mRNA_F-serratus_M_contig785.19103.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig785.19103.1
Unique NamemRNA_F-serratus_M_contig785.19103.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig785.19103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig785contigF-serratus_M_contig785:219427..221121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size278
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig785.19103.1prot_F-serratus_M_contig785.19103.1Fucus serratus malepolypeptideF-serratus_M_contig785 219427..221121 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932332.6674578-CDS-F-serratus_M_contig785:219426..2194891622932332.6674578-CDS-F-serratus_M_contig785:219426..219489Fucus serratus maleCDSF-serratus_M_contig785 219427..219489 -
1690964257.805207-CDS-F-serratus_M_contig785:219426..2194891690964257.805207-CDS-F-serratus_M_contig785:219426..219489Fucus serratus maleCDSF-serratus_M_contig785 219427..219489 -
1622932332.6881697-CDS-F-serratus_M_contig785:219753..2198491622932332.6881697-CDS-F-serratus_M_contig785:219753..219849Fucus serratus maleCDSF-serratus_M_contig785 219754..219849 -
1690964257.821621-CDS-F-serratus_M_contig785:219753..2198491690964257.821621-CDS-F-serratus_M_contig785:219753..219849Fucus serratus maleCDSF-serratus_M_contig785 219754..219849 -
1622932332.7495635-CDS-F-serratus_M_contig785:221004..2211211622932332.7495635-CDS-F-serratus_M_contig785:221004..221121Fucus serratus maleCDSF-serratus_M_contig785 221005..221121 -
1690964257.8415895-CDS-F-serratus_M_contig785:221004..2211211690964257.8415895-CDS-F-serratus_M_contig785:221004..221121Fucus serratus maleCDSF-serratus_M_contig785 221005..221121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig785.19103.1

>prot_F-serratus_M_contig785.19103.1 ID=prot_F-serratus_M_contig785.19103.1|Name=mRNA_F-serratus_M_contig785.19103.1|organism=Fucus serratus male|type=polypeptide|length=92bp
SRTAGGADPPQQRHEATAGTAPYKATRFGLTVAIMDIEQGLTAPGAIACA
QLGAFAAQQLIDPTSGGPPQQGMLSPVAGALVDGPELEAESG
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mRNA from alignment at F-serratus_M_contig785:219427..221121-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig785.19103.1 ID=mRNA_F-serratus_M_contig785.19103.1|Name=mRNA_F-serratus_M_contig785.19103.1|organism=Fucus serratus male|type=mRNA|length=1695bp|location=Sequence derived from alignment at F-serratus_M_contig785:219427..221121- (Fucus serratus male)
TCACGAACAGCAGGAGGAGCAGACCCTCCACAGCAGCGCCACGAGGCCAC
AGCGGGAACAGCACCATACAAGGCCACGAGATTCGGGCTGACCGTTGCTA
