mRNA_F-serratus_M_contig7802.19062.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7802.19062.1
Unique NamemRNA_F-serratus_M_contig7802.19062.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7802.19062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7802contigF-serratus_M_contig7802:2279..2753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932326.2767065-CDS-F-serratus_M_contig7802:2278..26261622932326.2767065-CDS-F-serratus_M_contig7802:2278..2626Fucus serratus maleCDSF-serratus_M_contig7802 2279..2626 +
1690964254.4663877-CDS-F-serratus_M_contig7802:2278..26261690964254.4663877-CDS-F-serratus_M_contig7802:2278..2626Fucus serratus maleCDSF-serratus_M_contig7802 2279..2626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932326.2985296-UTR-F-serratus_M_contig7802:2626..27531622932326.2985296-UTR-F-serratus_M_contig7802:2626..2753Fucus serratus maleUTRF-serratus_M_contig7802 2627..2753 +
1690964254.4774978-UTR-F-serratus_M_contig7802:2626..27531690964254.4774978-UTR-F-serratus_M_contig7802:2626..2753Fucus serratus maleUTRF-serratus_M_contig7802 2627..2753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7802.19062.1prot_F-serratus_M_contig7802.19062.1Fucus serratus malepolypeptideF-serratus_M_contig7802 2279..2626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7802.19062.1

>prot_F-serratus_M_contig7802.19062.1 ID=prot_F-serratus_M_contig7802.19062.1|Name=mRNA_F-serratus_M_contig7802.19062.1|organism=Fucus serratus male|type=polypeptide|length=116bp
ALIPVEPLKQRVSRPTPPCVTESSSARVTRCRAGPGLSLPQEEGGEEQRL
SGPEATGDAAKACASDERTKEAVSGGGEEDEHAKKGEGVQSARGGALAGP
VGAWRLPRCEISASR*
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mRNA from alignment at F-serratus_M_contig7802:2279..2753+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7802.19062.1 ID=mRNA_F-serratus_M_contig7802.19062.1|Name=mRNA_F-serratus_M_contig7802.19062.1|organism=Fucus serratus male|type=mRNA|length=475bp|location=Sequence derived from alignment at F-serratus_M_contig7802:2279..2753+ (Fucus serratus male)
GCGTTAATCCCCGTCGAGCCTTTGAAACAAAGAGTATCAAGACCGACGCC
TCCCTGTGTGACGGAGTCCAGCTCTGCAAGGGTGACCCGTTGCCGGGCGG
GACCGGGGCTTTCCCTGCCTCAAGAGGAGGGCGGCGAGGAGCAACGGTTG
TCGGGCCCGGAGGCAACGGGAGATGCTGCCAAAGCCTGCGCATCAGACGA
AAGGACCAAAGAGGCGGTATCAGGTGGCGGTGAGGAGGACGAACACGCAA
AAAAAGGGGAAgGGGTTCAGTCTGCACGAGGAGGAGCTCTCGCAGGTCCA
GTCGGCGCCTGGCGATTGCCTCGTTGCGAGATCTCCGCATCGCGCTGACT
AGACCTAGTTCTCTCTCCTTCAGGGTTTGTCTCTTCCGTTGCCTCCGGGT
CCGATGACCGATGCTCCTCATCGTCCTCCTCCGAGGCAGGGAAATCCTCG
GTCCCACCCGACCAACAGGTCACCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7802:2279..2753+

>mRNA_F-serratus_M_contig7802.19062.1 ID=mRNA_F-serratus_M_contig7802.19062.1|Name=mRNA_F-serratus_M_contig7802.19062.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig7802:2279..2753+ (Fucus serratus male)
GCGTTAATCCCCGTCGAGCCTTTGAAACAAAGAGTATCAAGACCGACGCC
TCCCTGTGTGACGGAGTCCAGCTCTGCAAGGGTGACCCGTTGCCGGGCGG
GACCGGGGCTTTCCCTGCCTCAAGAGGAGGGCGGCGAGGAGCAACGGTTG
TCGGGCCCGGAGGCAACGGGAGATGCTGCCAAAGCCTGCGCATCAGACGA
AAGGACCAAAGAGGCGGTATCAGGTGGCGGTGAGGAGGACGAACACGCAA
AAAAAGGGGAAgGGGTTCAGTCTGCACGAGGAGGAGCTCTCGCAGGTCCA
GTCGGCGCCTGGCGATTGCCTCGTTGCGAGATCTCCGCATCGCGCTGAGC
GTTAATCCCCGTCGAGCCTTTGAAACAAAGAGTATCAAGACCGACGCCTC
CCTGTGTGACGGAGTCCAGCTCTGCAAGGGTGACCCGTTGCCGGGCGGGA
CCGGGGCTTTCCCTGCCTCAAGAGGAGGGCGGCGAGGAGCAACGGTTGTC
GGGCCCGGAGGCAACGGGAGATGCTGCCAAAGCCTGCGCATCAGACGAAA
GGACCAAAGAGGCGGTATCAGGTGGCGGTGAGGAGGACGAACACGCAAAA
AAAGGGGAAgGGGTTCAGTCTGCACGAGGAGGAGCTCTCGCAGGTCCAGT
CGGCGCCTGGCGATTGCCTCGTTGCGAGATCTCCGCATCGCGCTGA
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