mRNA_F-serratus_M_contig77.18957.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig77.18957.1
Unique NamemRNA_F-serratus_M_contig77.18957.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig77.18957.1 vs. uniprot
Match: A0A6H5L4Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q8_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.620e-34
Identity = 63/104 (60.58%), Postives = 79/104 (75.96%), Query Frame = 1
Query:    1 HLGIVDDKDKAGYFTGMLSSAFMVGRFVTSYFWGWFADRYGRRIVILIGLWTTVVLSIAFGVSRAFWWAFLSRFLIGALNGIITVSKTLVSEVCGKEHEIVGMG 312
            HLG+ DDKD+AGY+ G L+SAFMVGRF         ADRYGR  V+ IGL +  VLS+AFG+S AFWWA   RFL+GA+NG+I +SK ++SE+CGK+HE VGMG
Sbjct:   69 HLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHEKVGMG 172          
BLAST of mRNA_F-serratus_M_contig77.18957.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 2.600e-34
Identity = 63/104 (60.58%), Postives = 79/104 (75.96%), Query Frame = 1
Query:    1 HLGIVDDKDKAGYFTGMLSSAFMVGRFVTSYFWGWFADRYGRRIVILIGLWTTVVLSIAFGVSRAFWWAFLSRFLIGALNGIITVSKTLVSEVCGKEHEIVGMG 312
            HLG+ DDKD+AGY+ G L+SAFMVGRF         ADRYGR  V+ IGL +  VLS+AFG+S AFWWA   RFL+GA+NG+I +SK ++SE+CGK+HE VGMG
Sbjct:   37 HLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHETVGMG 140          
BLAST of mRNA_F-serratus_M_contig77.18957.1 vs. uniprot
Match: D8LRH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 3.290e-34
Identity = 65/103 (63.11%), Postives = 79/103 (76.70%), Query Frame = 1
Query:    1 HLGIVDDKDKAGYFTGMLSSAFMVGRFVTSYFWGWFADRYGRRIVILIGLWTTVVLSIAFGVSRAFWWAFLSRFLIGALNGIITVSKTLVSEVCGKEHEIVGM 309
            HLG+ DDKD+AGY+ G +SSAFMVGR  +SYFWG FAD +GR  VI  GL + VVLSIAFG+S +F WA   RFL+G LNG++ +SK + SEVCGKEHE  GM
Sbjct:   58 HLGVTDDKDEAGYYAGYVSSAFMVGRVGSSYFWGRFADSHGRLPVIYAGLTSMVVLSIAFGLSTSFLWALGCRFLLGVLNGLLGISKAMTSEVCGKEHEATGM 160          
BLAST of mRNA_F-serratus_M_contig77.18957.1 vs. uniprot
Match: A0A6H5KX19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 4.860e-34
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 1
Query:    1 HLGIVDDKDKAGYFTGMLSSAFMVGRFVTSYFWGWFADRYGRRIVILIGLWTTVVLSIAFGVSRAFWWAFLSRFLIGALNGIITVSKTLVSEVCGKEHEIVGMG 312
            HLG+ DD+D+AGY+ G L+SAFMVGRF TS      ADRYGR  V+ IGL +  VLS+AFG+S AFWWA   RFL+GA+N ++ +SK ++SE+CGK+HE VGMG
Sbjct:  105 HLGVTDDRDEAGYYAGCLASAFMVGRFATSXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNALMGISKCMISEICGKQHETVGMG 208          
BLAST of mRNA_F-serratus_M_contig77.18957.1 vs. uniprot
Match: D8LFV5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV5_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.120e-31
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 1
Query:   31 AGYFTGMLSSAFMVGRFVTSYFWGWFADRYGRRIVILIGLWTTVVLSIAFGVSRAFWWAFLSRFLIGALNGIITVSKTLVSEVCGKEHEIVGMGA 315
