mRNA_F-serratus_M_contig1251.1902.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1251.1902.1
Unique NamemRNA_F-serratus_M_contig1251.1902.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1251.1902.1 vs. uniprot
Match: A0A6L5DDZ8_9INSE (Uncharacterized protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5DDZ8_9INSE)

HSP 1 Score: 87.8 bits (216), Expect = 3.250e-21
Identity = 41/48 (85.42%), Postives = 41/48 (85.42%), Query Frame = -3 
Query:   11 GLPRRRSVAGLRG*SVTLELRHGPDSYGRQQWGIFCNGRKPDRAIPRE 154
            G PRRRSVAGLRG   TLELRHGPDSYGRQQWGI  NGRKPD AIPRE
Sbjct:   67 GSPRRRSVAGLRGRPATLELRHGPDSYGRQQWGILDNGRKPDPAIPRE 114
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BLAST of mRNA_F-serratus_M_contig1251.1902.1 vs. uniprot
Match: A0A0H3KTH6_BURM1 (Uncharacterized protein n=3 Tax=Burkholderia TaxID=32008 RepID=A0A0H3KTH6_BURM1)

HSP 1 Score: 84.7 bits (208), Expect = 1.380e-20
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 AFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPV*LIILSNQLLIVALVGLYP 162
            AFF HA LL QAFAHC KFPTAASRRSL RVSVPV L++LS+QLLIVALVGLYP
Sbjct:    7 AFFTHAALLDQAFAHCPKFPTAASRRSLGRVSVPVWLVVLSDQLLIVALVGLYP 60
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BLAST of mRNA_F-serratus_M_contig1251.1902.1 vs. uniprot
Match: A0A0M3J755_ANISI (Uncharacterized protein n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3J755_ANISI)

HSP 1 Score: 83.6 bits (205), Expect = 1.170e-19
Identity = 39/50 (78.00%), Postives = 40/50 (80.00%), Query Frame = -3 
Query:    8 KGLPRRRSVAGLRG*SVTLELRHGPDSYGRQQWGIFCNGRKPDRAIPREG 157
            K LP RRSVAGLRG   TL LRHGPDSYGRQQWGI  NGRKPD A+PR G
Sbjct:   55 KSLPSRRSVAGLRGRPATLGLRHGPDSYGRQQWGILDNGRKPDPAMPRAG 104
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BLAST of mRNA_F-serratus_M_contig1251.1902.1 vs. uniprot
Match: A0A6A5LBY6_LUPAL (Uncharacterized protein n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LBY6_LUPAL)

HSP 1 Score: 84.0 bits (206), Expect = 1.720e-19
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = -3 
Query:   11 GLPRRRSVAGLRG*SVTLELRHGPDSYGRQQWGIFCNGRKPDRAIPRE 154
            G PRRRSVAGLRG   TL LRHGPDSYGRQQWGI  NGRKPD A+PRE
Sbjct:   30 GSPRRRSVAGLRGRPATLGLRHGPDSYGRQQWGILDNGRKPDPAMPRE 77
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BLAST of mRNA_F-serratus_M_contig1251.1902.1 vs. uniprot
Match: A0A4V2JP10_9CYAN (Uncharacterized protein n=1 Tax=Westiellopsis prolifica IICB1 TaxID=1970206 RepID=A0A4V2JP10_9CYAN)

HSP 1 Score: 81.6 bits (200), Expect = 3.400e-19
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 AFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPV*LIILSNQLLIVALVGLY 159
            AF PHAVLL QAFAHC KFPTAASRRSLDRVSVPV LIILS+QLLIVALV  Y
Sbjct:   22 AFLPHAVLLRQAFAHCGKFPTAASRRSLDRVSVPVWLIILSDQLLIVALVVPY 74
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BLAST of mRNA_F-serratus_M_contig1251.1902.1 vs. uniprot
Match: A0A6B2E644_9DIPT (Putative conserved protein with signal anchor (Fragment) n=1 Tax=Phlebotomus kandelakii TaxID=1109342 RepID=A0A6B2E644_9DIPT)

HSP 1 Score: 81.6 bits (200), Expect = 5.970e-19
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 AFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPV*LIILSNQLLIVALVGLYP 162
            AFF HA LL Q F HC KFPTAASRRSL RVSVPV LI+LS+QLLIVALVGLYP
Sbjct:   43 AFFAHAALLDQGFPHCPKFPTAASRRSLGRVSVPVWLIVLSDQLLIVALVGLYP 96
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BLAST of mRNA_F-serratus_M_contig1251.1902.1 vs. uniprot
Match: A0A0N7F2B4_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium 5G12 TaxID=1701325 RepID=A0A0N7F2B4_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 1.710e-18
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 AFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPV*LIILSNQLLIVALVGLYP 162
            AFFPHA  L QAFAHC +FPTAASRRSL RVSVPV LI+LS+QL IVALVG YP
Sbjct:   14 AFFPHAASLRQAFAHCARFPTAASRRSLGRVSVPVWLIVLSDQLRIVALVGRYP 67
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BLAST of mRNA_F-serratus_M_contig1251.1902.1 vs. uniprot
Match: A0A0S6TJ15_9PROT (Uncharacterized protein n=1 Tax=Gluconobacter frateurii NBRC 103465 TaxID=1307834 RepID=A0A0S6TJ15_9PROT)

