mRNA_F-serratus_M_contig7707.18963.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7707.18963.1
Unique NamemRNA_F-serratus_M_contig7707.18963.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7707.18963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7707contigF-serratus_M_contig7707:10315..11317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932304.8278716-CDS-F-serratus_M_contig7707:10314..104321622932304.8278716-CDS-F-serratus_M_contig7707:10314..10432Fucus serratus maleCDSF-serratus_M_contig7707 10315..10432 -
1690964244.0597422-CDS-F-serratus_M_contig7707:10314..104321690964244.0597422-CDS-F-serratus_M_contig7707:10314..10432Fucus serratus maleCDSF-serratus_M_contig7707 10315..10432 -
1622932304.8517892-CDS-F-serratus_M_contig7707:11195..113171622932304.8517892-CDS-F-serratus_M_contig7707:11195..11317Fucus serratus maleCDSF-serratus_M_contig7707 11196..11317 -
1690964244.0683975-CDS-F-serratus_M_contig7707:11195..113171690964244.0683975-CDS-F-serratus_M_contig7707:11195..11317Fucus serratus maleCDSF-serratus_M_contig7707 11196..11317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7707.18963.1prot_F-serratus_M_contig7707.18963.1Fucus serratus malepolypeptideF-serratus_M_contig7707 10315..11317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7707.18963.1

>prot_F-serratus_M_contig7707.18963.1 ID=prot_F-serratus_M_contig7707.18963.1|Name=mRNA_F-serratus_M_contig7707.18963.1|organism=Fucus serratus male|type=polypeptide|length=80bp
TAGGKGRSVTLSVSTYGGNRVITSVNTTTLGSSCSRRDCHTVNHVQRNRT
QLAGAGGVDVKPTTVKGCRHALAGFSFLRE
back to top

mRNA from alignment at F-serratus_M_contig7707:10315..11317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7707.18963.1 ID=mRNA_F-serratus_M_contig7707.18963.1|Name=mRNA_F-serratus_M_contig7707.18963.1|organism=Fucus serratus male|type=mRNA|length=1003bp|location=Sequence derived from alignment at F-serratus_M_contig7707:10315..11317- (Fucus serratus male)
ACGGCAGGTGGTAAAGGTAGAAGCGTCACCCTCTCAGTGAGCACGTACGG
CGGAAACAGAGTGATAACTTCGGTGAACACGACGACGTTGGGTAGCAGCT
GCTCGCGACGAGACTGTCACACGTAAGTTACCCTGCCGTACGTAAGAGCT
TTGCCGTAGAGTTCCACCCATTGAGAGCTTCGGTGTCCAATTTTTGTCCA
TGCACGTAGTGTCCATGGGTTAGACATGGGCCGCCGTAATAACGCCGCCG
ATATAAACTGTGAACTTGTCCTTCTGGCGCCCGCAACCGATTGCGTATTT
GTGCTGTGGTGTACTTTACCGTGGTGTATTGACTGAAAAACAATTATTGC
GACCCGGGTGTTGTTCCGATAATCCGCATGTCTTGAATATGTACTCTTTG
GCTGCGTTTGGGGTTTGCCGTCCGACCATCTGGCGTGAAAGTGATCGACG
GTACGCCGTGCTGTTGTTGTTGCTTGGGAACCCTAAAAAAACTACATACG
GGTCCGATACGGCTTGCTATATTTCTCATCGATCGTGCGTCATGTGCACA
ACACCAGCGCCAACAGTAGTAGCAATAGTGTTTTATGTCTGTCTTCTGTT
GTGGAGGTACCTTCTCCAAGCGTTAGCCACAGCACCCTCAAACGTGTACT
TCTGTACGGTTGTGGTCGCGGTGCAGTCTTGGACTATCCCCGCCAGAGAT
TCAGGCACGAGAGTTTGGAATTGTTTGAAATTGGGAAGTTCAAACCACAC
GCGTTAAGCTTGATGGGAAAGCACCTTGTTGGGCGTGCACCTATATGCAC
TGCTGCTGTCGCTGTCACTCGACGCGAGTCGGTATTTACGTTGGTGTATG
AACGCGTCAGTCTTCCTCCCTGTTTTGTTGTGCAGGGTAAACCACGTACA
GCGAAACCGGACCCAGTTGGCAGGAGCTGGAGGCGTGGACGTCAAGCCGA
CCACCGTCAAGGGGTGCAGACACGCTCTGGCGGGGTTTTCATTCCTTCGT
GAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig7707:10315..11317-

>mRNA_F-serratus_M_contig7707.18963.1 ID=mRNA_F-serratus_M_contig7707.18963.1|Name=mRNA_F-serratus_M_contig7707.18963.1|organism=Fucus serratus male|type=CDS|length=480bp|location=Sequence derived from alignment at F-serratus_M_contig7707:10315..11317- (Fucus serratus male)
ACGGCAGGTGGTAAAGGTAGAAGCGTCACCCTCTCAGTGAGCACGTACGG
CGGAAACAGAGTGATAACTTCGGTGAACACGACGACGTTGGGTAGCAGCT
GCTCGCGACGAGACTGTCACACACGGCAGGTGGTAAAGGTAGAAGCGTCA
CCCTCTCAGTGAGCACGTACGGCGGAAACAGAGTGATAACTTCGGTGAAC
ACGACGACGTTGGGTAGCAGCTGCTCGCGACGAGACTGTCACACGGTAAA
CCACGTACAGCGAAACCGGACCCAGTTGGCAGGAGCTGGAGGCGTGGACG
TCAAGCCGACCACCGTCAAGGGGTGCAGACACGCTCTGGCGGGGTTTTCA
TTCCTTCGTGAGGGTAAACCACGTACAGCGAAACCGGACCCAGTTGGCAG
GAGCTGGAGGCGTGGACGTCAAGCCGACCACCGTCAAGGGGTGCAGACAC
GCTCTGGCGGGGTTTTCATTCCTTCGTGAG
back to top