            +GYF G+LSS+FM GR +++YFWG  ADR GRR V+L+ L +T  L++AFG S  F WA   RFL+G LNG+  +  TLVSE+CGKEHE+VG+GA
Sbjct:    3 SGYFAGLLSSSFMFGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACRFLLGLLNGMTVIFPTLVSEICGKEHEVVGLGA 97          
BLAST of mRNA_F-serratus_M_contig77.18957.1 vs. uniprot
Match: A0A6H5JZQ3_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ3_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 7.000e-29
Identity = 55/95 (57.89%), Postives = 73/95 (76.84%), Query Frame = 1
Query:   31 AGYFTGMLSSAFMVGRFVTSYFWGWFADRYGRRIVILIGLWTTVVLSIAFGVSRAFWWAFLSRFLIGALNGIITVSKTLVSEVCGKEHEIVGMGA 315
            +GYF G+LSS+FMVGR +++YFWG  ADR GRR V+L+ L +T  L++AFG S  F WA   RFL+G LNG+  +  +LVSE+CGKEHE+VG+GA
Sbjct:    3 SGYFAGLLSSSFMVGRVISAYFWGIIADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACRFLLGLLNGMTVIFPSLVSEICGKEHEVVGLGA 97          
BLAST of mRNA_F-serratus_M_contig77.18957.1 vs. uniprot
Match: A0A7R9UB92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB92_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.250e-26
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    4 LGIVDDKDKAGYFTGMLSSAFMVGRFVTSYFWGWFADRYGRRIVILIGLWTTVVLSIAFGVSRAFWWAFLSRFLIGALNGIITVSKTLVSEVCGKEHEIVGMG 312
            +G  DD DKAGY+ G + +AFM GR V+S+FWG +ADRYGR+ VILIG  +  VLS+ FGVS  F  A ++RFLIG  NGI   SKT+V+E+C ++ +   MG
Sbjct:   59 IGATDDVDKAGYYAGFVGAAFMAGRTVSSFFWGIYADRYGRKPVILIGCASIAVLSVLFGVSTTFSMALVTRFLIGLGNGIAGTSKTIVAELCSEDFQPRAMG 161          
BLAST of mRNA_F-serratus_M_contig77.18957.1 vs. uniprot
Match: A0A835Z5M2_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.870e-24
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   34 GYFTGMLSSAFMVGRFVTSYFWGWFADRYGRRIVILIGLWTTVVLSIAFGVSRAFWWAFLSRFLIGALNGIITVSKTLVSEVCGKEHEIVGMG 312
            GY+ G ++ AFM+GRF +SY WG F+D+YGR+  +LIG  +  V S+ FG+S   W A L R L+GALNG ++  K  VSE+CGK HE+ GMG
Sbjct:    4 GYYAGFIAGAFMLGRFASSYPWGRFSDKYGRKPALLIGAASVCVFSLGFGLSTELWVAVLMRLLLGALNGTVSTCKVCVSEICGKAHEVKGMG 96          
BLAST of mRNA_F-serratus_M_contig77.18957.1 vs. uniprot
Match: A0A7J7N9H9_9MAGN (MFS domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7N9H9_9MAGN)

HSP 1 Score: 104 bits (260), Expect = 5.840e-24
Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:   10 IVDDKDKAGYFTGMLSSAFMVGRFVTSYFWGWFADRYGRRIVILIGLWTTVVLSIAFGVSRAFWWAFLSRFLIGALNGIITVSKTLVSEVCGKEHEIVGM 309
            I   ++  GY+ G + S+FM GRF+TSYFWG  ADRYGR+ V++ G +T VV +  FG+S  +W A  +RFL+G+LNG++   K   SE+C +EH+ +GM
Sbjct:  813 IAKREEDIGYYAGYVGSSFMFGRFLTSYFWGVVADRYGRKPVVMFGTFTVVVFNTLFGLSTNYWMALCTRFLLGSLNGLLGPIKAYASEICREEHQALGM 912          
BLAST of mRNA_F-serratus_M_contig77.18957.1 vs. uniprot
Match: A0A812N2C8_9DINO (ZIFL2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812N2C8_9DINO)

