prot_F-serratus_M_contig784.19085.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig784.19085.1
Unique Nameprot_F-serratus_M_contig784.19085.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length226
Homology
BLAST of mRNA_F-serratus_M_contig784.19085.1 vs. uniprot
Match: D8LF99_ECTSI (Protein for assembly of pre-ribosomal particles containing 18S rRNA n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF99_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 4.630e-71
Identity = 116/185 (62.70%), Postives = 136/185 (73.51%), Query Frame = 0
Query:   12 ENATIYVKGLPWDTPDEEVKNFFKACGKIESIEQAKGSGSHSLGTALVTFDNITAALKAIEMDGHVLGGRWLNITMPIQKP----------KPDGCTIVFIGNLSWSIDECTVRQIFRECGDIKSVRFGKNRKTGEFRGFGHVEFYGASSADAAVELAGLNVMGRAIRVRHAGPRPPREDSSRGG 186
            EN+ IY++GLPWDT D++VK+FFKACGKI ++EQ K     S GTA VTFD+  AA KAIE+DG  LGGRWL I M  +KP          KP GCT VFIGNLSWSIDE T+RQ F ECGDIKSVRF ++R+TGEFRGFGHVEFY     DAA++LA  +VMGR IRV +A PR PR+DS  GG
Sbjct:  280 ENSKIYLRGLPWDTSDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAAAKAIELDGQELGGRWLKIMMSFEKPDHARNGEPKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGG 464          
BLAST of mRNA_F-serratus_M_contig784.19085.1 vs. uniprot
Match: A0A7S2V571_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V571_9STRA)

HSP 1 Score: 178 bits (452), Expect = 6.930e-50
Identity = 84/168 (50.00%), Postives = 118/168 (70.24%), Query Frame = 0
Query:   16 IYVKGLPWDTPDEEVKNFFKACGKIESIEQAKGSGSHSLGTALVTFDNITAALKAIEMDGHVLGGRWLNITM-----PIQKP--KPDGCTIVFIGNLSWSIDECTVRQIFRECGDIKSVRFGKNRKTGEFRGFGHVEFYGASSADAAVELAGLNVMGRAIRVRHAGPR 176
            +++KGLPW+T + ++K+FFK  G IESI+Q       + GTA V FD+  +A KA+E+DG  +G RW+ + +     P  KP  KP+GC  VFIGNLSW IDE TVRQ F +CGDIKSVRF ++R+TG FRGFG+V+FY   + D A++L G ++MGR +R+ ++ PR
Sbjct:  313 VFMKGLPWETEEYQIKDFFKGIGTIESIDQPLNKDGRASGTAYVVFDSTESAEKALELDGGTVGERWVKLILARDIPPPPKPGEKPEGCDTVFIGNLSWDIDEDTVRQTFGDCGDIKSVRFAEDRETGRFRGFGYVQFYDGDATDEAMKLNGSDLMGREVRIDYSAPR 480          
BLAST of mRNA_F-serratus_M_contig784.19085.1 vs. uniprot
Match: A0A7S2RIH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIH6_9STRA)

HSP 1 Score: 173 bits (439), Expect = 7.240e-49
Identity = 79/167 (47.31%), Postives = 114/167 (68.26%), Query Frame = 0
Query:   16 IYVKGLPWDTPDEEVKNFFKACGKIESIEQAKGSGSHSLGTALVTFDNITAALKAIEMDGHVLGGRWLNITMPIQKP---------KPDGCTIVFIGNLSWSIDECTVRQIFRECGDIKSVRFGKNRKTGEFRGFGHVEFYGASSADAAVELAGLNVMGRAIRVRHA 173
            I+++GLPW   ++E++  F  CG+I+ +EQ   S   S GTAL+ F + ++A  A+EM+G   GGRWL+I +   KP         KP+GC  +FIGNLSW IDE +VR+ F+ECG+I +VRF ++++TG+FRGFGHVEF    S   AV +AG ++MGRA+RV +A
Sbjct:  206 IFIRGLPWRASEDEIREHFGGCGEIKEVEQPMNSDGRSSGTALIVFGSASSAESAVEMNGGDFGGRWLDIKLADDKPIQTERAPSEKPEGCLTIFIGNLSWQIDEDSVREAFQECGEITTVRFAEDKETGDFRGFGHVEFANTDSTTQAVAMAGTDIMGRAVRVDYA 372          
