mRNA_F-serratus_M_contig1251.1900.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1251.1900.1
Unique NamemRNA_F-serratus_M_contig1251.1900.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1251.1900.1 vs. uniprot
Match: A0A5D2T8P3_GOSMU (Uncharacterized protein (Fragment) n=2 Tax=Gossypium TaxID=3633 RepID=A0A5D2T8P3_GOSMU)

HSP 1 Score: 98.2 bits (243), Expect = 1.050e-25
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:   10 VQVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVH 168
            VQV+VVRIFTD SISPSLSLRQCP+RYAFRA RNLPDKEFRYL+TVIVTAAVH
Sbjct:    1 VQVRVVRIFTDMSISPSLSLRQCPDRYAFRASRNLPDKEFRYLKTVIVTAAVH 53
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BLAST of mRNA_F-serratus_M_contig1251.1900.1 vs. uniprot
Match: A0A8J5E9C2_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5E9C2_ZINOF)

HSP 1 Score: 104 bits (260), Expect = 3.220e-25
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 GLSVQVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVH 168
            GLSVQV+VVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVH
Sbjct:   34 GLSVQVRVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVH 89
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BLAST of mRNA_F-serratus_M_contig1251.1900.1 vs. uniprot
Match: A0A2P5XC00_GOSBA (Uncharacterized protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5XC00_GOSBA)

HSP 1 Score: 97.4 bits (241), Expect = 8.590e-25
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:   13 QVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVH 168
            QV+VVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVH
Sbjct:   53 QVRVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVH 104
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BLAST of mRNA_F-serratus_M_contig1251.1900.1 vs. uniprot
Match: YCX91_PHAAO (Uncharacterized protein ORF91 n=6 Tax=Spermatophyta TaxID=58024 RepID=YCX91_PHAAO)

HSP 1 Score: 95.1 bits (235), Expect = 2.510e-24
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:   16 VQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVH 168
            +QVVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTV+VTAAVH
Sbjct:    1 MQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVLVTAAVH 51
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BLAST of mRNA_F-serratus_M_contig1251.1900.1 vs. uniprot
Match: A0A6D2JLF7_9BRAS (Uncharacterized protein n=3 Tax=Pentapetalae TaxID=1437201 RepID=A0A6D2JLF7_9BRAS)

HSP 1 Score: 100 bits (248), Expect = 2.960e-24
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 GLSVQVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVH 168
            G S  VQVVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVH
Sbjct:  123 GASFPVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVH 178
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BLAST of mRNA_F-serratus_M_contig1251.1900.1 vs. uniprot
Match: A0A5N5KVY8_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5KVY8_9ROSI)

HSP 1 Score: 100 bits (248), Expect = 7.620e-24
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 GLSVQVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVH 168
             L V VQVVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVH
Sbjct:  184 NLPVDVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVH 239
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BLAST of mRNA_F-serratus_M_contig1251.1900.1 vs. uniprot
Match: E0NVY9_9FIRM (Uncharacterized protein n=1 Tax=Selenomonas sp. oral taxon 149 str. 67H29BP TaxID=864563 RepID=E0NVY9_9FIRM)

HSP 1 Score: 92.4 bits (228), Expect = 1.930e-23
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 GLSVQVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVH 168
            GLSVQ +V  IFT  SISP  SLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAV+
Sbjct:   10 GLSVQSRVTCIFTGISISPGPSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVY 65
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BLAST of mRNA_F-serratus_M_contig1251.1900.1 vs. uniprot
Match: A0A5J5TAE3_GOSBA (Uncharacterized protein (Fragment) n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A5J5TAE3_GOSBA)

HSP 1 Score: 92.4 bits (228), Expect = 1.990e-23
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:   16 VQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVH 168
            V+VVRIFTD SISPSLS RQCPN Y FRAGRNLPDK+FRYLRTVIVTAAVH
Sbjct:    1 VRVVRIFTDMSISPSLSPRQCPNHYTFRAGRNLPDKKFRYLRTVIVTAAVH 51
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BLAST of mRNA_F-serratus_M_contig1251.1900.1 vs. uniprot
Match: B0TIE7_HELMI (Uncharacterized protein n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) TaxID=498761 RepID=B0TIE7_HELMI)

