mRNA_F-serratus_M_contig77.18947.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig77.18947.1
Unique NamemRNA_F-serratus_M_contig77.18947.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig77.18947.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.040e-10
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 3 
Query:    3 FARDGRSCYMHGTEEEWRKKIAAGGRERDDALSLNYFSSSAISFPLAAQLAE 158
             ARDG  C++HGTE E + K+A GG  +++AL LNY+SS AI FPLAAQ A+
Sbjct:   54 LARDGERCFLHGTENERKAKVAKGGTVKEEALRLNYYSSGAIRFPLAAQTAD 105
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig77.18947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX32_9PHAE1.040e-1057.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig77contigF-serratus_M_contig77:102939..103491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig77.18947.1prot_F-serratus_M_contig77.18947.1Fucus serratus malepolypeptideF-serratus_M_contig77 102939..103462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932302.385859-CDS-F-serratus_M_contig77:102938..1030071622932302.385859-CDS-F-serratus_M_contig77:102938..103007Fucus serratus maleCDSF-serratus_M_contig77 102939..103007 -
1690964242.9285595-CDS-F-serratus_M_contig77:102938..1030071690964242.9285595-CDS-F-serratus_M_contig77:102938..103007Fucus serratus maleCDSF-serratus_M_contig77 102939..103007 -
1622932302.4015112-CDS-F-serratus_M_contig77:103186..1034621622932302.4015112-CDS-F-serratus_M_contig77:103186..103462Fucus serratus maleCDSF-serratus_M_contig77 103187..103462 -
1690964242.9457204-CDS-F-serratus_M_contig77:103186..1034621690964242.9457204-CDS-F-serratus_M_contig77:103186..103462Fucus serratus maleCDSF-serratus_M_contig77 103187..103462 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932302.4164746-UTR-F-serratus_M_contig77:103462..1034911622932302.4164746-UTR-F-serratus_M_contig77:103462..103491Fucus serratus maleUTRF-serratus_M_contig77 103463..103491 -
1690964242.9651618-UTR-F-serratus_M_contig77:103462..1034911690964242.9651618-UTR-F-serratus_M_contig77:103462..103491Fucus serratus maleUTRF-serratus_M_contig77 103463..103491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig77.18947.1

>prot_F-serratus_M_contig77.18947.1 ID=prot_F-serratus_M_contig77.18947.1|Name=mRNA_F-serratus_M_contig77.18947.1|organism=Fucus serratus male|type=polypeptide|length=115bp
MHGTEEEWRKKIAAGGRERDDALSLNYFSSSAISFPLAAQLAEGIGAKII
CLQTLLEGFMVTRVSHNQDAHIDNIYRAFFNANECYGRGHIQKNMKKNVG
KCAKGNGDRVSRNFN
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mRNA from alignment at F-serratus_M_contig77:102939..103491-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig77.18947.1 ID=mRNA_F-serratus_M_contig77.18947.1|Name=mRNA_F-serratus_M_contig77.18947.1|organism=Fucus serratus male|type=mRNA|length=553bp|location=Sequence derived from alignment at F-serratus_M_contig77:102939..103491- (Fucus serratus male)
CATTCGCGCGGGACGGAAGGAGTTGCTACATGCACGGGACTGAAGAAGAG
TGGCGAAAGAAGATTGCAGCGGGAGGCCGCGAGCGGGACGACGCTTTGTC
ACTAAACTACTTCTCCAGCTCTGCTATTTCGTTCCCTCTCGCGGCCCAGC
TGGCAGAGGGCATTGGAGCGAAGATCATTTGCTTACAAACACTGCTCGAG
GGGTTCATGGTAACAAGGGTCTCTCATAATCAAGATGCTCATATCGACAA
TATCTACAGAGCTTTCTTCAACGCGAACGAGTGCTATGGTCGTGGGCATA
TTCAGGTCGGTGGTGGACTTATGTACCAGGTATACCGTAAACGCGCTTGT
TCAATGTTATCAGAACCTCTCTTTTTTTGCGGTAATCATAAGTTTTCGTT
TTGTAACCTAATTGTACGCTCACACGCCTCCCTCGTGGCGTGTCCTTCTA
TTTACACACTTTCCTTTTGTCCTCTTCACGGCAGAAAAATATGAAGAAGA
ACGTCGGGAAATGCGCGAAAGGGAACGGTGATCGAGTCAGCCGCAACTTC
AAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig77:102939..103491-

>mRNA_F-serratus_M_contig77.18947.1 ID=mRNA_F-serratus_M_contig77.18947.1|Name=mRNA_F-serratus_M_contig77.18947.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig77:102939..103491- (Fucus serratus male)
ATGCACGGGACTGAAGAAGAGTGGCGAAAGAAGATTGCAGCGGGAGGCCG
CGAGCGGGACGACGCTTTGTCACTAAACTACTTCTCCAGCTCTGCTATTT
CGTTCCCTCTCGCGGCCCAGCTGGCAGAGGGCATTGGAGCGAAGATCATT
TGCTTACAAACACTGCTCGAGGGGTTCATGGTAACAAGGGTCTCTCATAA
TCAAGATGCTCATATCGACAATATCTACAGAGCTTTCTTCAACGCGAACG
AGTGCTATGGTCGTGGGCATATTCAGATGCACGGGACTGAAGAAGAGTGG
CGAAAGAAGATTGCAGCGGGAGGCCGCGAGCGGGACGACGCTTTGTCACT
AAACTACTTCTCCAGCTCTGCTATTTCGTTCCCTCTCGCGGCCCAGCTGG
CAGAGGGCATTGGAGCGAAGATCATTTGCTTACAAACACTGCTCGAGGGG
TTCATGGTAACAAGGGTCTCTCATAATCAAGATGCTCATATCGACAATAT
CTACAGAGCTTTCTTCAACGCGAACGAGTGCTATGGTCGTGGGCATATTC
AGAAAAATATGAAGAAGAACGTCGGGAAATGCGCGAAAGGGAACGGTGAT
CGAGTCAGCCGCAACTTCAACAAAAATATGAAGAAGAACGTCGGGAAATG
CGCGAAAGGGAACGGTGATCGAGTCAGCCGCAACTTCAAC
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