mRNA_F-serratus_M_contig784.19083.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig784.19083.1
Unique NamemRNA_F-serratus_M_contig784.19083.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig784.19083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig784contigF-serratus_M_contig784:25032..30034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size383
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932329.1647398-CDS-F-serratus_M_contig784:25031..251391622932329.1647398-CDS-F-serratus_M_contig784:25031..25139Fucus serratus maleCDSF-serratus_M_contig784 25032..25139 +
1690964255.9062953-CDS-F-serratus_M_contig784:25031..251391690964255.9062953-CDS-F-serratus_M_contig784:25031..25139Fucus serratus maleCDSF-serratus_M_contig784 25032..25139 +
1622932329.187485-CDS-F-serratus_M_contig784:29760..300331622932329.187485-CDS-F-serratus_M_contig784:29760..30033Fucus serratus maleCDSF-serratus_M_contig784 29761..30033 +
1690964255.9216106-CDS-F-serratus_M_contig784:29760..300331690964255.9216106-CDS-F-serratus_M_contig784:29760..30033Fucus serratus maleCDSF-serratus_M_contig784 29761..30033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig784.19083.1prot_F-serratus_M_contig784.19083.1Fucus serratus malepolypeptideF-serratus_M_contig784 25032..30033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig784.19083.1

>prot_F-serratus_M_contig784.19083.1 ID=prot_F-serratus_M_contig784.19083.1|Name=mRNA_F-serratus_M_contig784.19083.1|organism=Fucus serratus male|type=polypeptide|length=127bp
GTLDSVEQKNYAVGEQREGYEMLVSFGGQRIASPSAEVTFDLPSVSSGGE
EEPGMANVENNSVSEGKLHGKNTPEAPTLENGQTVFPGKGLWEAREAAFR
SDEEKETMDGEARRLQGEFAEVEAGLK
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mRNA from alignment at F-serratus_M_contig784:25032..30034+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig784.19083.1 ID=mRNA_F-serratus_M_contig784.19083.1|Name=mRNA_F-serratus_M_contig784.19083.1|organism=Fucus serratus male|type=mRNA|length=5003bp|location=Sequence derived from alignment at F-serratus_M_contig784:25032..30034+ (Fucus serratus male)
