mRNA_F-serratus_M_contig78.19048.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig78.19048.1
Unique NamemRNA_F-serratus_M_contig78.19048.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig78.19048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig78contigF-serratus_M_contig78:311957..312138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size171
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932321.6986942-CDS-F-serratus_M_contig78:311956..3120411622932321.6986942-CDS-F-serratus_M_contig78:311956..312041Fucus serratus maleCDSF-serratus_M_contig78 311957..312041 +
1690964252.386312-CDS-F-serratus_M_contig78:311956..3120411690964252.386312-CDS-F-serratus_M_contig78:311956..312041Fucus serratus maleCDSF-serratus_M_contig78 311957..312041 +
1622932321.7157803-CDS-F-serratus_M_contig78:312053..3121361622932321.7157803-CDS-F-serratus_M_contig78:312053..312136Fucus serratus maleCDSF-serratus_M_contig78 312054..312136 +
1690964252.3973336-CDS-F-serratus_M_contig78:312053..3121361690964252.3973336-CDS-F-serratus_M_contig78:312053..312136Fucus serratus maleCDSF-serratus_M_contig78 312054..312136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig78.19048.1prot_F-serratus_M_contig78.19048.1Fucus serratus malepolypeptideF-serratus_M_contig78 311957..312136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig78.19048.1

>prot_F-serratus_M_contig78.19048.1 ID=prot_F-serratus_M_contig78.19048.1|Name=mRNA_F-serratus_M_contig78.19048.1|organism=Fucus serratus male|type=polypeptide|length=56bp
NPSDVRVSVLKLPCLRLFRTLSTIEKNASIGLCFRYLLQPFPSGTQTVSC
TVATDS
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mRNA from alignment at F-serratus_M_contig78:311957..312138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig78.19048.1 ID=mRNA_F-serratus_M_contig78.19048.1|Name=mRNA_F-serratus_M_contig78.19048.1|organism=Fucus serratus male|type=mRNA|length=182bp|location=Sequence derived from alignment at F-serratus_M_contig78:311957..312138+ (Fucus serratus male)
AATCCATCCGATGTCAGGGTATCAGTACTCAAATTACCCTGCTTGCGACT
ATTTCGTACTCTTTCTACCATTGAGAAAAATGCCTGTTTCAGTATAGCCA
TCGGGCTCTGTTTTCGTTACCTTCTCCAACCCTTCCCTTCCGGTACACAG
ACAGTTAGTTGTACTGTCGCTACAGATAGTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig78:311957..312138+

>mRNA_F-serratus_M_contig78.19048.1 ID=mRNA_F-serratus_M_contig78.19048.1|Name=mRNA_F-serratus_M_contig78.19048.1|organism=Fucus serratus male|type=CDS|length=336bp|location=Sequence derived from alignment at F-serratus_M_contig78:311957..312138+ (Fucus serratus male)
AATCCATCCGATGTCAGGGTATCAGTACTCAAATTACCCTGCTTGCGACT
ATTTCGTACTCTTTCTACCATTGAGAAAAATGCCTAATCCATCCGATGTC
AGGGTATCAGTACTCAAATTACCCTGCTTGCGACTATTTCGTACTCTTTC
TACCATTGAGAAAAATGCCTCCATCGGGCTCTGTTTTCGTTACCTTCTCC
AACCCTTCCCTTCCGGTACACAGACAGTTAGTTGTACTGTCGCTACAGAT
AGTCCATCGGGCTCTGTTTTCGTTACCTTCTCCAACCCTTCCCTTCCGGT
ACACAGACAGTTAGTTGTACTGTCGCTACAGATAGT
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