TCATGGATATTGAACAGGTAAACGAGCGAGACAGGTAAGGGATGAGCTCT
ACCCACGATAATATGGCAGGCCTCACGAGAGGGATTGTGCTTGTGGTTTG
TTTGGTTGGGGACAAGAAACACAAACACACACGCACATGTGCATGTTGGT
AGATTATAACACACGTGAAGACACATGTGTGTGTGTGTTTGTGTTCTTGT
CCCCAACCAGACAAACCCCAAGCACAATCCCTCTAGTGAGGCCTGCCATA
TCATCGTGGGTAGAGTTCATCCCTTATGCAGGCCCTGTGCGAAGCCTCCC
TTGTAGAGGCGCCTTAGGAAGAACAGGGGTGCCGCGGAGCCCTTTGTCGT
AAAAATACACAAAAAAAGGGCCACTAGCAACACTGGGACGGGAGGGGCAG
GGAGCGCTCTGATGCTGGCACCCCAAACTTGACTTTGGATCACCCTGACC
TGCAGTGTGTACTCAAATGGTGTGCGATCTTTATTTGGATGAGTACAAAC
GACCTCGCCCACAACGAGCAGCTGCGCCCGAGTGGAATACGGTATGTCGT
GGATAACCTCGCATTTTCGCTTTGTGCGGAGGAGTCCTGAGTCCGATTCT
TGACATGATCTCTTTTTTGTTTTTTTTTATTGAACGAGAGCAAGTACAAC
TTCAACCATTGGTTGACGAGAACCGAAGAGAGATGGGAAGATCATTTTTA
AAGAAATTCTGAACGCGCCTAGACCTTCTGAGCATCCCCCAGTCAGGGGG
GGAAATGTGAAATTGTCTAGGTGGGGTCATGGGCTGCAAAAACAAAGCCT
CTTCATGGCATTTAAACGGGTTCCCCGGTGGTAGTAACATTGGGTCAACA
GTATAATGTCGGGGAGAAGCCCACCGTTATACTGTACACTTACATTAATC
GCCATGCAGGGACACCAAAAAAACTTGAACAAAAACATTGTAGTACATAC
CACAACCAAAACCATCCAAAAACAATGTAGTACTGTACGTAATTAGATAG
CCTTTGTTGCCACAGGCAGGAGGGCAGCGCTGTAATGGGTGGGATTGGTA
ACCCTAGCACGTTGAGGTCCATCGGCCGTTCGTGAGGCACGGGTACTCGT
ACATTAACCGTGTTGTCTCGTACCGAAGGGCCTTACTGAATGCTATTGCC
CACCACCCGTGTGTGCTTGCAGGGGTTAACGGCGCCTGGTGCTATTGCTT
GTGCTCAGCTCGGAGCTTTTGCCGCACAGCAACTCATAGACCCCACGAGC
GGCGGCCCCCCACAGCAGGTAGACTTTTTTTCGCGCTGATGACAGGGCCG
TGTCCTGTTGTGTTGCTCCAGCAACAAAGTCCCGAAAGCCCGCTTATTTT
TATTTTTATTTTGGAGAGGGGAAAGGGTGGGAAAGTGGGGAGTGGGTCGC
CTTCGTACAAGAGGCTGTAGTGTAGTAGTTATGTGTTTCAATGCCAGACT
CCACTCATCATTATTTGTTTTGTTTGTCTACTACGACTGCTCCTCAGCCC
CTGCTCCTCCCCACCCCCCTGTGTGGTTACAGGGAATGCTGTCGCCTGTT
GCTGGAGCTCTCGTGGACGGGCCTGAATTAGAAGCGGAATCCGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig785:219427..221121-

>mRNA_F-serratus_M_contig785.19103.1 ID=mRNA_F-serratus_M_contig785.19103.1|Name=mRNA_F-serratus_M_contig785.19103.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig785:219427..221121- (Fucus serratus male)
TCACGAACAGCAGGAGGAGCAGACCCTCCACAGCAGCGCCACGAGGCCAC
AGCGGGAACAGCACCATACAAGGCCACGAGATTCGGGCTGACCGTTGCTA
TCATGGATATTGAACAGTCACGAACAGCAGGAGGAGCAGACCCTCCACAG
CAGCGCCACGAGGCCACAGCGGGAACAGCACCATACAAGGCCACGAGATT
CGGGCTGACCGTTGCTATCATGGATATTGAACAGGGGTTAACGGCGCCTG
GTGCTATTGCTTGTGCTCAGCTCGGAGCTTTTGCCGCACAGCAACTCATA
GACCCCACGAGCGGCGGCCCCCCACAGCAGGGGTTAACGGCGCCTGGTGC
TATTGCTTGTGCTCAGCTCGGAGCTTTTGCCGCACAGCAACTCATAGACC
CCACGAGCGGCGGCCCCCCACAGCAGGGAATGCTGTCGCCTGTTGCTGGA
GCTCTCGTGGACGGGCCTGAATTAGAAGCGGAATCCGGCGGAATGCTGTC
GCCTGTTGCTGGAGCTCTCGTGGACGGGCCTGAATTAGAAGCGGAATCCG
GC
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