mRNA_F-serratus_M_contig770.18960.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig770.18960.1
Unique NamemRNA_F-serratus_M_contig770.18960.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig770.18960.1 vs. uniprot
Match: A0A6H5KUW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW2_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.740e-13
Identity = 44/102 (43.14%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:  448 RLNRRAWKEVKLTEGE---TKAFVPEGLIGPTPATATAGERGAK--------KAPAAVSQEKRDEIYANLVDMGFDAIACDRAFKEVGYDLDPVLTSLLNQS 720
            R  ++ W +     G+    KA VP  L+GPTPA +                K PAA+S EKRD++YA LVDMGF    CD+AFKEVGY++DPVL  L + +
Sbjct: 1746 RPKKKPWGDATAAAGDGGAKKATVPANLMGPTPAASXXXXXXXXXXXXXXXXKVPAALSAEKRDQLYAQLVDMGFAIADCDKAFKEVGYEIDPVLNWLFSNA 1847
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig770.18960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUW2_9PHAE4.740e-1343.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig770contigF-serratus_M_contig770:304323..305673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size870
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig770.18960.1prot_F-serratus_M_contig770.18960.1Fucus serratus malepolypeptideF-serratus_M_contig770 304333..304800 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932303.8909307-UTR-F-serratus_M_contig770:304322..3043321622932303.8909307-UTR-F-serratus_M_contig770:304322..304332Fucus serratus maleUTRF-serratus_M_contig770 304323..304332 +
1690964243.6868546-UTR-F-serratus_M_contig770:304322..3043321690964243.6868546-UTR-F-serratus_M_contig770:304322..304332Fucus serratus maleUTRF-serratus_M_contig770 304323..304332 +
1622932303.9978292-UTR-F-serratus_M_contig770:304800..3049561622932303.9978292-UTR-F-serratus_M_contig770:304800..304956Fucus serratus maleUTRF-serratus_M_contig770 304801..304956 +
1690964243.7143085-UTR-F-serratus_M_contig770:304800..3049561690964243.7143085-UTR-F-serratus_M_contig770:304800..304956Fucus serratus maleUTRF-serratus_M_contig770 304801..304956 +
1622932304.0166829-UTR-F-serratus_M_contig770:305437..3056731622932304.0166829-UTR-F-serratus_M_contig770:305437..305673Fucus serratus maleUTRF-serratus_M_contig770 305438..305673 +
1690964243.7258577-UTR-F-serratus_M_contig770:305437..3056731690964243.7258577-UTR-F-serratus_M_contig770:305437..305673Fucus serratus maleUTRF-serratus_M_contig770 305438..305673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932303.9718182-CDS-F-serratus_M_contig770:304332..3048001622932303.9718182-CDS-F-serratus_M_contig770:304332..304800Fucus serratus maleCDSF-serratus_M_contig770 304333..304800 +
1690964243.7011712-CDS-F-serratus_M_contig770:304332..3048001690964243.7011712-CDS-F-serratus_M_contig770:304332..304800Fucus serratus maleCDSF-serratus_M_contig770 304333..304800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig770.18960.1

>prot_F-serratus_M_contig770.18960.1 ID=prot_F-serratus_M_contig770.18960.1|Name=mRNA_F-serratus_M_contig770.18960.1|organism=Fucus serratus male|type=polypeptide|length=156bp
MARRLLPVPLRRLPVGARRMARRLPPVPLRSVPTGVRRMAWRLPLLAEAR
RMARQRTLQAWRRKRTLMPREMWGMVKPGTGEETTSFSPTRRPATGENGK
REGTAPMRSLLKPADGVETVRLPSREEEDGARRTEELRRRRLQRKLDSIV
GLGRK*
