1 Score: 215 bits (547), Expect = 5.920e-61 Identity = 133/317 (41.96%), Postives = 192/317 (60.57%), Query Frame = 1
Query: 10 IFLDSFNPILDRAIRSRLLEGKR---EPCELNVSDFDDAMYTLEVTPENLASLSLSVFMSGWRELFANGGSEVLERVYRGMVARDARPGRSLTLTVDLDNPTVPPDQ---LLKSLTELKRNLMAAPFDRAFDALRAGRSASIPPAAIPWRKNEVVYIVPQEERVTVIFGIDFPEDDERAIAKASLLKASSFFFSFLMEFADAQRMVNNSPPCAFTPDAPLELRSMP-MPPGRGPVGFLSFVIFPQHID-QGRQDKTVTLLTGFRNYLHYHLKATKIYMHMRMRKRVAGLLQVLNRAVPEEE-AKA-KKTAQGRAFNR 930
IFL++ + I+ ++ RL E EP E+ + DFDD Y L + EN S+S+S EL G + +L VY +PG LT+ ++D + P+ ++ ++ LKRNL++APFD F AL A S+S+ P IP+R+ E +Y++PQ +R+ ++F + F + ++AIA+ FL EFA+A+R VNN+PP +F D PLELR +P + VG+LSF IF HID ++ K TL+ GFRNYLHYH+KA+K YMH+RMRKRV LLQVLNRA P ++ +KA KKT G+ F+R
Sbjct: 2 IFLENESKIVQEVLQGRLGEAAPRPVEPLEIRLCDFDDVQYDLSIQ-ENTLSVSMSY--PPVVELVKFGAANMLASVYPEFTLTAPKPGFDLTMVANVD--AITPENATNVIDRISLLKRNLLSAPFDHCFLALHADASSSLSPIQIPFRRQETIYVLPQADRIVIVFSVAFQDKTDQAIARI-----------FLQEFAEARRHVNNAPPVSFGKDPPLELRGVPNLRQSTDHVGYLSFAIFKTHIDTDAKRAKACTLIQGFRNYLHYHIKASKTYMHIRMRKRVDLLLQVLNRAQPAKDPSKATKKTITGKTFDR 302
BLAST of mRNA_F-serratus_M_contig785.19096.1 vs. uniprot
Match: A0A024U441_9STRA (Arp2/3 complex 34 kDa subunit n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U441_9STRA) HSP 1 Score: 214 bits (545), Expect = 1.150e-60 Identity = 127/317 (40.06%), Postives = 190/317 (59.94%), Query Frame = 1
Query: 10 IFLDSFNPILDRAIRSRLLEGKR---EPCELNVSDFDDAMYTLEVTPENLASLSLSVFMSGWRELFANGGSEVLERVYRGMVARDARPGRSLTLTVDLDNPTVPPDQ---LLKSLTELKRNLMAAPFDRAFDALRAGRSASIPPAAIPWRKNEVVYIVPQEERVTVIFGIDFPEDDERAIAKASLLKASSFFFSFLMEFADAQRMVNNSPPCAFTPDAPLELRSMP-MPPGRGPVGFLSFVIFPQHID-QGRQDKTVTLLTGFRNYLHYHLKATKIYMHMRMRKRVAGLLQVLNRAVPEEEAK--AKKTAQGRAFNR 930
IFL++ + I+ + RL E +P E+ + DFDD Y + + +LS+S+ + EL G + +L +VY +PG LTL ++D T+ P ++ + LKRN++ AP D F AL AG++ + P IP+R+ E +YI+PQ++R+ ++F + F + ++AIA+ FL EFA+A+R VNN+PP +F D PLELR++ + P VG+LSF IF HID +++K TLL GFRNYLHYH+KA+K Y+H+RMRKRV LLQVLNRA P ++ +KKT G+ F+R
Sbjct: 2 IFLENESKIVQEVLLGRLGEAAPRPVDPLEIRLCDFDDVQYDISIQG---TALSVSMAYRPYIELQKFGAANMLAKVYPEFQVTAPKPGFELTLVANVD--TITPQNAASVVNRIASLKRNILGAPLDHCFLALHAGQAKVLSPIQIPFRRQETIYILPQDDRIVIVFSVAFQDKTDQAIARV-----------FLQEFAEARRHVNNAPPVSFGKDPPLELRAVSGLRPCADHVGYLSFAIFKSHIDTDAKREKACTLLQGFRNYLHYHIKASKTYLHIRMRKRVDLLLQVLNRAQPPKDPTKTSKKTITGKTFDR 302
BLAST of mRNA_F-serratus_M_contig785.19096.1 vs. uniprot
Match: A0A067CQD1_SAPPC (Arp2/3 complex 34 kDa subunit n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CQD1_SAPPC) HSP 1 Score: 213 bits (542), Expect = 3.140e-60 Identity = 132/317 (41.64%), Postives = 191/317 (60.25%), Query Frame = 1