BLAST of mRNA_F-serratus_M_contig784.19085.1 vs. uniprot
Match: A0A835ZAT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAT4_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.250e-48
Identity = 87/183 (47.54%), Postives = 111/183 (60.66%), Query Frame = 0
Query:   16 IYVKGLPWDTPDEEVKNFFKACGKIESIEQAKGSGSHSLGTALVTFDNITAALKAIEMDGHVLGGRWLNITM------------PIQKPKPDGCTIVFIGNLSWSIDECTVRQIFRECGDIKSVRFGKNRKTGEFRGFGHVEFYGASSADAAVELAGLNVMGRAIRVRHAGPRPPREDSSRGG 186
            IYV+GLPW   +EEV++FFK CG+IES +        + GTA V F +  AA K+ E        RWL I +            P +K KP+GCT VFIGNLSW +DE  VR  F ECG+I SVRF  +R+TG+F+GFGHVEF      DAA+++AG  + GR +RV +A PR PRE    GG
Sbjct:  102 IYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRESFGGGG 276          
BLAST of mRNA_F-serratus_M_contig784.19085.1 vs. uniprot
Match: A0A7S2PQL4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PQL4_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.010e-46
Identity = 78/171 (45.61%), Postives = 112/171 (65.50%), Query Frame = 0
Query:    8 ANARENATIYVKGLPWDTPDEEVKNFFKACGK-IESIEQAKGSGSHSLGTALVTFDNITAALKAIEMDGHVLGGRWLNITMPIQKPKPDGCTIVFIGNLSWSIDECTVRQIFRECGDIKSVRFGKNRKTGEFRGFGHVEFYGASSADAAVELAGLNVMGRAIRVRHAGPRP 177
            +N  E  T++V+GLPW   +EEV++FFK CG   +SI+        S GTA++ F        A+E+D    G RWL+I       KP+GCT VF+GNLS+ +DE +VR+ F +CG+IK +RF  +R+TGEF+GFGHVEFY + SA+ AV+L G  +M RA+R+ +A  +P
Sbjct:  175 SNGDEGTTVFVRGLPWKATEEEVRDFFKDCGNGCKSIDMPLDHSGRSSGTAIIDFGTAEGTAAALELDQATFGERWLSIKPSSVSAKPEGCTTVFVGNLSFQVDEDSVREFFGQCGEIKDIRFSMDRETGEFKGFGHVEFYDSDSAENAVKLVGQVLMDRALRIDYARSKP 345          
BLAST of mRNA_F-serratus_M_contig784.19085.1 vs. uniprot
Match: A0A0W8CI28_PHYNI (28 kDa ribonucleoprotein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CI28_PHYNI)

HSP 1 Score: 165 bits (418), Expect = 7.340e-46
Identity = 87/183 (47.54%), Postives = 111/183 (60.66%), Query Frame = 0
Query:    8 ANARENATIYVKGLPWDTPDEEVKNFFKACGKIESIEQAKGSGSHSLGTALVTFDNITAALKAIEMDGHVLGGRWLNITMPIQK----PKPDGCTIVFIGNLSWSIDECTVRQIFRECGDIKSVRFGKNRKTGEFRGFGHVEFYGASSADAAVELAGLNVMGRAIRVRHAGPRPPREDSSRGG 186
            AN ++   I++ GLPW   ++EVK  F  CG++ +      +G  S GTA VTF    AA  A+ MDG   GGRW+ I    +K     KPDGCT +FIGNL+W +DE TVR+ F ECG+I S R   +R+TGEFRGFGHV+F    + D AV+LAG  V GRAIRV +A  R       RGG
Sbjct:  125 ANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSS-GTAFVTFATPEAAEAALAMDGQDFGGRWMKIRTAEKKNMFDEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSRDNNGGGGRGG 306          
BLAST of mRNA_F-serratus_M_contig784.19085.1 vs. uniprot
Match: W2QYS3_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2QYS3_PHYPN)

HSP 1 Score: 165 bits (418), Expect = 2.580e-45
Identity = 87/183 (47.54%), Postives = 111/183 (60.66%), Query Frame = 0
