mRNA_F-serratus_M_contig774.19001.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig774.19001.1
Unique NamemRNA_F-serratus_M_contig774.19001.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig774.19001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig774contigF-serratus_M_contig774:331755..332219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size325
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig774.19001.1prot_F-serratus_M_contig774.19001.1Fucus serratus malepolypeptideF-serratus_M_contig774 331755..332157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932313.2312746-CDS-F-serratus_M_contig774:331754..3318291622932313.2312746-CDS-F-serratus_M_contig774:331754..331829Fucus serratus maleCDSF-serratus_M_contig774 331755..331829 -
1690964247.9442666-CDS-F-serratus_M_contig774:331754..3318291690964247.9442666-CDS-F-serratus_M_contig774:331754..331829Fucus serratus maleCDSF-serratus_M_contig774 331755..331829 -
1622932313.2499645-CDS-F-serratus_M_contig774:331971..3321571622932313.2499645-CDS-F-serratus_M_contig774:331971..332157Fucus serratus maleCDSF-serratus_M_contig774 331972..332157 -
1690964247.955121-CDS-F-serratus_M_contig774:331971..3321571690964247.955121-CDS-F-serratus_M_contig774:331971..332157Fucus serratus maleCDSF-serratus_M_contig774 331972..332157 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932313.2667074-UTR-F-serratus_M_contig774:332157..3322191622932313.2667074-UTR-F-serratus_M_contig774:332157..332219Fucus serratus maleUTRF-serratus_M_contig774 332158..332219 -
1690964247.9652872-UTR-F-serratus_M_contig774:332157..3322191690964247.9652872-UTR-F-serratus_M_contig774:332157..332219Fucus serratus maleUTRF-serratus_M_contig774 332158..332219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig774.19001.1

>prot_F-serratus_M_contig774.19001.1 ID=prot_F-serratus_M_contig774.19001.1|Name=mRNA_F-serratus_M_contig774.19001.1|organism=Fucus serratus male|type=polypeptide|length=87bp
MPEEVGKIFDSCLAAMGSAQAFDQLTEVHEGLPLIMYTVKQSSVPLFEAV
FGAMTTALDSYQLTRIFARGSPRGNLPLLLLAAEEGN
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mRNA from alignment at F-serratus_M_contig774:331755..332219-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig774.19001.1 ID=mRNA_F-serratus_M_contig774.19001.1|Name=mRNA_F-serratus_M_contig774.19001.1|organism=Fucus serratus male|type=mRNA|length=465bp|location=Sequence derived from alignment at F-serratus_M_contig774:331755..332219- (Fucus serratus male)
CAAACAACTAATGTTGTTTGCTCGCTCCAGACCGGCCCCTGTTGGACGTT
GTACGGACGAACATGCCAGAAGAGGTGGGCAAAATCTTTGATTCTTGCCT
CGCGGCTATGGGATCGGCGCAAGCGTTCGATCAGCTCACGGAGGTTCACG
AGGGGCTGCCCTTGATCATGTACACCGTCAAGCAAAGCTCTGTGCCGCTA
TTCGAAGCGGTGTTCGGAGCCATGACGACCGCACTCGATAGCTACCAGGT
GGGGACATGACAGTGCATATGATGCCATTACCCTACAAAACCGCCTCAAC
ACCTGATCATTCTCACAGAGAGCCCTCAGTCACAGCCCGAACAAATCAAA
AACATTGCTTTCCACGATCCTCCTGTGCTTCGCCTGGCAGTTGACGAGAA
TTTTCGCCCGGGGAAGCCCGCGTGGGAATTTACCGCTGCTACTCCTTGCG
GCCGAAGAAGGCAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig774:331755..332219-

>mRNA_F-serratus_M_contig774.19001.1 ID=mRNA_F-serratus_M_contig774.19001.1|Name=mRNA_F-serratus_M_contig774.19001.1|organism=Fucus serratus male|type=CDS|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig774:331755..332219- (Fucus serratus male)
ATGCCAGAAGAGGTGGGCAAAATCTTTGATTCTTGCCTCGCGGCTATGGG
ATCGGCGCAAGCGTTCGATCAGCTCACGGAGGTTCACGAGGGGCTGCCCT
TGATCATGTACACCGTCAAGCAAAGCTCTGTGCCGCTATTCGAAGCGGTG
TTCGGAGCCATGACGACCGCACTCGATAGCTACCAGATGCCAGAAGAGGT
GGGCAAAATCTTTGATTCTTGCCTCGCGGCTATGGGATCGGCGCAAGCGT
TCGATCAGCTCACGGAGGTTCACGAGGGGCTGCCCTTGATCATGTACACC
GTCAAGCAAAGCTCTGTGCCGCTATTCGAAGCGGTGTTCGGAGCCATGAC
GACCGCACTCGATAGCTACCAGTTGACGAGAATTTTCGCCCGGGGAAGCC
CGCGTGGGAATTTACCGCTGCTACTCCTTGCGGCCGAAGAAGGCAACTTG
ACGAGAATTTTCGCCCGGGGAAGCCCGCGTGGGAATTTACCGCTGCTACT
CCTTGCGGCCGAAGAAGGCAAC
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