mRNA_F-serratus_M_contig77.18949.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig77.18949.1
Unique NamemRNA_F-serratus_M_contig77.18949.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig77.18949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig77contigF-serratus_M_contig77:103886..104242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932302.5303078-CDS-F-serratus_M_contig77:103885..1039451622932302.5303078-CDS-F-serratus_M_contig77:103885..103945Fucus serratus maleCDSF-serratus_M_contig77 103886..103945 -
1690964243.0093699-CDS-F-serratus_M_contig77:103885..1039451690964243.0093699-CDS-F-serratus_M_contig77:103885..103945Fucus serratus maleCDSF-serratus_M_contig77 103886..103945 -
1622932302.5497067-CDS-F-serratus_M_contig77:104089..1042421622932302.5497067-CDS-F-serratus_M_contig77:104089..104242Fucus serratus maleCDSF-serratus_M_contig77 104090..104242 -
1690964243.0252974-CDS-F-serratus_M_contig77:104089..1042421690964243.0252974-CDS-F-serratus_M_contig77:104089..104242Fucus serratus maleCDSF-serratus_M_contig77 104090..104242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig77.18949.1prot_F-serratus_M_contig77.18949.1Fucus serratus malepolypeptideF-serratus_M_contig77 103886..104242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig77.18949.1

>prot_F-serratus_M_contig77.18949.1 ID=prot_F-serratus_M_contig77.18949.1|Name=mRNA_F-serratus_M_contig77.18949.1|organism=Fucus serratus male|type=polypeptide|length=71bp
VDRVFDEHIQRQRECLREDPKRRIKVRKNHIYFIRNADKLYELMDTPFGL
KPGEGRGENLTEMEVAVNLLR
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mRNA from alignment at F-serratus_M_contig77:103886..104242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig77.18949.1 ID=mRNA_F-serratus_M_contig77.18949.1|Name=mRNA_F-serratus_M_contig77.18949.1|organism=Fucus serratus male|type=mRNA|length=357bp|location=Sequence derived from alignment at F-serratus_M_contig77:103886..104242- (Fucus serratus male)
GTAGACCGTGTATTTGACGAACACATTCAGCGCCAAAGGGAGTGTTTACG
TGAGGATCCGAAACGGCGGATCAAAGTGCGGAAGAACCACATATACTTCA
TCCGGAATGCGGATAAACTTTACGAGCTCATGGACACGCCGTTCGGATTG
AAGGTGAGAAGCATGCTGTACATTCTAGTCAGCTGGTGTGTGTAGGTTGA
CCACTGTTTTTTTCACAACGTAGAGCGAGGCGTATTTATCGGCATAAACT
TAAATCTCGCTGCCGTTCGTCTGTGTGATCCGTCGTTGCTTCGCGAGCCG
GGGGAAGGGCGTGGGGAAAACCTGACTGAGATGGAAGTAGCGGTAAACCT
CCTTCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig77:103886..104242-

>mRNA_F-serratus_M_contig77.18949.1 ID=mRNA_F-serratus_M_contig77.18949.1|Name=mRNA_F-serratus_M_contig77.18949.1|organism=Fucus serratus male|type=CDS|length=426bp|location=Sequence derived from alignment at F-serratus_M_contig77:103886..104242- (Fucus serratus male)
GTAGACCGTGTATTTGACGAACACATTCAGCGCCAAAGGGAGTGTTTACG
TGAGGATCCGAAACGGCGGATCAAAGTGCGGAAGAACCACATATACTTCA
TCCGGAATGCGGATAAACTTTACGAGCTCATGGACACGCCGTTCGGATTG
AAGGTAGACCGTGTATTTGACGAACACATTCAGCGCCAAAGGGAGTGTTT
ACGTGAGGATCCGAAACGGCGGATCAAAGTGCGGAAGAACCACATATACT
TCATCCGGAATGCGGATAAACTTTACGAGCTCATGGACACGCCGTTCGGA
TTGAAGCCGGGGGAAGGGCGTGGGGAAAACCTGACTGAGATGGAAGTAGC
GGTAAACCTCCTTCGGCCGGGGGAAGGGCGTGGGGAAAACCTGACTGAGA
TGGAAGTAGCGGTAAACCTCCTTCGG
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