mRNA_F-serratus_M_contig776.19018.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig776.19018.1
Unique NamemRNA_F-serratus_M_contig776.19018.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig776.19018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig776contigF-serratus_M_contig776:343701..346163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog2880.D7FQV4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1455
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig776.19018.1prot_F-serratus_M_contig776.19018.1Fucus serratus malepolypeptideF-serratus_M_contig776 344560..346104 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932317.3414853-UTR-F-serratus_M_contig776:343700..3445591622932317.3414853-UTR-F-serratus_M_contig776:343700..344559Fucus serratus maleUTRF-serratus_M_contig776 343701..344559 -
1690964250.218506-UTR-F-serratus_M_contig776:343700..3445591690964250.218506-UTR-F-serratus_M_contig776:343700..344559Fucus serratus maleUTRF-serratus_M_contig776 343701..344559 -
1622932317.4105022-UTR-F-serratus_M_contig776:346104..3461631622932317.4105022-UTR-F-serratus_M_contig776:346104..346163Fucus serratus maleUTRF-serratus_M_contig776 346105..346163 -
1690964250.273915-UTR-F-serratus_M_contig776:346104..3461631690964250.273915-UTR-F-serratus_M_contig776:346104..346163Fucus serratus maleUTRF-serratus_M_contig776 346105..346163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932317.363119-CDS-F-serratus_M_contig776:344559..3446711622932317.363119-CDS-F-serratus_M_contig776:344559..344671Fucus serratus maleCDSF-serratus_M_contig776 344560..344671 -
1690964250.236746-CDS-F-serratus_M_contig776:344559..3446711690964250.236746-CDS-F-serratus_M_contig776:344559..344671Fucus serratus maleCDSF-serratus_M_contig776 344560..344671 -
1622932317.380392-CDS-F-serratus_M_contig776:345463..3457581622932317.380392-CDS-F-serratus_M_contig776:345463..345758Fucus serratus maleCDSF-serratus_M_contig776 345464..345758 -
1690964250.2464654-CDS-F-serratus_M_contig776:345463..3457581690964250.2464654-CDS-F-serratus_M_contig776:345463..345758Fucus serratus maleCDSF-serratus_M_contig776 345464..345758 -
1622932317.3958933-CDS-F-serratus_M_contig776:345974..3461041622932317.3958933-CDS-F-serratus_M_contig776:345974..346104Fucus serratus maleCDSF-serratus_M_contig776 345975..346104 -
1690964250.264527-CDS-F-serratus_M_contig776:345974..3461041690964250.264527-CDS-F-serratus_M_contig776:345974..346104Fucus serratus maleCDSF-serratus_M_contig776 345975..346104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig776.19018.1

>prot_F-serratus_M_contig776.19018.1 ID=prot_F-serratus_M_contig776.19018.1|Name=mRNA_F-serratus_M_contig776.19018.1|organism=Fucus serratus male|type=polypeptide|length=179bp
MLDTCGILEPIDPVVSITYDDDQGNIPDLTLVVNGTDGFTCPPATSPPTS
MPMPIPSPTPNPAPSLTLYPTKTVEICSNGITGIEGYGKCCALGCGKCKT
NDCGTRAIHAGLTTDDCCPSRIQELGVYCDDCGIAPCIINKPSMCDECKH
ENNKGTGHDVAPIVNVHVVTNVGTNTND*
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mRNA from alignment at F-serratus_M_contig776:343701..346163-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig776.19018.1 ID=mRNA_F-serratus_M_contig776.19018.1|Name=mRNA_F-serratus_M_contig776.19018.1|organism=Fucus serratus male|type=mRNA|length=2463bp|location=Sequence derived from alignment at F-serratus_M_contig776:343701..346163- (Fucus serratus male)
ATGATACTGTTTTGTTTTCCGTCGACAACCTCGAGGGCAATTCCCGCGAT
TTCACGGTGATGCTGGACACTTGCGGGATACTTGAACCTATTGATCCCGT
CGTGTCCATCACGTATGACGACGACCAAGGGAACATCCCAGACCTCACAT
TGGTCGTCAACGGCACGGATGGCTTCACATGCCCCCCAGGTATTATGCCC
GCCTTGTCGTGTAGATATTGTGCAACGATATTTACGTATAAGTAGTTTAG
GAGTATGAGCGCGATAAGCTTAGTGTAAAATGACTTCCTTATTTGTTTGT
TAATATCGCATGCAGTAGTAGCAGTTTAGCTACAGCACAAGTTGACTCTT
CCCATATGCCTCGTACTTTCTCTTCACTTGCTGCGTGCCGAGATCATTTC
TACAGCTACGTCGCCTCCGACGTCAATGCCGATGCCTATCCCAAGCCCAA
CCCCCAACCCGGCGCCCAGTCTAACGCTATATCCGACAAAGACTGTCGAA
ATATGTAGCAATGGGATCACTGGCATAGAAGGATACGGAAAATGTTGCGC
GCTTGGGTGTGGCAAGTGCAAAACAAATGACTGCGGTACTAGGGCAATTC
ACGCTGGTCTCACCACGGATGATTGCTGCCCGTCCAGAATCCAAGAGCTA
GGTGTATACTGTGACGACTGCGGTATCGCACCGTGCATCATCAACAAGCC
GTGAGTATATGCATTATTCGATTCAGTCAATGAACTTGTCTTCGGCCGTC
TGTCCCCCCGTTTTGGCTTAGTTGAACAACGTAAATAAATACGGTAAGCG
TTTATGGTCGACAGCTCCAGGTCAGTTTTCTAAACACTTGAATGTGTCCT
TTCTACAGATTGTTGGTTGATCGAGAATGACCCCCGGAACCAAGTTTTAG
AGGAAAAGGTTAACGTATCTTTATATTCTAAACATCCACCGAGTCAGTGG
GGACATTGTCAGTTTTATGGTTTTTGTTTTTTCATATTTTTGACGGCCCT
GTAAATATCATGTGTTATTGCAGAGTGCCCTGTAAAATTAGCATCGATTG
AACGACTTGCTAGGCTCTATTGTGCGGTAGAAAACAAAATTGATGTGTCA
ACACATATCCCAGCTAAGGCGCTTCAAAAGTACCACGTAGAAGAACTGTT
TTATAATACTCTTCCTTGGCTCCATCATTTGACCAAAATCGTTAGGCTAG
TTTTTTTTCGTCATGTTTGGTTATTTTTAAGCTTCTAAACTGGAGCGGAC
TGACCATAACGTTTTATTTTGTTTTCTGATGCCAGGATACTCTCCTTTGA
AAAATGAATATTATTTATTTGGCATCGCAGCTACGATATGGCCGTGGTTC
GATATATATGTTCGTCTCGTGTTATATATTCCTGGCGACAGCACTCCGTG
CTCATGACGTGTAAAAATCCGACGGCTTTCGATTTCTCCCACTAAGCAGT
GTCGTGTGTTCTGCCATCTCGTTATCGTATCTAATCGCGCAGGTCTATGT
GTGACGAGTGCAAGCACGAAAATAACAAGGGCACGGGCCATGATGTTGCC
CCGATAGTGAACGTCCATGTTGTCACAAATGTCGGCACAAACACGAATGA
CTAGCCAAGCACCAGCCTTGGTAACTTTGTTGGAAATATAGCTGGGGCAG
TTGATCCGGGTGTGGCGCTCACGTCTCCTATTCACCTTTCGGCGCTATAT
TCGATTGACGCTTTTTGTAGGGGACTATCTGAGTTCCGTCGGATCTCATC
CACCTGAAGTAAGAAGCCATATTTACTGCGACCTGGGCCAGCCAGTATTG
TCTATGATGTACAATACACACATCTTCGTATTTTATCGGGAGAGCACAAA
GGAATTATGCCTCATGGCATGGCAGGACATATCATATAGTAGTCGATATA
GGCATCTGCTTGAATTTCCATCTTCTATGATTCCGATGGATACGCCCGTT
CGATGTCTTAAGTCGCGTATAGCCCCTGGCAGGAGGGGTCATTCAATATG
TTTGCAATATGTAATTTATTCTTGATTTGCGTTTGGCAATAAACGCGAGA
TCCTTGGTTACTGACTCCTTGTTCTGGCATAAGAGGTCTTGTAAGAATTG
GAAGAAAAAGTATCTGGCATATTTATATCAGATAGATGAGTCGCTCATCA
TGCTAAACGGGACAGGCAAGTAGGATGAAAGGAATGTGACTTCAAAGCTG
CGGACTGATTTCCCTCAGTCGACCACCTTTATTCTCTAGTCTTTATCGAT
AGCGACGCGTGCGTATACCCATGTAATGGGAATTCTATGGGGATTCGTAG
ACCAATAGCAGGGACTGGGTTGTGTATTCTATCCCGAAGGCTGAAGCCTA
AATGAGTCGGAATGGAGGGTCTTTGAGCGGGATGGGTCTCACACGGACGG
GAGAGGGAGTGCTGTGTTCGGCGTTGGTTGAGCAGACATGACGTTGACAC
ATGTCAAATGCGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig776:343701..346163-

>mRNA_F-serratus_M_contig776.19018.1 ID=mRNA_F-serratus_M_contig776.19018.1|Name=mRNA_F-serratus_M_contig776.19018.1|organism=Fucus serratus male|type=CDS|length=1074bp|location=Sequence derived from alignment at F-serratus_M_contig776:343701..346163- (Fucus serratus male)
ATGCTGGACACTTGCGGGATACTTGAACCTATTGATCCCGTCGTGTCCAT
CACGTATGACGACGACCAAGGGAACATCCCAGACCTCACATTGGTCGTCA
ACGGCACGGATGGCTTCACATGCCCCCCAGATGCTGGACACTTGCGGGAT
ACTTGAACCTATTGATCCCGTCGTGTCCATCACGTATGACGACGACCAAG
GGAACATCCCAGACCTCACATTGGTCGTCAACGGCACGGATGGCTTCACA
TGCCCCCCAGCTACGTCGCCTCCGACGTCAATGCCGATGCCTATCCCAAG
CCCAACCCCCAACCCGGCGCCCAGTCTAACGCTATATCCGACAAAGACTG
TCGAAATATGTAGCAATGGGATCACTGGCATAGAAGGATACGGAAAATGT
TGCGCGCTTGGGTGTGGCAAGTGCAAAACAAATGACTGCGGTACTAGGGC
AATTCACGCTGGTCTCACCACGGATGATTGCTGCCCGTCCAGAATCCAAG
AGCTAGGTGTATACTGTGACGACTGCGGTATCGCACCGTGCATCATCAAC
AAGCCCTACGTCGCCTCCGACGTCAATGCCGATGCCTATCCCAAGCCCAA
CCCCCAACCCGGCGCCCAGTCTAACGCTATATCCGACAAAGACTGTCGAA
ATATGTAGCAATGGGATCACTGGCATAGAAGGATACGGAAAATGTTGCGC
GCTTGGGTGTGGCAAGTGCAAAACAAATGACTGCGGTACTAGGGCAATTC
ACGCTGGTCTCACCACGGATGATTGCTGCCCGTCCAGAATCCAAGAGCTA
GGTGTATACTGTGACGACTGCGGTATCGCACCGTGCATCATCAACAAGCC
GTCTATGTGTGACGAGTGCAAGCACGAAAATAACAAGGGCACGGGCCATG
ATGTTGCCCCGATAGTGAACGTCCATGTTGTCACAAATGTCGGCACAAAC
ACGAATGACTAGGTCTATGTGTGACGAGTGCAAGCACGAAAATAACAAGG
GCACGGGCCATGATGTTGCCCCGATAGTGAACGTCCATGTTGTCACAAAT
GTCGGCACAAACACGAATGACTAG
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