GGCACGCTAGACAGCGTGGAACAGAAGAACTACGCAGTAGGTGAACAGAG
AGAGGGATACGAAATGTTGGTCAGCTTTGGAGGCCAACGAATTGCTTCGC
CATCGGCGGTGAGTCCTGTTGGGTCAATGCCGAGTTACATTGCACCTGGA
AACGGTATTCCACTAGGTTACGTATGACTCGTGATGCCTCCGGCGGTCGT
GTGGACGTGAAATATCCCAGGTGACCGAGCACAGCGCACTTTCTTGTTGA
TATTTGATCGATACGGTCCGCTAGGGTCCTTCGGGTTTCTCGCGAAGTCG
CGATAAGTCGCGGTGTGGTCACTGGTTAATGGATTTTGCCAGCTGACCCC
ACAAAAACCCCAAAATGTGTACAGGACGCATCTAAAATTAATGTGAAACA
AAAATAAAAAATAAAAATCGTTATTCAGAAGCCAATACAAATGTTGTGCA
ATACCGGCAGAGTATGGACGACCGGCAGAATGGTGTACTCAAAATGTGTA
CCGGACGCATCTAAAATTGATGTGAAACAAAAATAACAAAATCGTTGTTC
AGAAGCCAGCACAAATGTTGTGTTTACTACTGTATATAATACGGCAACGG
TTATTATGCCCCCAGTCAGGGGAAACGATGTCAAAACGTTTCGGTGGGAT
CATAGGCTGCAAACACACAACCTCTTCATGGCGTTTAATCGGGTTCCCCA
ATGGTGGTGGCATTGGGTCAACAGTATCATGTCAGGGAGAAAGCCCACCG
TTATTATGTACACTTAGGGCCGTTTTAAACGAAGCGTTTTTTCTGGCTTT
TTGTGGGATCCCAGAAATTTTTCTGGCTTTTGCACCAAGGGATCCCAGAA
AAGGAGCAAGGCCAAAAAATTCACCCCTGCTCCTTTTCTGGCTTTTTTTC
TGGCTTTTGGGATTTCTGGCTTTTTTACAGTGCACCAGCCACAACATCGG
GCACAGAGTCCCGAACACCCCAGTATCACCCAGCTGTGGCTTGAAGTCAC
AGGAGATTGCCAACAGGCTCGTGTAAGGTCTATGACTGACCGTGGGAAGC
GCCGTGAACGTCCTGGACTCTCCAGCTTGCGTTCCCAGAGACGTAGACTT
CGACATCACGACCAGACAGATGAGAGCAGGTCGCCGGCAGGAACACTGAT
AGCCGCCATCAAGGCCGTCCTCGTCGTGGTTGGGGTTCTCGGCGCCGAGG
GAGCTGCGAACAAACTCTACTGCTGTGTCCAACATTGTGCTTCCTCTGAA
CATTCCTTGCTGTGTGCGCTGCTGCAGTGTTCAGGCACGGCCAAGCGACG
CTCACCATGTAGTAGTAGTGCTGTCTACTGCTGTATGATATGTAGACTAC
GGTTTTTTTTTTCGTCGGAGGATTTTTATACTACTGTACGTATAGATATT
CAAAATATGTGAGCTCTAGTATGGACCTAGGCTCATCCACACTAGTTTGA
ATTTAGTACTGAGATCAGTGAGGGTACTGCTCTATCTACTATCCTACGCT
GTCATACTTGTACTATGTACAGTACGAAGACTTCGGAGTAGTTGTACAGC
GTGGTGCACGTGTGTGTGTTGTCTTCGCATTACACCGCTACAGCAGTGTA
CGGTGCTCGCAGCAGAGATAAAAAACAAAACAAGATGAGTTCGCATCGCA
TCGCATCGTCGTGTATTCGAAATACTACTCGTAGCATTATCACATAGAAT
AATTCGATATCACAGCAGAAGCAGCAGTGCTCTAGGGTACAGCAGTACTG
AGCCAAGCCCTTCTTGTGTCGATATCGATTTGCAGAGAAAGATAGGAAGG
TGTTGAGGCCGGTGGTGGCGACTGATGTGGCTAATTGTTGTAATCCGAGT
GTAATCCGTATGATAGACACGTTTCCCGCCGCACAGCTCCTGTGCGCTAC
TCTGTGCCGTCGGGATAGATACATCTGCTGCGTTGCCCAATGCGACCACC
GTGCGGCTCAACGTAGGACCAGAGCTAGAGCCACGGGTACGAGGGGTTGT
AGATGAAGACACTCCATGTCCACCACCAGCACCAAGTTTCCCGGTACTCT
