mRNA_F-serratus_M_contig7833.19079.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7833.19079.1
Unique NamemRNA_F-serratus_M_contig7833.19079.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig7833.19079.1 vs. uniprot
Match: A0A6H5L144_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L144_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.670e-11
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:    1 RTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRG-PGEEEKEWTDCVADDRRLFGVT-----GDWRTAALDPGAWYNTVHEGGCRFMAAWVRE 264
            R RRL +AG ++RMGD+RLPKR++ G +  AG  G  G +E +W   + +D   FG+      G W+ +A D  AWY+ + +G   FM  W R+
Sbjct:  792 RKRRLCFAGFVMRMGDNRLPKRMLLGAM--AGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQ 883
[Close]
BLAST of mRNA_F-serratus_M_contig7833.19079.1 vs. uniprot
Match: A0A6H5JFE2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.090e-8
Identity = 34/67 (50.75%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:    1 RTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGEEEKEWTDCVADDRRLFGVTGDWRTAALDP 201
            R RRLL+AGAL R  D RLPKR+M GEL    KR  G +E+ W  CV DD + FG   D  +   DP
Sbjct:  326 RQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA--DHGSTKTDP 390
[Close]
BLAST of mRNA_F-serratus_M_contig7833.19079.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.300e-8
Identity = 31/56 (55.36%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 RTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGEEEKEWTDCVADDRRLFGV 168
            R RRLL+AGAL R  D RLPKR+M GEL    KR  G +E+ W  CV DD + FG 
Sbjct:  196 RQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA 251
[Close]
BLAST of mRNA_F-serratus_M_contig7833.19079.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.500e-8
Identity = 34/67 (50.75%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:    1 RTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGEEEKEWTDCVADDRRLFGVTGDWRTAALDP 201
            R RRLL+AGAL R  D RLPKR+M GEL    KR  G +E+ W  CV DD + FG   D  +   DP
Sbjct:  220 RQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA--DHGSTNTDP 284
[Close]
BLAST of mRNA_F-serratus_M_contig7833.19079.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.060e-8
Identity = 31/56 (55.36%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 RTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGEEEKEWTDCVADDRRLFGV 168
            R RRLL+AGAL R  D RLPKR+M GEL    KR  G +E+ W  CV DD + FG 
Sbjct:  459 RQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGA 514
[Close]
BLAST of mRNA_F-serratus_M_contig7833.19079.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.100e-8
Identity = 34/67 (50.75%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    1 RTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGEEEKEWTDCVADDRRLFGVTGDWRTAALDP 201
            R RRLL+AGAL R  D RLPKR+M GEL    KR  G +E+ W  CV DD   FG   D  +   DP
Sbjct:  548 RQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGA--DHGSTKTDP 612
[Close]
BLAST of mRNA_F-serratus_M_contig7833.19079.1 vs. uniprot
Match: A0A6H5L5Z0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z0_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.330e-7
Identity = 33/67 (49.25%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    1 RTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGEEEKEWTDCVADDRRLFGVTGDWRTAALDP 201
            R RRLL+AGAL R  D RLPKR+M GEL    K   G +E+ W  CV DD + FG   D  +   DP
Sbjct:  336 RQRRLLFAGALARKPDGRLPKRLMLGELARGEKGRMGGQEQNWPKCVLDDLKAFGA--DHGSTKTDP 400
[Close]
BLAST of mRNA_F-serratus_M_contig7833.19079.1 vs. uniprot
Match: A0A6H5JTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ8_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.100e-7
Identity = 31/67 (46.27%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    1 RTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGEEEKEWTDCVADDRRLFGVTGDWRTAALDP 201
            R RRLL+AGA+ R  D RLPKR++ GEL    KR    +E+ W  CV DD + FG   D  +   DP
Sbjct:  177 RQRRLLFAGAMARQPDGRLPKRLVLGELAGGEKRRSAGQEQNWPKCVLDDLKAFGA--DHGSTKTDP 241
[Close]
BLAST of mRNA_F-serratus_M_contig7833.19079.1 vs. uniprot
Match: A0A6H5L1F1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.470e-7
Identity = 32/75 (42.67%), Postives = 39/75 (52.00%), Query Frame = 1 
Query:    1 RTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGEEEKEWTDCVADDRRLFGVT-----GDWRTAALDPGAW 210
            R RRLL+AGA+ R  D RLPKR+M G++        G  EK W  C+ DD   FG       GD RT  +  G W
Sbjct:  509 RQRRLLFAGAVARQSDGRLPKRLMLGDIVGGKDPESGRSEKNWVLCLKDDFVEFGANAESTAGDLRTFGIPSGCW 583
[Close]
BLAST of mRNA_F-serratus_M_contig7833.19079.1 vs. uniprot
Match: A0A6H5K2V9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 8.660e-7
Identity = 30/62 (48.39%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:   16 LWAGALLRMGDHRLPKRVMSGELENAGKRGPGEEEKEWTDCVADDRRLFGVTGDWRTAALDP 201
            L+AGAL R  D RLPKR+M GEL    KR  G +E+ W  CV DD + FG   D  +   DP
Sbjct:  287 LFAGALARQPDGRLPKRLMFGELAGGEKRSRGGQEQNWPKCVLDDLKAFGA--DHGSTQTDP 346
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7833.19079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L144_9PHAE5.670e-1139.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFE2_9PHAE1.090e-850.75Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JAH7_9PHAE1.300e-855.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1X4_9PHAE1.500e-850.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLT1_9PHAE2.060e-855.36Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KS82_9PHAE2.100e-850.75Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L5Z0_9PHAE1.330e-749.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTZ8_9PHAE3.100e-746.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1F1_9PHAE3.470e-742.67Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K2V9_9PHAE8.660e-748.39Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7833contigF-serratus_M_contig7833:2712..2981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.8
Seed ortholog evalue3.7e-07
Seed eggNOG ortholog13735.ENSPSIP00000001585
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,49BMJ@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932329.1217673-CDS-F-serratus_M_contig7833:2711..29811622932329.1217673-CDS-F-serratus_M_contig7833:2711..2981Fucus serratus maleCDSF-serratus_M_contig7833 2712..2981 -
1690964255.8929706-CDS-F-serratus_M_contig7833:2711..29811690964255.8929706-CDS-F-serratus_M_contig7833:2711..2981Fucus serratus maleCDSF-serratus_M_contig7833 2712..2981 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7833.19079.1prot_F-serratus_M_contig7833.19079.1Fucus serratus malepolypeptideF-serratus_M_contig7833 2712..2981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7833.19079.1