Query: 10 IFLDSFNPILDRAIRSRLLEGKR---EPCELNVSDFDDAMYTLEVTPENLASLSLSVFMSGWRELFANGGSEVLERVYRGMVARDARPGRSLTLTVDLDNPTVPPDQ---LLKSLTELKRNLMAAPFDRAFDALRAGRSASIPPAAIPWRKNEVVYIVPQEERVTVIFGIDFPEDDERAIAKASLLKASSFFFSFLMEFADAQRMVNNSPPCAFTPDAPLELRSMP-MPPGRGPVGFLSFVIFPQHIDQ-GRQDKTVTLLTGFRNYLHYHLKATKIYMHMRMRKRVAGLLQVLNRAVPEEE-AKA-KKTAQGRAFNR 930
IFL++ + I+ ++ RL E EP E+ + DFDD Y L + EN S+S+S EL G + +L VY +PG +T+ ++D + P+ ++ + LKRNL++APFD F AL A S+S+ P IP+R+ E +Y++PQ +R+ ++F + F + ++AIA+ FL EFA+A+R VNN+PP +F D PLELR +P + VG+LSF IF HID ++ K TL+ GFRNYLHYH+KA+K YMH+RMRKRV LLQVLNRA P ++ +KA KKT G+ F+R
Sbjct: 2 IFLENESKIVQEVLQGRLGETAPRPVEPLEIRLCDFDDVQYDLSIQ-ENTLSVSMSY--PPVVELVKFGAANMLANVYPEFTLTAPKPGFDMTMVANVD--AITPENATNVIDRIALLKRNLLSAPFDHCFLALHADASSSLSPIQIPFRRQETIYVLPQADRIVIVFSVAFQDKTDQAIARI-----------FLQEFAEARRHVNNAPPVSFGKDPPLELRGVPNLRQSTDHVGYLSFAIFKTHIDSDAKRAKACTLVQGFRNYLHYHIKASKTYMHIRMRKRVDLLLQVLNRAQPAKDPSKATKKTITGKTFDR 302
BLAST of mRNA_F-serratus_M_contig785.19096.1 vs. uniprot
Match: A0A7S0XD73_9STRA (Arp2/3 complex 34 kDa subunit n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XD73_9STRA) HSP 1 Score: 212 bits (540), Expect = 5.120e-60 Identity = 121/311 (38.91%), Postives = 185/311 (59.49%), Query Frame = 1
Query: 1 QGQIFLDSFNPILDRAIRSRLLEGKREPCELNVSDFDDAMYTLEVTPENLASLSLSVFMSGWRELFANGGSEVLERVYRGMVARDARPGRSLTLTVDLDNPTVP-PDQLLKSLTELKRNLMAAPFDRAFDALRAGRSASIPPAAIPWRKNEVVYIVPQEERVTVIFGIDFPEDDERAIAKASLLKASSFFFSFLMEFADAQRMVNNSPPCAFTPDAPLELRSMPMPPGRGPVGFLSFVIFPQHIDQGRQDKTVTLLTGFRNYLHYHLKATKIYMHMRMRKRVAGLLQVLNRAVPEEEAKAKKTAQGRAFNR 930
+G +FLDS N IL ++SRLLEG R+ CE SDFDD Y + +N+ +++ M G EL ++G V++R++ G+ + P + + ++ P +LL ++ELKRNL++ P + AFDAL + S +P I +R NE +++ P ++ VIF +DF + ++++A+ FL EF +AQR + +PP F+ + PLEL ++ GFLSF + +HI ++ +TLLTGFR+YL+YH+K +K Y+HMRMRK+VAG LQVLNRA PE E + KKT G+ F R
Sbjct: 4 KGLVFLDSKNAILLETLQSRLLEGNRDECEFEFSDFDDVSYRVLCQGDNI---KVNISMRGLNELRSSGTDLVIDRLFPGL---EVNPDPKYDFAIQFNISSISNPQKLLTDISELKRNLLSGPIEVAFDALLSKTSNHLPITIINYRPNETIFVCPAPAKIVVIFLVDFNDITDKSLARI-----------FLQEFVEAQRSIRTAPPVNFSREPPLELANLRFTYNPDATGFLSFGLEERHITGDKKQTAITLLTGFRSYLYYHIKCSKTYLHMRMRKKVAGWLQVLNRARPEIETE-KKTMGGKTFVR 296
BLAST of mRNA_F-serratus_M_contig785.19096.1 vs. uniprot
Match: A0A8K1FEV5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEV5_PYTOL) HSP 1 Score: 206 bits (525), Expect = 8.800e-58 Identity = 119/315 (37.78%), Postives = 188/315 (59.68%), Query Frame = 1
Query: 10 IFLDSFNPILDRAIRSRLLEGKR---EPCELNVSDFDDAMYTLEVTPENLASLSLSVFMSGWRELFANGGSEVLERVYRGMVARDARPGRSLTLTVDLDNPT-VPPDQLLKSLTELKRNLMAAPFDRAFDALRAGRSASIPPAAIPWRKNEVVYIVPQEERVTVIFGIDFPEDDERAIAKASLLKASSFFFSFLMEFADAQRMVNNSPPCAFTPDAPLELRSMP-MPPGRGPVGFLSFVIFPQHIDQG-RQDKTVTLLTGFRNYLHYHLKATKIYMHMRMRKRVAGLLQVLNRAVPEEEA--KAKKTAQGRAFNR 930
+FL+S N I+ + RL E EP E+ + DFDD Y + + +LS+S+ + ++ + G +L + Y ++ G LTL ++D+ T ++ + LKRN+++APF++ F+AL+ G ++ + IP+R+NE +Y++PQ +R+ +++ + F + ++AIA+ FL EF D +R VNN+PP AF+ D PLELR P + VG+LS IFP H+D ++ K +L+ G RNYLHYH+KA+K ++H+RMRKRV LLQVLNRA PE++ +AKKT GR F+R
