mRNA_F-serratus_M_contig772.18976.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig772.18976.1
Unique NamemRNA_F-serratus_M_contig772.18976.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig772.18976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig772contigF-serratus_M_contig772:227965..229016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_004040.1
Exons3
Model size281
Cds size279
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig772.18976.1prot_F-serratus_M_contig772.18976.1Fucus serratus malepolypeptideF-serratus_M_contig772 227965..229016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932305.6955929-CDS-F-serratus_M_contig772:227964..2280161622932305.6955929-CDS-F-serratus_M_contig772:227964..228016Fucus serratus maleCDSF-serratus_M_contig772 227965..228016 -
1690964244.4224322-CDS-F-serratus_M_contig772:227964..2280161690964244.4224322-CDS-F-serratus_M_contig772:227964..228016Fucus serratus maleCDSF-serratus_M_contig772 227965..228016 -
1622932305.7152693-CDS-F-serratus_M_contig772:228282..2284281622932305.7152693-CDS-F-serratus_M_contig772:228282..228428Fucus serratus maleCDSF-serratus_M_contig772 228283..228428 -
1690964244.432238-CDS-F-serratus_M_contig772:228282..2284281690964244.432238-CDS-F-serratus_M_contig772:228282..228428Fucus serratus maleCDSF-serratus_M_contig772 228283..228428 -
1622932305.7332964-CDS-F-serratus_M_contig772:228935..2290161622932305.7332964-CDS-F-serratus_M_contig772:228935..229016Fucus serratus maleCDSF-serratus_M_contig772 228936..229016 -
1690964244.4412673-CDS-F-serratus_M_contig772:228935..2290161690964244.4412673-CDS-F-serratus_M_contig772:228935..229016Fucus serratus maleCDSF-serratus_M_contig772 228936..229016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig772.18976.1

>prot_F-serratus_M_contig772.18976.1 ID=prot_F-serratus_M_contig772.18976.1|Name=mRNA_F-serratus_M_contig772.18976.1|organism=Fucus serratus male|type=polypeptide|length=93bp
QRKKELHAAKLIQRWTRGILLRQRVLLDRRLRRIDIMDARFAIRDEVFSA
CFIEHGAGVVIQRWWRTLPWRLRHLRARYRYILSKRTSVIQV*
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mRNA from alignment at F-serratus_M_contig772:227965..229016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig772.18976.1 ID=mRNA_F-serratus_M_contig772.18976.1|Name=mRNA_F-serratus_M_contig772.18976.1|organism=Fucus serratus male|type=mRNA|length=1052bp|location=Sequence derived from alignment at F-serratus_M_contig772:227965..229016- (Fucus serratus male)
CAACGGAAGAAGGAGCTTCACGCGGCCAAACTGATTCAGCGATGGACGCG
TGGTATTCTGCTTAGACAGCGCGTCCTCCTGGCGAGTTCAACCCACTTGG
GAAAAAGGGACGTTTAATCACACTTATTGCGTTATTCCGCATTCGGCCCG
TGATTCCGAATTTGAACGGGAAAAAACAGCAGCCCTCTCTGCTGCGCAAA
CATGCTGTCCCTCCGGCCGTGTTTTGACTTCAGTTTCTATTGTAGTGTAG
TTGCACTTGAACTTCCCCTTGATCTCTGTAGATGACGACCAGGTTTCGGC
TCAGCGACCTCTATCTTACATGCTAGTTGCTCGCGTGTTTTCCCTTCTTT
TAGAGGATGCTTCATCAACGGGTTCATATGAAAGAAACGAGGATTCTCTG
GTCGCTGGAAGCCCAAAGTTAATGACACGATCGAACGAACAGCATCCCTG
ACTCCGTATCCTATACAGGAAGCCTTGTGTCCTGTAGCTTAGCCAACAAA
AACCAAACCATACATTTATTTCGCCTCCCTCCCTTTTATTTGTGTGATTG
GATGCTTGGAATCCAATTCGTGGCGTTGAGGGTTCCAGGATCGACGGCTT
CGTAGGATAGATATAATGGATGCCCGCTTCGCTATTCGCGATGAGGTTTT
CTCGGCGTGTTTTATAGAGCACGGGGCAGGGGTCGTCATCCAAAGGTGGT
GGCGCACGCTACCATGGAGACTGAGGCACTTGAGGTGAGCGAGTGAGTAG
TACAAGGGTTCCCGACCACTCCTACTTTCATAATATAGAATCCTCCAGAG
TTTGAGGGTAGAGAAGATGGGGTAGGTACGCATTTCTCGTCCTGGAAACG
ACTTTCTTATGGTATTGCAAGAAAGCTCGATTGTTGGTCTGCTCGGCTCT
CCCTAGTCAAAACACTGTTGTTGTGATTCAATCCGTCTTTTTACTCCTAC
CAACAAATAAACTCTGGCCGCCGTGTTTCGCTCGCTGATGGTTACCTCAG
GGCTAGGTATAGATATATTTTGAGCAAGCGGACGTCAGTTATTCAGGTAT
GA
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Coding sequence (CDS) from alignment at F-serratus_M_contig772:227965..229016-

>mRNA_F-serratus_M_contig772.18976.1 ID=mRNA_F-serratus_M_contig772.18976.1|Name=mRNA_F-serratus_M_contig772.18976.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig772:227965..229016- (Fucus serratus male)
CAACGGAAGAAGGAGCTTCACGCGGCCAAACTGATTCAGCGATGGACGCG
TGGTATTCTGCTTAGACAGCGCGTCCTCCTGCAACGGAAGAAGGAGCTTC
ACGCGGCCAAACTGATTCAGCGATGGACGCGTGGTATTCTGCTTAGACAG
CGCGTCCTCCTGGATCGACGGCTTCGTAGGATAGATATAATGGATGCCCG
CTTCGCTATTCGCGATGAGGTTTTCTCGGCGTGTTTTATAGAGCACGGGG
CAGGGGTCGTCATCCAAAGGTGGTGGCGCACGCTACCATGGAGACTGAGG
CACTTGAGGATCGACGGCTTCGTAGGATAGATATAATGGATGCCCGCTTC
GCTATTCGCGATGAGGTTTTCTCGGCGTGTTTTATAGAGCACGGGGCAGG
GGTCGTCATCCAAAGGTGGTGGCGCACGCTACCATGGAGACTGAGGCACT
TGAGGGCTAGGTATAGATATATTTTGAGCAAGCGGACGTCAGTTATTCAG
GTATGAGGCTAGGTATAGATATATTTTGAGCAAGCGGACGTCAGTTATTC
AGGTATGA
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