HSP 1 Score: 103 bits (258), Expect = 9.300e-24
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 1
Query:    4 LGIVDDKDKAGYFTGMLSSAFMVGRFVTSYFWGWFADRYGRRIVILIGLWTTVVLSIAFGVSRAFWWAFLSRFLIGALNGIITVSKTLVSEVCGKEHEIVGM 309
            L +  DK + GY+ G + +AFM GR  TSY WGWF+DRYGR+ V++IG+   VV SI FG S  F WA   RF+ G  NGI+   KT+VSE+C  + +  GM
Sbjct:   22 LDLTHDKRELGYYAGYIGAAFMAGRLCTSYGWGWFSDRYGRKPVMVIGITAMVVFSIGFGCSFNFAWALAMRFMTGFWNGIVGTGKTMVSEICTDKQQPRGM 123          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig77.18957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Q8_9PHAE1.620e-3460.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRH7_ECTSI2.600e-3460.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRH9_ECTSI3.290e-3463.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX19_9PHAE4.860e-3459.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFV5_ECTSI1.120e-3157.89MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JZQ3_9PHAE7.000e-2957.89MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R9UB92_9STRA1.250e-2653.40Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A835Z5M2_9STRA2.870e-2451.61Major facilitator superfamily domain-containing pr... [more]
A0A7J7N9H9_9MAGN5.840e-2447.00MFS domain-containing protein n=1 Tax=Kingdonia un... [more]
A0A812N2C8_9DINO9.300e-2449.02ZIFL2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig77contigF-serratus_M_contig77:702485..703338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue5.2e-29
Seed eggNOG ortholog2880.D8LRH7
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size319
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig77.18957.1prot_F-serratus_M_contig77.18957.1Fucus serratus malepolypeptideF-serratus_M_contig77 702487..703338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932303.6188912-CDS-F-serratus_M_contig77:702486..7025831622932303.6188912-CDS-F-serratus_M_contig77:702486..702583Fucus serratus maleCDSF-serratus_M_contig77 702487..702583 -
1690964243.5887737-CDS-F-serratus_M_contig77:702486..7025831690964243.5887737-CDS-F-serratus_M_contig77:702486..702583Fucus serratus maleCDSF-serratus_M_contig77 702487..702583 -
1622932303.6412003-CDS-F-serratus_M_contig77:702726..7029101622932303.6412003-CDS-F-serratus_M_contig77:702726..702910Fucus serratus maleCDSF-serratus_M_contig77 702727..702910 -
1690964243.6057417-CDS-F-serratus_M_contig77:702726..7029101690964243.6057417-CDS-F-serratus_M_contig77:702726..702910Fucus serratus maleCDSF-serratus_M_contig77 702727..702910 -
1622932303.6652024-CDS-F-serratus_M_contig77:703304..7033381622932303.6652024-CDS-F-serratus_M_contig77:703304..703338Fucus serratus maleCDSF-serratus_M_contig77 703305..703338 -