HSP 1 Score: 80.1 bits (196), Expect = 4.790e-18
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    4 FFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPV*LIILSNQLLIVALVGLYP 162
            FF HA LL QAFAHC  FPTAASRRSL RVSVPV LIILSNQL I+ALVGLYP
Sbjct:   70 FFTHAALLDQAFAHCPIFPTAASRRSLGRVSVPVWLIILSNQLSIIALVGLYP 122
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BLAST of mRNA_F-serratus_M_contig1251.1902.1 vs. uniprot
Match: A0A6A5LFE9_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LFE9_LUPAL)

HSP 1 Score: 84.0 bits (206), Expect = 6.010e-18
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = -3 
Query:   11 GLPRRRSVAGLRG*SVTLELRHGPDSYGRQQWGIFCNGRKPDRAIPRE 154
            G PRRRSVAGLRG   TL LRHGPDSYGRQQWGI  NGRKPD A+PRE
Sbjct:  284 GSPRRRSVAGLRGRPATLGLRHGPDSYGRQQWGILDNGRKPDPAMPRE 331
[Close]
BLAST of mRNA_F-serratus_M_contig1251.1902.1 vs. uniprot
Match: A0A6A5LAP2_LUPAL (HTH araC/xylS-type domain-containing protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LAP2_LUPAL)

HSP 1 Score: 84.0 bits (206), Expect = 7.570e-18
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = -3 
Query:   11 GLPRRRSVAGLRG*SVTLELRHGPDSYGRQQWGIFCNGRKPDRAIPRE 154
            G PRRRSVAGLRG   TL LRHGPDSYGRQQWGI  NGRKPD A+PRE
Sbjct:  311 GSPRRRSVAGLRGRPATLGLRHGPDSYGRQQWGILDNGRKPDPAMPRE 358
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1251.1902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5DDZ8_9INSE3.250e-2185.42Uncharacterized protein n=1 Tax=Ephemera danica Ta... [more]
A0A0H3KTH6_BURM11.380e-2083.33Uncharacterized protein n=3 Tax=Burkholderia TaxID... [more]
A0A0M3J755_ANISI1.170e-1978.00Uncharacterized protein n=1 Tax=Anisakis simplex T... [more]
A0A6A5LBY6_LUPAL1.720e-1981.25Uncharacterized protein n=2 Tax=Lupinus albus TaxI... [more]
A0A4V2JP10_9CYAN3.400e-1986.79Uncharacterized protein n=1 Tax=Westiellopsis prol... [more]
A0A6B2E644_9DIPT5.970e-1981.48Putative conserved protein with signal anchor (Fra... [more]
A0A0N7F2B4_9BACT1.710e-1879.63Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
A0A0S6TJ15_9PROT4.790e-1883.02Uncharacterized protein n=1 Tax=Gluconobacter frat... [more]
A0A6A5LFE9_LUPAL6.010e-1881.25Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5LAP2_LUPAL7.570e-1881.25HTH araC/xylS-type domain-containing protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1251contigF-serratus_M_contig1251:119330..119491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog221288.JH992901_gene2608
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs1GAJY@1117,2DPM9@1,332MQ@2
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size162
Cds size108
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929178.5715985-UTR-F-serratus_M_contig1251:119329..1193831622929178.5715985-UTR-F-serratus_M_contig1251:119329..119383Fucus serratus maleUTRF-serratus_M_contig1251 119330..119383 -
1690962738.7609437-UTR-F-serratus_M_contig1251:119329..1193831690962738.7609437-UTR-F-serratus_M_contig1251:119329..119383Fucus serratus maleUTRF-serratus_M_contig1251 119330..119383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929178.58446-CDS-F-serratus_M_contig1251:119383..1194911622929178.58446-CDS-F-serratus_M_contig1251:119383..119491Fucus serratus maleCDSF-serratus_M_contig1251 119384..119491 -
1690962738.775505-CDS-F-serratus_M_contig1251:119383..1194911690962738.775505-CDS-F-serratus_M_contig1251:119383..119491Fucus serratus maleCDSF-serratus_M_contig1251 119384..119491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1251.1902.1prot_F-serratus_M_contig1251.1902.1Fucus serratus malepolypeptideF-serratus_M_contig1251 119384..119491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1251.1902.1

>prot_F-serratus_M_contig1251.1902.1 ID=prot_F-serratus_M_contig1251.1902.1|Name=mRNA_F-serratus_M_contig1251.1902.1|organism=Fucus serratus male|type=polypeptide|length=36bp
AFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPV*
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mRNA from alignment at F-serratus_M_contig1251:119330..119491-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1251.1902.1 ID=mRNA_F-serratus_M_contig1251.1902.1|Name=mRNA_F-serratus_M_contig1251.1902.1|organism=Fucus serratus male|type=mRNA|length=162bp|location=Sequence derived from alignment at F-serratus_M_contig1251:119330..119491- (Fucus serratus male)
GCTTTCTTCCCTCACGCGGTATTGCTCTGTCAGGCTTTCGCCCATTGCAG
AAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTC
CAGTGTGACTGATCATCCTCTCAAACCAGCTACTGATCGTCGCCTTGGTA
GGCCTTTACCCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1251:119330..119491-

>mRNA_F-serratus_M_contig1251.1902.1 ID=mRNA_F-serratus_M_contig1251.1902.1|Name=mRNA_F-serratus_M_contig1251.1902.1|organism=Fucus serratus male|type=CDS|length=216bp|location=Sequence derived from alignment at F-serratus_M_contig1251:119330..119491- (Fucus serratus male)
GCTTTCTTCCCTCACGCGGTATTGCTCTGTCAGGCTTTCGCCCATTGCAG
AAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTC
CAGTGTGAGCTTTCTTCCCTCACGCGGTATTGCTCTGTCAGGCTTTCGCC
CATTGCAGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGT
CTCAGTTCCAGTGTGA
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