mRNA_F-serratus_M_contig773.18986.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig773.18986.1
Unique NamemRNA_F-serratus_M_contig773.18986.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig773.18986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig773contigF-serratus_M_contig773:28648..29117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size470
Cds size333
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932309.106237-UTR-F-serratus_M_contig773:28647..287841622932309.106237-UTR-F-serratus_M_contig773:28647..28784Fucus serratus maleUTRF-serratus_M_contig773 28648..28784 +
1690964245.836773-UTR-F-serratus_M_contig773:28647..287841690964245.836773-UTR-F-serratus_M_contig773:28647..28784Fucus serratus maleUTRF-serratus_M_contig773 28648..28784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932309.1209676-CDS-F-serratus_M_contig773:28784..291171622932309.1209676-CDS-F-serratus_M_contig773:28784..29117Fucus serratus maleCDSF-serratus_M_contig773 28785..29117 +
1690964245.8480484-CDS-F-serratus_M_contig773:28784..291171690964245.8480484-CDS-F-serratus_M_contig773:28784..29117Fucus serratus maleCDSF-serratus_M_contig773 28785..29117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig773.18986.1prot_F-serratus_M_contig773.18986.1Fucus serratus malepolypeptideF-serratus_M_contig773 28785..29117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig773.18986.1

>prot_F-serratus_M_contig773.18986.1 ID=prot_F-serratus_M_contig773.18986.1|Name=mRNA_F-serratus_M_contig773.18986.1|organism=Fucus serratus male|type=polypeptide|length=111bp
MRVIILSCHSACRGSKIDCVFFSSDCSGTQHNTTYHTAVRSFVRSTVRKR
LRRGLRLCHDLTDSTLTNCTAATGSYNMHLILIQPLSTPLLSLSSLFSLK
MYCYLFTSYH*
back to top

mRNA from alignment at F-serratus_M_contig773:28648..29117+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig773.18986.1 ID=mRNA_F-serratus_M_contig773.18986.1|Name=mRNA_F-serratus_M_contig773.18986.1|organism=Fucus serratus male|type=mRNA|length=470bp|location=Sequence derived from alignment at F-serratus_M_contig773:28648..29117+ (Fucus serratus male)
ACATGAGTCACCATCCAGAGACAACAAAACAATGAAAGTAACGGGGTTAA
CTTGTGACCATGTAGGGACACTAAAACAAAAAAAGTACGCATGTACTAAT
ATGTATTTGGACTACAATAATATGGTAATAAAGGAGGATGAGAGTTATTA
TTTTGTCATGCCATTCTGCCTGCCGTGGAAGTAAAATTGACTGTGTTTTC
TTCTCGTCGGATTGCAGTGGCACACAACACAACACAACATACCACACGGC
CGTTCGTTCGTTCGTTCGTTCAACCGTCCGAAAAAGATTGAGGCGTGGGC
TCCGGCTATGCCACGACCTCACCGACTCTACCCTCACCAATTGCACAGCT
GCGACGGGAAGCTATAACATGCACCTCATATTAATACAACCCTTATCCAC
CCCTCTGCTCTCTCTCTCTTCCCTCTTCTCCCTCAAAATGTACTGTTATT
TATTTACTTCATACCACTAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig773:28648..29117+

>mRNA_F-serratus_M_contig773.18986.1 ID=mRNA_F-serratus_M_contig773.18986.1|Name=mRNA_F-serratus_M_contig773.18986.1|organism=Fucus serratus male|type=CDS|length=666bp|location=Sequence derived from alignment at F-serratus_M_contig773:28648..29117+ (Fucus serratus male)
ATGAGAGTTATTATTTTGTCATGCCATTCTGCCTGCCGTGGAAGTAAAAT
TGACTGTGTTTTCTTCTCGTCGGATTGCAGTGGCACACAACACAACACAA
CATACCACACGGCCGTTCGTTCGTTCGTTCGTTCAACCGTCCGAAAAAGA
TTGAGGCGTGGGCTCCGGCTATGCCACGACCTCACCGACTCTACCCTCAC
CAATTGCACAGCTGCGACGGGAAGCTATAACATGCACCTCATATTAATAC
AACCCTTATCCACCCCTCTGCTCTCTCTCTCTTCCCTCTTCTCCCTCAAA
ATGTACTGTTATTTATTTACTTCATACCACTAGATGAGAGTTATTATTTT
GTCATGCCATTCTGCCTGCCGTGGAAGTAAAATTGACTGTGTTTTCTTCT
CGTCGGATTGCAGTGGCACACAACACAACACAACATACCACACGGCCGTT
CGTTCGTTCGTTCGTTCAACCGTCCGAAAAAGATTGAGGCGTGGGCTCCG
GCTATGCCACGACCTCACCGACTCTACCCTCACCAATTGCACAGCTGCGA
CGGGAAGCTATAACATGCACCTCATATTAATACAACCCTTATCCACCCCT
CTGCTCTCTCTCTCTTCCCTCTTCTCCCTCAAAATGTACTGTTATTTATT
TACTTCATACCACTAG
back to top