mRNA_F-serratus_M_contig78.19047.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig78.19047.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.390e-20 Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 1
Query: 1 GPSKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLNIEKDTPDRLWK------ATKASGLLKTKKSRVTRVPFLRPRKVTWSAS 273
GPS+CLDAF VAL+Q CDG WY ST QLQL SL FCVACR V T+HL +++ TP RL+ A + G +K+ RVP LR RKVTW S
Sbjct: 26 GPSRCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLS 122
BLAST of mRNA_F-serratus_M_contig78.19047.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 1.980e-19 Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query: 1 GPSKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLNIEKDTPDRLWKATKASGLLKTKKSR-VTRVPFLRPRKVTWSASFSGLRAMS 297
GPS+CLDA ++AL+Q G+ WYTST+QLQL SL+ C +CR +H + LN++ TP RLW+ T + ++ K R VTRVP +R R VTW LR M+
Sbjct: 8 GPSRCLDALIIALNQASGGE-WYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMT 106
BLAST of mRNA_F-serratus_M_contig78.19047.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE) HSP 1 Score: 100 bits (248), Expect = 4.560e-19 Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 1
Query: 1 GPSKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLNIEKDTPDRLWKATKASGLLKTKKSR-VTRVPFLRPRKVTWSASFSGLRAMSDWLNRVPKVSSRNDTGHA 351
GPS+CLDA ++AL+Q G+ WYTST+QLQL SL+ C ACR +H + LN++ TP RLW+ T + ++ K R VTRVP +R R VTW ++P V+ RN TG A
Sbjct: 39 GPSRCLDALIIALNQASGGE-WYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTW---------------KLPGVALRNMTGDA 140
BLAST of mRNA_F-serratus_M_contig78.19047.1 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 9.770e-18 Identity = 53/112 (47.32%), Postives = 66/112 (58.93%), Query Frame = 1
Query: 1 GPSKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLNIEKDTPDRLWKAT------KASGLLKTKKSRV-TRVPFLRPRKVTWS--ASFSGLRAMSDWLN 309
G S+CL+AF+VALD TCDG+ WY ST QLQL SL C ACRGV T+ L++E+ TP+ LW + +G K +R TRVP PR+V W A GL W N
Sbjct: 8 GDSQCLEAFVVALDLTCDGEKWYASTQQLQLASLDLCKACRGVPTLALSVERSTPEYLWAEAARGPRGRLTGEKKPPAARTRTRVPPFGPRRVMWKLRARELGLARKELWAN 119
BLAST of mRNA_F-serratus_M_contig78.19047.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 1.440e-17 Identity = 63/176 (35.80%), Postives = 94/176 (53.41%), Query Frame = 1
Query: 1 GPSK--CLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLNIEKDTPDRLWKATKASGLLKTKKSRVTRVPFLRPRKVTWSASFSG-LRAMSDWLNRVPKVSSRNDTGHAMLTIGXXXXXXXXXXXXXXXXXXXXXXXLYT--LRYLTFELALNKPIDQVEFPASL 513
GP++ CL+A +VAL++TCDGK+WYTST +LQL SL FC+ACR TVHLN+++ P RL + A K+ TRVP LR R+VTW+ + LR + + + + G ++ + + L+ +TF N+PI++V+FPASL
Sbjct: 45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPP-HPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQPIERVKFPASL 219
BLAST of mRNA_F-serratus_M_contig78.19047.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 3.070e-17 Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 1
Query: 1 GPSKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLNIEK-DTPDRLWKATKAS-GLLKTKKSRVTRVPFLRPRKVTW 264
GP +CL+AF VAL+ +CDG WYTST +LQL SLQFCV CR V ++HL + P RLW A+ K+ T VP RPR+VTW
Sbjct: 3 GPGRCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEARTGAKRPSTTPVPVFRPREVTW 92
BLAST of mRNA_F-serratus_M_contig78.19047.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 3.310e-16 Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 1
Query: 7 SKCLDAFLVALDQTCDG--KAWYTSTLQLQLVSLQFCVACRGVHTVHLNIEKDTPDRLW 177
SKCLDAF+VAL+QTCDG K WY STL+LQLVSL+FC ACR V T+H+ +++ TP LW
Sbjct: 39 SKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLW 97
BLAST of mRNA_F-serratus_M_contig78.19047.1 vs. uniprot
Match: A0A6H5JF56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF56_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 1.640e-15 Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = 1
Query: 1 GPSKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLNIEKDTPDRLW--KATKASGLLKTKKSRVTRVPFLRPRKVTW 264
G ++CLDAF+VAL+Q+CDGK WYTS LQL SL FCVACR V L ++K TP RLW T +L T VTRVP +R R+V W
Sbjct: 32 GLNRCLDAFVVALNQSCDGKKWYTSIAGLQLASLAFCVACRNVLAPCLTVDKGTPLRLWCGPCTTPLEVLTT----VTRVPAIRVREVVW 117
BLAST of mRNA_F-serratus_M_contig78.19047.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 5.290e-15 Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 1 GPSKCLDAFLVALDQTCDG--KAWYTSTLQLQLVSLQFCVACRGVHTVHLNIEKDTPDRLWKATKASGLLKTKKSRVT----RVPFLRPRKVTWS 267
G S+CL AF+VAL+QTC+G K WY STL+LQLVSL+FC ACR V T+H+ +++ TP LW K+ K K+SR RVP ++ +TW+
Sbjct: 13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTK-KRSREACVSNRVPAVQASGLTWA 106
BLAST of mRNA_F-serratus_M_contig78.19047.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.220e-14 Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1
Query: 7 SKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLNIEKDTPDRLWKATKASGLLKTKKSRVTRVPFLRPRKVTWSA-SFSGLR 288
S CL VAL++TCDGK+WYTST +LQL SL+ C+ACR T+HL ++ TP RL A A K+ TRVP LR R+ TW+ + SG+R
Sbjct: 134 SSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSP-HPKRLCGTRVPRLRARRATWNVPTASGMR 227 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig78.19047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig78.19047.1 >prot_F-serratus_M_contig78.19047.1 ID=prot_F-serratus_M_contig78.19047.1|Name=mRNA_F-serratus_M_contig78.19047.1|organism=Fucus serratus male|type=polypeptide|length=485bp GPSKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLNIback to top mRNA from alignment at F-serratus_M_contig78:258645..261278- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig78.19047.1 ID=mRNA_F-serratus_M_contig78.19047.1|Name=mRNA_F-serratus_M_contig78.19047.1|organism=Fucus serratus male|type=mRNA|length=2634bp|location=Sequence derived from alignment at F-serratus_M_contig78:258645..261278- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig78:258645..261278- >mRNA_F-serratus_M_contig78.19047.1 ID=mRNA_F-serratus_M_contig78.19047.1|Name=mRNA_F-serratus_M_contig78.19047.1|organism=Fucus serratus male|type=CDS|length=2910bp|location=Sequence derived from alignment at F-serratus_M_contig78:258645..261278- (Fucus serratus male)back to top |