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mRNA from alignment at F-serratus_M_contig770:304323..305673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig770.18960.1 ID=mRNA_F-serratus_M_contig770.18960.1|Name=mRNA_F-serratus_M_contig770.18960.1|organism=Fucus serratus male|type=mRNA|length=1351bp|location=Sequence derived from alignment at F-serratus_M_contig770:304323..305673+ (Fucus serratus male)
GGCCAGGAGGATGGCGCGGCGGCTGCTCCCCGTGCCGCTACGAAGACTTC
CGGTTGGGGCCAGGAGGATGGCGCGGCGACTGCCCCCCGTGCCGCTACGA
AGTGTTCCGACTGGGGTCAGGAGGATGGCGTGGCGGCTTCCTCTTCTGGC
TGAGGCCAGGAGGATGGCGCGGCAGCGAACTCTTCAGGCTTGGAGGAGAA
AGAGGACACTGATGCCGAGAGAGATGTGGGGCATGGTGAAGCCTGGTACC
GGGGAGGAGACGACCAGTTTTTCGCCAACGAGGCGTCCGGCGACTGGGGA
AAACGGGAAGAGGGAGGGGACGGCGCCGATGCGGTCCCTCTTGAAACCGG
CGGATGGGGTGGAGACGGTGAGATTACCGAGCAGGGAGGAGGAGGATGGG
GCGCGACGGACGGAGGAGCTGCGGCGGCGTCGGCTACAGAGGAAGCTAGA
CTCAATCGTAGGGCTTGGAAGGAAGTAAAACTTACTGAGGGAGAGACTAA
GGCTTTTGTGCCGGAGGGTTTGATCGGGCCCACCCCGGCGACGGCGACCG
CTGGAGAGCGCGGGGCCAAGAAAGCTCCTGCTGCTGTATCTCAGGAGAAA
CGGGACGAAATCTACGCGAATCTTGTCGACATGGGTGAGTTTTGCTTGTT
TGGTGGTTGGCGTCCCCTTCCTTTTTTTTGGTTGGCAAAAGACCCATTTC
TCGGTTATGTGTGGACTCTTTCGGGGAGGTTCAGTCTGTGCACATCTGTG
CACATGTATATTTTTTTATCAGGTTCTTGAGTGTTTTTTTTTCTCTCACT
TCTTTTCATGCCGTTAATGTCCTGCCCGTAGGAGGATGAGAGCGTCATTT
ACCGAATGAAAAGTTGTAATTACTCGACTATTTCGATATTCTCGCGTAAT
ATGGCACTTTCCCGTGTTGATAGGTTTTCCACGAAAGAGGCGTACGACGC
GATACCTCGCCTCCCCCCCCATCCGGTATCCAGTCCCCAAAAAGACACGA
GATAGCTCTCGCGGTCATGGTTCTAGCTGTTCCGAGTCTTGTACCTTTAC
TTTTTTTTCTGTGGCACCTCGCGTTACGTCCCCTCGACCTCTCATTGACC
TCTCTCTCCTCCCAGGCTTCGATGCGATCGCCTGCGACCGCGCCTTCAAG
GAGGTGGGATACGATTTGGATCCGGTGCTGACCTCGCTTCTCAACCAGTC
GTGAAGGTGTCTCTCCTCCGCCGGAGCAAGGACAGCAGAGCAGAGCAGAG
CAGACAAGCATTCTTCCTCGGAGTCGACAATCTCCTGTCAGTTCGCTAGT
CTCATAGAGTGCTGTATACACATTTACAATTTAAAATTGGGATAAAGTGG
C
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Coding sequence (CDS) from alignment at F-serratus_M_contig770:304323..305673+

>mRNA_F-serratus_M_contig770.18960.1 ID=mRNA_F-serratus_M_contig770.18960.1|Name=mRNA_F-serratus_M_contig770.18960.1|organism=Fucus serratus male|type=CDS|length=936bp|location=Sequence derived from alignment at F-serratus_M_contig770:304323..305673+ (Fucus serratus male)
ATGGCGCGGCGGCTGCTCCCCGTGCCGCTACGAAGACTTCCGGTTGGGGC
CAGGAGGATGGCGCGGCGACTGCCCCCCGTGCCGCTACGAAGTGTTCCGA
CTGGGGTCAGGAGGATGGCGTGGCGGCTTCCTCTTCTGGCTGAGGCCAGG
AGGATGGCGCGGCAGCGAACTCTTCAGGCTTGGAGGAGAAAGAGGACACT
GATGCCGAGAGAGATGTGGGGCATGGTGAAGCCTGGTACCGGGGAGGAGA
CGACCAGTTTTTCGCCAACGAGGCGTCCGGCGACTGGGGAAAACGGGAAG
AGGGAGGGGACGGCGCCGATGCGGTCCCTCTTGAAACCGGCGGATGGGGT
GGAGACGGTGAGATTACCGAGCAGGGAGGAGGAGGATGGGGCGCGACGGA
CGGAGGAGCTGCGGCGGCGTCGGCTACAGAGGAAGCTAGACTCAATCGTA
GGGCTTGGAAGGAAGTAAATGGCGCGGCGGCTGCTCCCCGTGCCGCTACG
AAGACTTCCGGTTGGGGCCAGGAGGATGGCGCGGCGACTGCCCCCCGTGC
CGCTACGAAGTGTTCCGACTGGGGTCAGGAGGATGGCGTGGCGGCTTCCT
CTTCTGGCTGAGGCCAGGAGGATGGCGCGGCAGCGAACTCTTCAGGCTTG
GAGGAGAAAGAGGACACTGATGCCGAGAGAGATGTGGGGCATGGTGAAGC
CTGGTACCGGGGAGGAGACGACCAGTTTTTCGCCAACGAGGCGTCCGGCG
ACTGGGGAAAACGGGAAGAGGGAGGGGACGGCGCCGATGCGGTCCCTCTT
GAAACCGGCGGATGGGGTGGAGACGGTGAGATTACCGAGCAGGGAGGAGG
AGGATGGGGCGCGACGGACGGAGGAGCTGCGGCGGCGTCGGCTACAGAGG
AAGCTAGACTCAATCGTAGGGCTTGGAAGGAAGTAA
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