Query:    8 ANARENATIYVKGLPWDTPDEEVKNFFKACGKIESIEQAKGSGSHSLGTALVTFDNITAALKAIEMDGHVLGGRWLNITMPIQK----PKPDGCTIVFIGNLSWSIDECTVRQIFRECGDIKSVRFGKNRKTGEFRGFGHVEFYGASSADAAVELAGLNVMGRAIRVRHAGPRPPREDSSRGG 186
            AN ++   I++ GLPW   ++EVK  F  CG++ +      +G  S GTA VTF    AA  A+ MDG   GGRW+ I    +K     KPDGCT +FIGNL+W +DE TVR+ F ECG+I S R   +R+TGEFRGFGHV+F    + D AV+LAG  V GRAIRV +A  R       RGG
Sbjct:  184 ANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSS-GTAFVTFATPEAAEAALAMDGQDFGGRWMKIRTAEKKNMFDEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSRDNNGGGGRGG 365          
BLAST of mRNA_F-serratus_M_contig784.19085.1 vs. uniprot
Match: A0A7S3Q248_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q248_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.840e-45
Identity = 76/167 (45.51%), Postives = 108/167 (64.67%), Query Frame = 0
Query:   16 IYVKGLPWDTPDEEVKNFFKACGKIESIEQAKGSGSHSLGTALVTFDNITAALKAIEMDGHVLGGRWLNITMPIQKP---------KPDGCTIVFIGNLSWSIDECTVRQIFRECGDIKSVRFGKNRKTGEFRGFGHVEFYGASSADAAVELAGLNVMGRAIRVRHA 173
            +Y++GLPW   D+E++ +F +CG+I S E    S   S GTA + F    A  K + ++G   GGRWL+I     KP         KP  C  VF GNLSW++DE T+R+ F ECG+I S+RF  +R+TGEF+GFGH+EF+ + S DAA+ +AG ++MGRA+RV +A
Sbjct:  208 MYIRGLPWRATDDELREYFASCGEIVSCELPLQSDGRSSGTAEIEFSTKDACEKCMALNGEDFGGRWLSIKYASDKPAFAARETSEKPPDCKTVFCGNLSWNVDEDTLRETFAECGEISSIRFATDRETGEFKGFGHIEFFSSDSTDAAIAMAGTDIMGRAVRVDYA 374          
BLAST of mRNA_F-serratus_M_contig784.19085.1 vs. uniprot
Match: A0A329SMV5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SMV5_9STRA)

HSP 1 Score: 166 bits (419), Expect = 5.950e-45
Identity = 85/170 (50.00%), Postives = 108/170 (63.53%), Query Frame = 0
Query:    8 ANARENATIYVKGLPWDTPDEEVKNFFKACGKIESIEQAKGSGSHSLGTALVTFDNITAALKAIEMDGHVLGGRWLNITMPIQK----PKPDGCTIVFIGNLSWSIDECTVRQIFRECGDIKSVRFGKNRKTGEFRGFGHVEFYGASSADAAVELAGLNVMGRAIRVRHA 173
            AN ++N  I++ GLPW   +EEVK  F  CG++ +      +G  S GTA VTF    AA  A+ MDG   GGRW+ I    +K     KP+GCT VFIGNLSW +DE T+R+ F ECG+I S R   +R+TGEFRGFGHV+F    + D AV+LAG  V GRAIRV +A
Sbjct:  247 ANPQKNLEIFIAGLPWSATEEEVKEHFAGCGEVTAARIPLQNGRSS-GTAFVTFATPEAAEAALAMDGQDFGGRWMKIRTAEKKNMFDEKPEGCTSVFIGNLSWDVDENTIRETFGECGEILSCRLATDRETGEFRGFGHVDFASTEAVDEAVKLAGSYVNGRAIRVNYA 415          
BLAST of mRNA_F-serratus_M_contig784.19085.1 vs. uniprot
Match: A0A1Z5KL43_FISSO (Nucleolin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL43_FISSO)

HSP 1 Score: 165 bits (418), Expect = 1.010e-44
Identity = 79/173 (45.66%), Postives = 107/173 (61.85%), Query Frame = 0
Query:   10 ARENATIYVKGLPWDTPDEEVKNFFKACGKIESIEQAKGSGSHSLGTALVTFDNITAALKAIEMDGHVLGGRWLNITMPIQKP---------KPDGCTIVFIGNLSWSIDECTVRQIFRECGDIKSVRFGKNRKTGEFRGFGHVEFYGASSADAAVELAGLNVMGRAIRVRHA 173