CATACCTCCGTGGGGTACAAACAGTCCTTCTAGGCCTCATTTCGTTCGTC
GGTTCGCTGTTGTTGCCCTCCATGGTGTCCTTGTGTCACGGGTGTACGGC
CTTTGGGGTGGTCGGGACAGGGTTGCCCGCCATAAATGACAGGTTTTTCT
AATTTGTTCAAACGTTCTGTTTAGAACGCCTGCTTTTTTTTTTCTGGGAT
CTGGGATTCCAAACCCCAAAAACCAAAAATCTGACCGCTCCGTTTAAAAC
GGCCCTTACATTAATCGCCATGCAGGAACACCAAACTAAACAAAGACAAA
ATACACAATCAGCCTAGATTACAATTTGTTACATTGGACGAATAAAGACA
CAGCGAGAAGCATCGCAAGGGGTTAGCTGCCTGAAATTGAACAGGAGCAG
GACCCATACCGGACTCACCTATCGTATATGGCAGGAAGAATACAAATACA
AGCCACAGCAAAAAGGCAAAACAAAACAGAATCGCGCACGTAAATACGGT
TCAAATCCACTAGCCTCGCGCTGGTGCCGCACGTTGGATTGACGGAAGTT
CGTGCGTCGCCAGGCATAATCGAGTGTTTCCGCTCCCCTCTCGACCCCCC
GGTGCCACATGCGCATATTCTACGCAGCAGTCATCCAATTCCATACATCC
TTGACAACAATTCCTTTGCCTTTGCGCGGGATCGCCCCGAAGGCCTAGAG
ATTTTTCTGGGGGATGTCTCCCCAAGACGCCGCCGGTCGACCTCCTCGCT
TGGGCCCTTGCACCGCCAGCCGCCCAGACATGATTCACTTTGAGAGCCTT
GGATCGTCTTGCCGAACAAGGGCCCCGGCGAAAACCAAGTTGACGCTTCC
GGATTGTCGTTTCGATGCGTTCGGAACCGATCCTCTTGAAAACCTCTGTA
TCCGATAGAGATTTGTACTCGGTGCGATCCTTGCGCCGAAAGTCGTTGAC
GTACAGAAGTAGCTTGTGGTGGGCGGTACGCAGGCTGCCAAAGTCCTGAG
TGCGCATAGCCCAAGTAGCACATCCGTATAGCATAACTTCCACAACCTCC
GCTTTGAATAGCTAATCTTGAGCGACAACCGGGAGTTCCGTCGGTCGTAC
AATTGGGAACTGTATCTTCTGACGCTCATCCAAGCGGCACCGATGCGACG
CTTAGTCTCGGTCTCGAGGTCCGCGCTCTCGCTGATAGCACCACCAAGGT
ACACAAACTCGGTTGTCTGTTTATACCGTTGGCCTGCCGTCTCAATTTGC
AGCACGTTCGACGCTTTGGCCGGGATCGAACTACAGGTACATGGCCTCGG
TCTTCTTCTCCAACACTGTTAATCCGAATTCCTGACAGGCGGCAACTGGG
ACGTCCATAATTTTGGCAAGGCCACGCAGCGATGTCTACACCACCCCCGC
ATCGTCTGCATACAGCATCCCCCACACCGCTCGTCGAACCATTTCTAATG
TCCCCTTCTCCCCGGGCCTGCCATCCTCGCCCTTTTGCGCATCATCGAGG
TACACCAAGTCCGAGACGATCACCGAGTCCGCCACGAACCGCTGCAGAAC
CACTATAATGACCGCCGCAAAAAAGTTGTTGAACAATAGCGGCGACATCA
CACATCCTTGCTGGAGGCCCTGTCAGGCATTGAACCACGCCGAGAAGTCT
TCATCCAGCTGTACGCGAGCCCGCATACCATCGTGGAACATGCGGATGAC
TTTGATCATCCGAGGCGGAACTCCAAAACAGGCAAGTATTTTCGCAGTAG
CACACGATCGACAGAATCGTATGCTTTTGCCAGATCGATGGAGAAAATCT
CTAGTAAAATGTTGTCGGTCCGTCCTAGTTCCTGCAGTCCCCGCACGGCC
AACATCATATTGGTTGTCTAGCGCTGGGGCCGGAAGCCGCACTGTTTGTC
TCTCGGGGAGAATCCCAACTTCCTCACAGAAGTCGTCAAGTCGATTGGCC
ACGATTTTGAGGCGAACTTTACCAGCATGTGCCGCCAGAGCGAGGCCCCT
GGAGTTGCCACACTCGGTTCGATCCTTTTTCTTGTGTGGAACTTTGATGG