>prot_F-serratus_M_contig7833.19079.1 ID=prot_F-serratus_M_contig7833.19079.1|Name=mRNA_F-serratus_M_contig7833.19079.1|organism=Fucus serratus male|type=polypeptide|length=90bp
RTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGEEEKEWTDCVADD
RRLFGVTGDWRTAALDPGAWYNTVHEGGCRFMAAWVREF*
back to top

mRNA from alignment at F-serratus_M_contig7833:2712..2981-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7833.19079.1 ID=mRNA_F-serratus_M_contig7833.19079.1|Name=mRNA_F-serratus_M_contig7833.19079.1|organism=Fucus serratus male|type=mRNA|length=270bp|location=Sequence derived from alignment at F-serratus_M_contig7833:2712..2981- (Fucus serratus male)
CGCACGAGAAGATTGTTGTGGGCGGGGGCGCTACTCCGCATGGGCGACCA
CAGGTTACCCAAGAGGGTCATGTCGGGAGAGCTCGAGAATGCGGGGAAAC
GTGGACCGGGGGAGGAGGAGAAAGAGTGGACGGACTGCGTTGCAGATGAT
CGTCGGCTATTTGGCGTCACGGGGGACTGGAGAACCGCCGCACTTGACCC
TGGGGCGTGGTATAACACGGTACACGAAGGGGGTTGTAGGTTTATGGCCG
CATGGGTGAGGGAATTTTAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig7833:2712..2981-

>mRNA_F-serratus_M_contig7833.19079.1 ID=mRNA_F-serratus_M_contig7833.19079.1|Name=mRNA_F-serratus_M_contig7833.19079.1|organism=Fucus serratus male|type=CDS|length=540bp|location=Sequence derived from alignment at F-serratus_M_contig7833:2712..2981- (Fucus serratus male)
CGCACGAGAAGATTGTTGTGGGCGGGGGCGCTACTCCGCATGGGCGACCA
CAGGTTACCCAAGAGGGTCATGTCGGGAGAGCTCGAGAATGCGGGGAAAC
GTGGACCGGGGGAGGAGGAGAAAGAGTGGACGGACTGCGTTGCAGATGAT
CGTCGGCTATTTGGCGTCACGGGGGACTGGAGAACCGCCGCACTTGACCC
TGGGGCGTGGTATAACACGGTACACGAAGGGGGTTGTAGGTTTATGGCCG
CATGGGTGAGGGAATTTTAACGCACGAGAAGATTGTTGTGGGCGGGGGCG
CTACTCCGCATGGGCGACCACAGGTTACCCAAGAGGGTCATGTCGGGAGA
GCTCGAGAATGCGGGGAAACGTGGACCGGGGGAGGAGGAGAAAGAGTGGA
CGGACTGCGTTGCAGATGATCGTCGGCTATTTGGCGTCACGGGGGACTGG
AGAACCGCCGCACTTGACCCTGGGGCGTGGTATAACACGGTACACGAAGG
GGGTTGTAGGTTTATGGCCGCATGGGTGAGGGAATTTTAA
back to top