1690964243.6190357-CDS-F-serratus_M_contig77:703304..7033381690964243.6190357-CDS-F-serratus_M_contig77:703304..703338Fucus serratus maleCDSF-serratus_M_contig77 703305..703338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig77.18957.1

>prot_F-serratus_M_contig77.18957.1 ID=prot_F-serratus_M_contig77.18957.1|Name=mRNA_F-serratus_M_contig77.18957.1|organism=Fucus serratus male|type=polypeptide|length=105bp
HLGIVDDKDKAGYFTGMLSSAFMVGRFVTSYFWGWFADRYGRRIVILIGL
WTTVVLSIAFGVSRAFWWAFLSRFLIGALNGIITVSKTLVSEVCGKEHEI
VGMGA
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mRNA from alignment at F-serratus_M_contig77:702485..703338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig77.18957.1 ID=mRNA_F-serratus_M_contig77.18957.1|Name=mRNA_F-serratus_M_contig77.18957.1|organism=Fucus serratus male|type=mRNA|length=854bp|location=Sequence derived from alignment at F-serratus_M_contig77:702485..703338- (Fucus serratus male)
CACTTGGGCATCGTGGACGACAAGGATAAGGCTGGTAAGATAAGTACTAC GCTTCCCAACCAACGACGGGCATGAGAACTCGGCGATTTGTTGAGTAAAG CTACATATATGCAGATTTTGTCGTCATGGGAGAAATATTCTTCGCCAATA AGTAGCGATTGCTTTTGTTTTCATTTTTTTGTTAGGTCATCGACTTGATA TTGAGCTTGCGGTTGTCAGAGTAAACTATTCGAGGGATGGAGTCTCGAGG GCGCAAAAACTAGAATTCAGAAGTGTGTGGCTAAAACCAGCGAAATATTT TCTAAGACCACATGCGATAGGATGCAGGTTCGGGCGTTTTTTTTTAGTAT GCATACACCTATTCCTCCCGCTCAGTTCTCGACAAACAACACGCAAAAAC AATCGCCGTTGCGTTTAATACCGTCCAGGATATTTCACCGGGATGTTGTC ATCGGCTTTCATGGTTGGTCGGTTCGTGACGTCTTATTTCTGGGGGTGGT TCGCCGATCGGTACGGTCGTCGCATCGTCATTTTAATCGGATTATGGACA ACTGTCGTGCTGTCCATAGCGTTCGGAGTTTCCCGGGCTTTCTGGTGGGC ATTTCTCTCTAGGTGAGGGATTTAATAAAACTTGCTGTCACAGGCAGGTT TGACTTTCTTTCCCGTATATATTTAGTTTCGGTGACCAAACTAATCGACT CATTTTCGTTCGGTGCGTGTTCTGTTGTCGAATGCTTCCGTGGCGACATC AAAAGGTTCTTGATCGGCGCACTTAATGGGATTATCACCGTGTCGAAAAC ATTAGTGTCTGAAGTTTGCGGCAAGGAACACGAGATCGTCGGAATGGGTG CTCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig77:702485..703338-

>mRNA_F-serratus_M_contig77.18957.1 ID=mRNA_F-serratus_M_contig77.18957.1|Name=mRNA_F-serratus_M_contig77.18957.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig77:702485..703338- (Fucus serratus male)
CACTTGGGCATCGTGGACGACAAGGATAAGGCTGCACTTGGGCATCGTGG
ACGACAAGGATAAGGCTGGATATTTCACCGGGATGTTGTCATCGGCTTTC
ATGGTTGGTCGGTTCGTGACGTCTTATTTCTGGGGGTGGTTCGCCGATCG
GTACGGTCGTCGCATCGTCATTTTAATCGGATTATGGACAACTGTCGTGC
TGTCCATAGCGTTCGGAGTTTCCCGGGCTTTCTGGTGGGCATTTCTCTCT
AGGATATTTCACCGGGATGTTGTCATCGGCTTTCATGGTTGGTCGGTTCG
TGACGTCTTATTTCTGGGGGTGGTTCGCCGATCGGTACGGTCGTCGCATC
GTCATTTTAATCGGATTATGGACAACTGTCGTGCTGTCCATAGCGTTCGG
AGTTTCCCGGGCTTTCTGGTGGGCATTTCTCTCTAGGTTCTTGATCGGCG
CACTTAATGGGATTATCACCGTGTCGAAAACATTAGTGTCTGAAGTTTGC
GGCAAGGAACACGAGATCGTCGGAATGGGTGCTGTTCTTGATCGGCGCAC
TTAATGGGATTATCACCGTGTCGAAAACATTAGTGTCTGAAGTTTGCGGC
AAGGAACACGAGATCGTCGGAATGGGTGCT
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