Sbjct: 2 LFLESENKIIKDVLEGRLGEKAPRPVEPLEIRLCDFDDVQYDISIANN---TLSVSLAYAPYKHVAPLGAQNMLSKTYPEFQVVASKSGFDLTLQANVDSITPANAASVISRIALLKRNIISAPFEQCFEALKGGSASGLGAVQIPFRRNETMYVLPQADRIVIVYSVCFEDKTDQAIARV-----------FLQEFVDTRRTVNNAPPVAFSKDPPLELRGAPGLRNSADLVGYLSLAIFPTHVDTDEKRAKAASLVQGLRNYLHYHIKASKTHLHIRMRKRVDLLLQVLNRARPEKDPSKQAKKTISGRTFSR 302
BLAST of mRNA_F-serratus_M_contig785.19096.1 vs. uniprot
Match: G4Z955_PHYSP (Arp2/3 complex 34 kDa subunit n=30 Tax=Peronosporaceae TaxID=4777 RepID=G4Z955_PHYSP) HSP 1 Score: 205 bits (521), Expect = 3.330e-57 Identity = 127/317 (40.06%), Postives = 186/317 (58.68%), Query Frame = 1
Query: 10 IFLDSFNPILDRAIRSRLLEGKREPC---ELNVSDFDDAMYTLEVTPENLASLSLSVFMSGWRELFANGGSEVLERVYRG--MVARDARPGRSLTLTVDLDNPTVPPDQLLKSLTELKRNLMAAPFDRAFDALRAGRSASIPPAAIPWRKNEVVYIVPQEERVTVIFGIDFPEDDERAIAKASLLKASSFFFSFLMEFADAQRMVNNSPPCAFTPDAPLELRSMP-MPPGRGPVGFLSFVIFPQHIDQG-RQDKTVTLLTGFRNYLHYHLKATKIYMHMRMRKRVAGLLQVLNRAVPEEEAKA--KKTAQGRAFNRA 933
+FL+S N I+ + RL E P E+ + DFDD Y L + +NL L++S+ ++ L G +++ Y +VA A SL + VDL P + ++ LKRN++ APF++ F+AL+ G ++S+ P IP+R+NE +Y++PQ +R+ +++ + F + ++AIA+ FL EF D +R VNN+PP AF D PLELR P + VG+LS IFP H+D ++ K TL+ G RNYLHYH+KA+K Y+H+RMRKRV LLQVLNRA PE++ KKT GR F RA
Sbjct: 2 LFLESENKIIKEVLEGRLGEKAPRPVPPLEIRLCDFDDVQYDLSIA-DNL--LTVSMAYPPYKTLEGLGVTQMFAATYPECQLVAAKAGFDFSLQVNVDLITPANA-SSFIDRISVLKRNILGAPFEQCFEALQNGNASSLGPVQIPYRRNETIYVLPQADRIVIVYSVCFDDKTDQAIARV-----------FLQEFVDTRRTVNNAPPVAFGKDPPLELRGAPGLRNSPDLVGYLSIAIFPTHVDTTEKRIKAATLVQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQVLNRARPEKDQSKTQKKTITGRTFARA 303 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig785.19096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig785.19096.1 >prot_F-serratus_M_contig785.19096.1 ID=prot_F-serratus_M_contig785.19096.1|Name=mRNA_F-serratus_M_contig785.19096.1|organism=Fucus serratus male|type=polypeptide|length=273bp MYTLEVTPENLASLSLSVFMSGWRELFANGGSEVLERVYRGMVARDARPGback to top mRNA from alignment at F-serratus_M_contig785:105096..109560- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig785.19096.1 ID=mRNA_F-serratus_M_contig785.19096.1|Name=mRNA_F-serratus_M_contig785.19096.1|organism=Fucus serratus male|type=mRNA|length=4465bp|location=Sequence derived from alignment at F-serratus_M_contig785:105096..109560- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig785:105096..109560- >mRNA_F-serratus_M_contig785.19096.1 ID=mRNA_F-serratus_M_contig785.19096.1|Name=mRNA_F-serratus_M_contig785.19096.1|organism=Fucus serratus male|type=CDS|length=1638bp|location=Sequence derived from alignment at F-serratus_M_contig785:105096..109560- (Fucus serratus male)back to top |