HSP 1 Score: 94.4 bits (233), Expect = 2.350e-23
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 GLSVQVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVH 168
            GLSV  QV R FT +SISPS SLRQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAV+
Sbjct:   85 GLSVLSQVTRFFTGRSISPSPSLRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVY 140
[Close]
BLAST of mRNA_F-serratus_M_contig1251.1900.1 vs. uniprot
Match: B6G1S7_CLOHT (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=B6G1S7_CLOHT)

HSP 1 Score: 91.7 bits (226), Expect = 3.800e-23
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 GLSVQVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVH 168
            GLSV  QV  IFT  +ISPSL LRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAV+
Sbjct:   10 GLSVLSQVSGIFTGITISPSLLLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVY 65
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1251.1900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D2T8P3_GOSMU1.050e-2590.57Uncharacterized protein (Fragment) n=2 Tax=Gossypi... [more]
A0A8J5E9C2_ZINOF3.220e-2592.86Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A2P5XC00_GOSBA8.590e-2592.31Uncharacterized protein n=1 Tax=Gossypium barbaden... [more]
YCX91_PHAAO2.510e-2490.20Uncharacterized protein ORF91 n=6 Tax=Spermatophyt... [more]
A0A6D2JLF7_9BRAS2.960e-2489.29Uncharacterized protein n=3 Tax=Pentapetalae TaxID... [more]
A0A5N5KVY8_9ROSI7.620e-2489.29Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
E0NVY9_9FIRM1.930e-2383.93Uncharacterized protein n=1 Tax=Selenomonas sp. or... [more]
A0A5J5TAE3_GOSBA1.990e-2388.24Uncharacterized protein (Fragment) n=1 Tax=Gossypi... [more]
B0TIE7_HELMI2.350e-2383.93Uncharacterized protein n=1 Tax=Heliobacterium mod... [more]
B6G1S7_CLOHT3.800e-2383.93Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1251contigF-serratus_M_contig1251:117135..117302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score107.8
Seed ortholog evalue1.6e-21
Seed eggNOG ortholog3880.AES84212
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Cell wall-associated hydrolase
EggNOG OGs2E30T@1,2SA69@2759,37XUE@33090,3GMF3@35493,4JVFX@91835
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929178.4124253-CDS-F-serratus_M_contig1251:117134..1173021622929178.4124253-CDS-F-serratus_M_contig1251:117134..117302Fucus serratus maleCDSF-serratus_M_contig1251 117135..117302 -
1690962738.7010531-CDS-F-serratus_M_contig1251:117134..1173021690962738.7010531-CDS-F-serratus_M_contig1251:117134..117302Fucus serratus maleCDSF-serratus_M_contig1251 117135..117302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1251.1900.1prot_F-serratus_M_contig1251.1900.1Fucus serratus malepolypeptideF-serratus_M_contig1251 117135..117302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1251.1900.1

>prot_F-serratus_M_contig1251.1900.1 ID=prot_F-serratus_M_contig1251.1900.1|Name=mRNA_F-serratus_M_contig1251.1900.1|organism=Fucus serratus male|type=polypeptide|length=56bp
GLSVQVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVI
VTAAVH
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mRNA from alignment at F-serratus_M_contig1251:117135..117302-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1251.1900.1 ID=mRNA_F-serratus_M_contig1251.1900.1|Name=mRNA_F-serratus_M_contig1251.1900.1|organism=Fucus serratus male|type=mRNA|length=168bp|location=Sequence derived from alignment at F-serratus_M_contig1251:117135..117302- (Fucus serratus male)
GGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACAAGTCTAT
TTCACCGAGTCTCTCTCTGAGACAGTGTCCAAATCGTTACGCCTTTCGTG
CGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA
GTTACGGCCGCCGTTCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1251:117135..117302-

>mRNA_F-serratus_M_contig1251.1900.1 ID=mRNA_F-serratus_M_contig1251.1900.1|Name=mRNA_F-serratus_M_contig1251.1900.1|organism=Fucus serratus male|type=CDS|length=336bp|location=Sequence derived from alignment at F-serratus_M_contig1251:117135..117302- (Fucus serratus male)
GGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACAAGTCTAT
TTCACCGAGTCTCTCTCTGAGACAGTGTCCAAATCGTTACGCCTTTCGTG
CGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA
GTTACGGCCGCCGTTCACGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCAT
CTTCACAGACAAGTCTATTTCACCGAGTCTCTCTCTGAGACAGTGTCCAA
ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGC
TACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC
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