mRNA_F-serratus_M_contig7832.19078.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7832.19078.1
Unique NamemRNA_F-serratus_M_contig7832.19078.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7832.19078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7832contigF-serratus_M_contig7832:8803..9127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932329.0510232-UTR-F-serratus_M_contig7832:8802..88061622932329.0510232-UTR-F-serratus_M_contig7832:8802..8806Fucus serratus maleUTRF-serratus_M_contig7832 8803..8806 +
1690964255.8679368-UTR-F-serratus_M_contig7832:8802..88061690964255.8679368-UTR-F-serratus_M_contig7832:8802..8806Fucus serratus maleUTRF-serratus_M_contig7832 8803..8806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932329.0686643-CDS-F-serratus_M_contig7832:8806..91271622932329.0686643-CDS-F-serratus_M_contig7832:8806..9127Fucus serratus maleCDSF-serratus_M_contig7832 8807..9127 +
1690964255.8788652-CDS-F-serratus_M_contig7832:8806..91271690964255.8788652-CDS-F-serratus_M_contig7832:8806..9127Fucus serratus maleCDSF-serratus_M_contig7832 8807..9127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7832.19078.1prot_F-serratus_M_contig7832.19078.1Fucus serratus malepolypeptideF-serratus_M_contig7832 8807..9127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7832.19078.1

>prot_F-serratus_M_contig7832.19078.1 ID=prot_F-serratus_M_contig7832.19078.1|Name=mRNA_F-serratus_M_contig7832.19078.1|organism=Fucus serratus male|type=polypeptide|length=107bp
MWCSFHKSTTHSDETCRTLQQQLGNNGSANCANQGSDYPAVLTASDPPPG
CNIEEQGISFAAVEVPNRAEPPKEESFWPFGPTDEAVASFDTSGFFSGFG
GATSDTG
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mRNA from alignment at F-serratus_M_contig7832:8803..9127+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7832.19078.1 ID=mRNA_F-serratus_M_contig7832.19078.1|Name=mRNA_F-serratus_M_contig7832.19078.1|organism=Fucus serratus male|type=mRNA|length=325bp|location=Sequence derived from alignment at F-serratus_M_contig7832:8803..9127+ (Fucus serratus male)
GCCGATGTGGTGCTCGTTCCACAAGTCCACCACGCACAGTGACGAGACAT
GCCGTACGCTACAACAGCAGCTGGGCAACAACGGTAGCGCAAACTGTGCC
AACCAGGGGTCGGACTACCCCGCCGTCCTGACTGCAAGCGATCCTCCTCC
CGGTTGTAATATTGAGGAGCAAGGCATATCGTTCGCTGCAGTAGAAGTGC
CGAACAGGGCCGAACCACCAAAAGAGGAGAGTTTCTGGCCGTTCGGTCCC
ACCGATGAAGCGGTTGCCTCGTTCGACACCAGCGGATTTTTCAGCGGCTT
TGGAGGTGCCACCAGCGACACTGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7832:8803..9127+

>mRNA_F-serratus_M_contig7832.19078.1 ID=mRNA_F-serratus_M_contig7832.19078.1|Name=mRNA_F-serratus_M_contig7832.19078.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig7832:8803..9127+ (Fucus serratus male)
ATGTGGTGCTCGTTCCACAAGTCCACCACGCACAGTGACGAGACATGCCG
TACGCTACAACAGCAGCTGGGCAACAACGGTAGCGCAAACTGTGCCAACC
AGGGGTCGGACTACCCCGCCGTCCTGACTGCAAGCGATCCTCCTCCCGGT
TGTAATATTGAGGAGCAAGGCATATCGTTCGCTGCAGTAGAAGTGCCGAA
CAGGGCCGAACCACCAAAAGAGGAGAGTTTCTGGCCGTTCGGTCCCACCG
ATGAAGCGGTTGCCTCGTTCGACACCAGCGGATTTTTCAGCGGCTTTGGA
GGTGCCACCAGCGACACTGGGATGTGGTGCTCGTTCCACAAGTCCACCAC
GCACAGTGACGAGACATGCCGTACGCTACAACAGCAGCTGGGCAACAACG
GTAGCGCAAACTGTGCCAACCAGGGGTCGGACTACCCCGCCGTCCTGACT
GCAAGCGATCCTCCTCCCGGTTGTAATATTGAGGAGCAAGGCATATCGTT
CGCTGCAGTAGAAGTGCCGAACAGGGCCGAACCACCAAAAGAGGAGAGTT
TCTGGCCGTTCGGTCCCACCGATGAAGCGGTTGCCTCGTTCGACACCAGC
GGATTTTTCAGCGGCTTTGGAGGTGCCACCAGCGACACTGGG
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