            A E   +YV+GLPW   + EV+ FF ACG I+S E        S GTA++ F+    A  AIE++G    GRWL+I     KP         K DGC  VF+GNL+W +DE T+RQ F ECG+I SVRF  +R+TGEF+GFGH+EF    + D A+ +AG +++GR +RV +A
Sbjct:  271 ATEGNKVYVRGLPWKAEEHEVQEFFAACGPIKSCEMPLMDDGRSSGTAIIEFETNEGAAAAIELNGGDFQGRWLSIKYSTPKPILSAREPTQKQDGCVTVFVGNLAWDVDEDTLRQAFGECGEITSVRFATDRETGEFKGFGHIEFTDTEATDKAIAMAGTDILGRQVRVDYA 443          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig784.19085.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF99_ECTSI4.630e-7162.70Protein for assembly of pre-ribosomal particles co... [more]
A0A7S2V571_9STRA6.930e-5050.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2RIH6_9STRA7.240e-4947.31Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A835ZAT4_9STRA4.250e-4847.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2PQL4_9STRA3.010e-4645.61Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A0W8CI28_PHYNI7.340e-4647.5428 kDa ribonucleoprotein n=9 Tax=Phytophthora TaxI... [more]
W2QYS3_PHYPN2.580e-4547.54Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A7S3Q248_9STRA3.840e-4545.51Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A329SMV5_9STRA5.950e-4550.00Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A1Z5KL43_FISSO1.010e-4445.66Nucleolin n=2 Tax=Fistulifera solaris TaxID=151956... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 15..86
e-value: 8.9E-17
score: 71.7
coord: 99..171
e-value: 4.8E-18
score: 75.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 16..81
e-value: 6.2E-14
score: 51.6
coord: 100..169
e-value: 1.3E-14
score: 53.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 14..90
score: 14.027
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 98..175
score: 15.886
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..91
e-value: 7.8E-19
score: 70.2
coord: 92..185
e-value: 4.7E-24
score: 87.1
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 92..215
coord: 14..87
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..92
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 88..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig784contigF-serratus_M_contig784:32514..86048 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig784.19085.1mRNA_F-serratus_M_contig784.19085.1Fucus serratus malemRNAF-serratus_M_contig784 32141..86048 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig784.19085.1 ID=prot_F-serratus_M_contig784.19085.1|Name=mRNA_F-serratus_M_contig784.19085.1|organism=Fucus serratus male|type=polypeptide|length=226bp
MMLVENKANARENATIYVKGLPWDTPDEEVKNFFKACGKIESIEQAKGSG
SHSLGTALVTFDNITAALKAIEMDGHVLGGRWLNITMPIQKPKPDGCTIV
FIGNLSWSIDECTVRQIFRECGDIKSVRFGKNRKTGEFRGFGHVEFYGAS
SADAAVELAGLNVMGRAIRVRHAGPRPPREDSSRGGRERGRSGGATGRVG
GGRGGGRGRSEECKGKKGGEREDEGG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf