mRNA_F-serratus_M_contig774.19000.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig774.19000.1
Unique NamemRNA_F-serratus_M_contig774.19000.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig774.19000.1 vs. uniprot
Match: A0A6H5JK27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK27_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 4.820e-27
Identity = 76/191 (39.79%), Postives = 120/191 (62.83%), Query Frame = 1 
Query:    1 LKQNQVAGPITFLTEQLYLVKCDEECFLASVIVDCQPSGSTFEVP---LDLDFRVGGPYDEDDDSDYDPERLDDEQMQDYMAILQETYE--VLGRNKDGDVWNRVNQDTAAPVYDQ-GKFFIRAEVEHFSQWCLGRTINMESAYEDQLVNWPRRPGKKELEFVNATDRALIILVLPTTWSNKAVESVAAGV 555
            LK+ +VAGPI+ +T++ ++V+  +  FL S ++DCQPSG+ F+ P   L LDF V G  DED     D +  D E  ++ +AIL+ TY+  V  R ++G  W  +++D A    DQ  K+F+R ++ HFS  CLG  +++ S+ +  +V+   R  K++LEFVNATD+ ++  VLPT +S  A +S+ AGV
Sbjct:  809 LKEGEVAGPISVVTDKRHIVERGDGLFLLSTMIDCQPSGTIFQDPQNPLVLDF-VFGEEDEDSQGTDDTDE-DTEDGKEDLAILRATYKARVFWRMEEGQPWE-LHEDGAWDFDDQLKKYFLRVKIRHFSDVCLGTELSLHSSCDSCVVS-RGRTKKRQLEFVNATDKKIVFKVLPTGYSTSATKSINAGV 995
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig774.19000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JK27_9PHAE4.820e-2739.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig774contigF-serratus_M_contig774:307078..307864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size604
Cds size603
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932314.2903326-CDS-F-serratus_M_contig774:307077..3073351622932314.2903326-CDS-F-serratus_M_contig774:307077..307335Fucus serratus maleCDSF-serratus_M_contig774 307078..307335 +
1690964248.4895968-CDS-F-serratus_M_contig774:307077..3073351690964248.4895968-CDS-F-serratus_M_contig774:307077..307335Fucus serratus maleCDSF-serratus_M_contig774 307078..307335 +
1622932314.3102393-CDS-F-serratus_M_contig774:307519..3078641622932314.3102393-CDS-F-serratus_M_contig774:307519..307864Fucus serratus maleCDSF-serratus_M_contig774 307520..307864 +
1690964248.503705-CDS-F-serratus_M_contig774:307519..3078641690964248.503705-CDS-F-serratus_M_contig774:307519..307864Fucus serratus maleCDSF-serratus_M_contig774 307520..307864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig774.19000.1prot_F-serratus_M_contig774.19000.1Fucus serratus malepolypeptideF-serratus_M_contig774 307078..307864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig774.19000.1

>prot_F-serratus_M_contig774.19000.1 ID=prot_F-serratus_M_contig774.19000.1|Name=mRNA_F-serratus_M_contig774.19000.1|organism=Fucus serratus male|type=polypeptide|length=201bp
LKQNQVAGPITFLTEQLYLVKCDEECFLASVIVDCQPSGSTFEVPLDLDF
RVGGPYDEDDDSDYDPERLDDEQMQDYMAILQETYEVLGRNKDGDVWNRV
NQDTAAPVYDQGKFFIRAEVEHFSQWCLGRTINMESAYEDQLVNWPRRPG
KKELEFVNATDRALIILVLPTTWSNKAVESVAAGVAMEHLGAHVAISNAV
E
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mRNA from alignment at F-serratus_M_contig774:307078..307864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig774.19000.1 ID=mRNA_F-serratus_M_contig774.19000.1|Name=mRNA_F-serratus_M_contig774.19000.1|organism=Fucus serratus male|type=mRNA|length=787bp|location=Sequence derived from alignment at F-serratus_M_contig774:307078..307864+ (Fucus serratus male)
CTCAAACAAAATCAAGTAGCCGGGCCGATCACGTTCCTGACAGAACAGCT
ATACCTTGTGAAATGCGACGAAGAGTGCTTTCTAGCCTCCGTTATAGTTG
ATTGTCAGCCATCGGGCAGCACGTTTGAGGTACCACTGGACCTCGACTTC
CGAGTCGGCGGGCCCTACGATGAAGATGACGATTCAGACTATGATCCGGA
ACGCTTGGATGATGAACAGATGCAAGACTACATGGCCATTCTGCAGGAAA
CCTACGAGGTGAGGTCGTCATCGAGAGCATCCGAGCTGCTCGTCAGTTCT
GCATGACTCTGATGATGTAATGATGAAATAAAACAATTTCCTACACTACT
TCAGGTATTATTGTGCTCGGATGTGTCCAACGTACTATGATTTGTGACCC
CAACATGATTCCCACGCCCCCTCAACCACCAACATACATCAGGTGTTAGG
GCGGAACAAGGACGGAGATGTCTGGAATCGTGTCAACCAAGATACGGCAG
CCCCGGTGTACGACCAAGGAAAGTTCTTCATTCGTGCAGAGGTGGAACAT
TTCAGTCAGTGGTGTCTGGGAAGAACAATCAATATGGAATCAGCTTACGA
GGACCAGCTCGTGAACTGGCCACGGCGACCGGGAAAGAAGGAGCTAGAAT
TCGTCAACGCAACTGATAGAGCTTTGATCATCCTCGTGCTTCCGACCACG
TGGTCCAACAAGGCAGTGGAGTCGGTTGCGGCTGGAGTTGCAATGGAACA
TTTGGGTGCACATGTGGCTATTTCGAATGCGGTGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig774:307078..307864+

>mRNA_F-serratus_M_contig774.19000.1 ID=mRNA_F-serratus_M_contig774.19000.1|Name=mRNA_F-serratus_M_contig774.19000.1|organism=Fucus serratus male|type=CDS|length=1206bp|location=Sequence derived from alignment at F-serratus_M_contig774:307078..307864+ (Fucus serratus male)
CTCAAACAAAATCAAGTAGCCGGGCCGATCACGTTCCTGACAGAACAGCT
ATACCTTGTGAAATGCGACGAAGAGTGCTTTCTAGCCTCCGTTATAGTTG
ATTGTCAGCCATCGGGCAGCACGTTTGAGGTACCACTGGACCTCGACTTC
CGAGTCGGCGGGCCCTACGATGAAGATGACGATTCAGACTATGATCCGGA
ACGCTTGGATGATGAACAGATGCAAGACTACATGGCCATTCTGCAGGAAA
CCTACGAGCTCAAACAAAATCAAGTAGCCGGGCCGATCACGTTCCTGACA
GAACAGCTATACCTTGTGAAATGCGACGAAGAGTGCTTTCTAGCCTCCGT
TATAGTTGATTGTCAGCCATCGGGCAGCACGTTTGAGGTACCACTGGACC
TCGACTTCCGAGTCGGCGGGCCCTACGATGAAGATGACGATTCAGACTAT
GATCCGGAACGCTTGGATGATGAACAGATGCAAGACTACATGGCCATTCT
GCAGGAAACCTACGAGGTGTTAGGGCGGAACAAGGACGGAGATGTCTGGA
ATCGTGTCAACCAAGATACGGCAGCCCCGGTGTACGACCAAGGAAAGTTC
TTCATTCGTGCAGAGGTGGAACATTTCAGTCAGTGGTGTCTGGGAAGAAC
AATCAATATGGAATCAGCTTACGAGGACCAGCTCGTGAACTGGCCACGGC
GACCGGGAAAGAAGGAGCTAGAATTCGTCAACGCAACTGATAGAGCTTTG
ATCATCCTCGTGCTTCCGACCACGTGGTCCAACAAGGCAGTGGAGTCGGT
TGCGGCTGGAGTTGCAATGGAACATTTGGGTGCACATGTGGCTATTTCGA
ATGCGGTGGAGGTGTTAGGGCGGAACAAGGACGGAGATGTCTGGAATCGT
GTCAACCAAGATACGGCAGCCCCGGTGTACGACCAAGGAAAGTTCTTCAT
TCGTGCAGAGGTGGAACATTTCAGTCAGTGGTGTCTGGGAAGAACAATCA
ATATGGAATCAGCTTACGAGGACCAGCTCGTGAACTGGCCACGGCGACCG
GGAAAGAAGGAGCTAGAATTCGTCAACGCAACTGATAGAGCTTTGATCAT
CCTCGTGCTTCCGACCACGTGGTCCAACAAGGCAGTGGAGTCGGTTGCGG
CTGGAGTTGCAATGGAACATTTGGGTGCACATGTGGCTATTTCGAATGCG
GTGGAG
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