mRNA_F-serratus_M_contig778.19025.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig778.19025.1
Unique NamemRNA_F-serratus_M_contig778.19025.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig778.19025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig778contigF-serratus_M_contig778:223951..224515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size567
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932318.1247292-CDS-F-serratus_M_contig778:223950..2242951622932318.1247292-CDS-F-serratus_M_contig778:223950..224295Fucus serratus maleCDSF-serratus_M_contig778 223951..224295 +
1690964250.5719237-CDS-F-serratus_M_contig778:223950..2242951690964250.5719237-CDS-F-serratus_M_contig778:223950..224295Fucus serratus maleCDSF-serratus_M_contig778 223951..224295 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932318.1388154-UTR-F-serratus_M_contig778:224295..2245151622932318.1388154-UTR-F-serratus_M_contig778:224295..224515Fucus serratus maleUTRF-serratus_M_contig778 224296..224515 +
1690964250.5830722-UTR-F-serratus_M_contig778:224295..2245151690964250.5830722-UTR-F-serratus_M_contig778:224295..224515Fucus serratus maleUTRF-serratus_M_contig778 224296..224515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig778.19025.1prot_F-serratus_M_contig778.19025.1Fucus serratus malepolypeptideF-serratus_M_contig778 223951..224295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig778.19025.1

>prot_F-serratus_M_contig778.19025.1 ID=prot_F-serratus_M_contig778.19025.1|Name=mRNA_F-serratus_M_contig778.19025.1|organism=Fucus serratus male|type=polypeptide|length=115bp
CYGRQNNFNFCFCYHCFELAPARTCFHLCTMTGAQQSAYFATSPQMQVSW
NQVWRARQRWVKIGPTPRTRQNSEKKTSFDEGIFDVLHTHVKEYPNATAM
EKNACIYGRLPTVL*
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mRNA from alignment at F-serratus_M_contig778:223951..224515+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig778.19025.1 ID=mRNA_F-serratus_M_contig778.19025.1|Name=mRNA_F-serratus_M_contig778.19025.1|organism=Fucus serratus male|type=mRNA|length=565bp|location=Sequence derived from alignment at F-serratus_M_contig778:223951..224515+ (Fucus serratus male)
TGTTACGGACGTCAAAACAACTTTAATTTTTGTTTTTGTTACCATTGCTT
TGAACTCGCACCGGCCCGGACATGTTTTCACTTATGTACAATGACGGGCG
CACAGCAAAGCGCCTACTTCGCAACTTCACCACAAATGCAGGTGTCATGG
AATCAAGTATGGCGAGCGCGCCAACGGTGGGTAAAGATTGGTCCCACCCC
CAGGACACGTCAAAACAGCGAGAAGAAAACTTCGTTTGACGAGGGTATCT
TTGACGTGTTACATACCCACGTTAAAGAGTACCCAAACGCAACAGCAATG
GAAAAAAATGCATGTATATACGGACGGCTTCCTACCGTGCTTTAGTTTGG
CCGATTCGGGGCTATACAGCGTACACACGAGTGGAAAGGGTAAGCCCCGC
TTCCGCCCTTTCTTTCCCCCCTCCCCTACTTTTCCCGCCTACTTCAAGCT
GAAACCATCCGTCCCATTATACCAAACAATTGCCCGAAGATACGTACATT
TACTTTGTGGAAAGAACATCCGCACGACTAAGGATAAGGTAGCCGTCGGC
ACGTACGCGAAAAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig778:223951..224515+

>mRNA_F-serratus_M_contig778.19025.1 ID=mRNA_F-serratus_M_contig778.19025.1|Name=mRNA_F-serratus_M_contig778.19025.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig778:223951..224515+ (Fucus serratus male)
TGTTACGGACGTCAAAACAACTTTAATTTTTGTTTTTGTTACCATTGCTT
TGAACTCGCACCGGCCCGGACATGTTTTCACTTATGTACAATGACGGGCG
CACAGCAAAGCGCCTACTTCGCAACTTCACCACAAATGCAGGTGTCATGG
AATCAAGTATGGCGAGCGCGCCAACGGTGGGTAAAGATTGGTCCCACCCC
CAGGACACGTCAAAACAGCGAGAAGAAAACTTCGTTTGACGAGGGTATCT
TTGACGTGTTACATACCCACGTTAAAGAGTACCCAAACGCAACAGCAATG
GAAAAAAATGCATGTATATACGGACGGCTTCCTACCGTGCTTTAGTGTTA
CGGACGTCAAAACAACTTTAATTTTTGTTTTTGTTACCATTGCTTTGAAC
TCGCACCGGCCCGGACATGTTTTCACTTATGTACAATGACGGGCGCACAG
CAAAGCGCCTACTTCGCAACTTCACCACAAATGCAGGTGTCATGGAATCA
AGTATGGCGAGCGCGCCAACGGTGGGTAAAGATTGGTCCCACCCCCAGGA
CACGTCAAAACAGCGAGAAGAAAACTTCGTTTGACGAGGGTATCTTTGAC
GTGTTACATACCCACGTTAAAGAGTACCCAAACGCAACAGCAATGGAAAA
AAATGCATGTATATACGGACGGCTTCCTACCGTGCTTTAG
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