TGACGTCTTTCCACTTCTGGGGTACCTCCCCCGTCATCCACACAGCGACG
ATGTTGCCTTGGAGTTCGAGCAATATTTCGTGGGAGCAGTCGAAAAGCCC
AAACTTGAGCAGTTCCGCCGGCAGCTCATCCGGTTCCATAGCCTTGCCAT
TGGCCACAGATCTCAGCGCCCGTTTCGTCTCGTCCACAACCGGCGGGCTC
CGAGTGACACGGCTACCGACTTGGGCGATAGACCCTCGATGGTTGTTCGA
TCGAGAGTGGCCGATGCCATATCGAGCAAAGAAGTCAAATATCGCCTCCA
CATCTCTTGGATCTCTTCGAGCTTTCGTAGGAGCTTTCCGTTCTCGTCCC
TGATATGCTACGCGCTTCCCACATTCTTGCCCTACAGCCTCCACCCGCTT
GTATTCTCGATAGTCCATAAAATGTCCTCCTAGTGTTTGCTCCCGTTGGG
TCTTTTCCATTCGACCAATCGAATATTGTCATTCGAGTGCTTTACCACTT
GACCTAAAAAAAGTATAGCAAGGCATGTAAGGCCGACCTACTCGGGCGGA
AAGAGAATATGCCGTTCTTGTCTTGAAACATTGCCCCACCCCCCCCCCTT
CCCTTCCCGTACACCCATTTCACCCACAGGAAGTTACTTTTGATCTTCCG
AGCGTATCAAGCGGAGGTGAGGAGGAGCCTGGGATGGCGAACGTTGAAAA
CAATAGCGTCTCTGAAGGCAAGCTCCACGGCAAGAACACCCCCGAGGCGC
CCACGCTGGAAAATGGGCAAACTGTCTTTCCAGGGAAAGGGCTGTGGGAG
GCTCGAGAAGCCGCCTTTCGTTCGGATGAGGAGAAGGAGACGATGGACGG
CGAGGCCCGGAGGTTGCAGGGAGAGTTCGCCGAAGTAGAAGCCGGCTTAA
AGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig784:25032..30034+

>mRNA_F-serratus_M_contig784.19083.1 ID=mRNA_F-serratus_M_contig784.19083.1|Name=mRNA_F-serratus_M_contig784.19083.1|organism=Fucus serratus male|type=CDS|length=762bp|location=Sequence derived from alignment at F-serratus_M_contig784:25032..30034+ (Fucus serratus male)
GGCACGCTAGACAGCGTGGAACAGAAGAACTACGCAGTAGGTGAACAGAG
AGAGGGATACGAAATGTTGGTCAGCTTTGGAGGCCAACGAATTGCTTCGC
CATCGGCGGGCACGCTAGACAGCGTGGAACAGAAGAACTACGCAGTAGGT
GAACAGAGAGAGGGATACGAAATGTTGGTCAGCTTTGGAGGCCAACGAAT
TGCTTCGCCATCGGCGGAAGTTACTTTTGATCTTCCGAGCGTATCAAGCG
GAGGTGAGGAGGAGCCTGGGATGGCGAACGTTGAAAACAATAGCGTCTCT
GAAGGCAAGCTCCACGGCAAGAACACCCCCGAGGCGCCCACGCTGGAAAA
TGGGCAAACTGTCTTTCCAGGGAAAGGGCTGTGGGAGGCTCGAGAAGCCG
CCTTTCGTTCGGATGAGGAGAAGGAGACGATGGACGGCGAGGCCCGGAGG
TTGCAGGGAGAGTTCGCCGAAGTAGAAGCCGGCTTAAAGGAAGTTACTTT
TGATCTTCCGAGCGTATCAAGCGGAGGTGAGGAGGAGCCTGGGATGGCGA
ACGTTGAAAACAATAGCGTCTCTGAAGGCAAGCTCCACGGCAAGAACACC
CCCGAGGCGCCCACGCTGGAAAATGGGCAAACTGTCTTTCCAGGGAAAGG
GCTGTGGGAGGCTCGAGAAGCCGCCTTTCGTTCGGATGAGGAGAAGGAGA
CGATGGACGGCGAGGCCCGGAGGTTGCAGGGAGAGTTCGCCGAAGTAGAA
GCCGGCTTAAAG
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