mRNA_F-serratus_M_contig7697.18944.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7697.18944.1
Unique NamemRNA_F-serratus_M_contig7697.18944.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7697.18944.1 vs. uniprot
Match: D8LJD9_ECTSI (PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJD9_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 7.840e-19
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   82 VPFEAAKWVSEEMPACTLSVKIGGTHALLMDAGVMDSVLEFICKDFEHFEGQATGRTLGSAGVSRSAS 285
            VPF AA+W++EEMPACT+SVK+GGTHAL+MD+GV+D VLE +C+DF+HFE  A  R L     S S S
Sbjct:  300 VPFPAAQWMAEEMPACTVSVKMGGTHALIMDSGVVDCVLECMCEDFKHFEEHAASRRLKKRPPSESKS 367
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7697.18944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJD9_ECTSI7.840e-1961.76PH domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7697contigF-serratus_M_contig7697:4076..10334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue7.2e-16
Seed eggNOG ortholog2880.D8LJD9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ureidoglycolate hydrolase activity
EggNOG OGs2QTP8@2759,COG3194@1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size350
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7697.18944.1prot_F-serratus_M_contig7697.18944.1Fucus serratus malepolypeptideF-serratus_M_contig7697 4078..10334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932302.1112268-CDS-F-serratus_M_contig7697:4077..41531622932302.1112268-CDS-F-serratus_M_contig7697:4077..4153Fucus serratus maleCDSF-serratus_M_contig7697 4078..4153 -
1690964242.82154-CDS-F-serratus_M_contig7697:4077..41531690964242.82154-CDS-F-serratus_M_contig7697:4077..4153Fucus serratus maleCDSF-serratus_M_contig7697 4078..4153 -
1622932302.1303515-CDS-F-serratus_M_contig7697:5458..55781622932302.1303515-CDS-F-serratus_M_contig7697:5458..5578Fucus serratus maleCDSF-serratus_M_contig7697 5459..5578 -
1690964242.8344145-CDS-F-serratus_M_contig7697:5458..55781690964242.8344145-CDS-F-serratus_M_contig7697:5458..5578Fucus serratus maleCDSF-serratus_M_contig7697 5459..5578 -
1622932302.1557426-CDS-F-serratus_M_contig7697:6475..65511622932302.1557426-CDS-F-serratus_M_contig7697:6475..6551Fucus serratus maleCDSF-serratus_M_contig7697 6476..6551 -
1690964242.842943-CDS-F-serratus_M_contig7697:6475..65511690964242.842943-CDS-F-serratus_M_contig7697:6475..6551Fucus serratus maleCDSF-serratus_M_contig7697 6476..6551 -
1622932302.1718538-CDS-F-serratus_M_contig7697:10258..103341622932302.1718538-CDS-F-serratus_M_contig7697:10258..10334Fucus serratus maleCDSF-serratus_M_contig7697 10259..10334 -
1690964242.8515334-CDS-F-serratus_M_contig7697:10258..103341690964242.8515334-CDS-F-serratus_M_contig7697:10258..10334Fucus serratus maleCDSF-serratus_M_contig7697 10259..10334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7697.18944.1

>prot_F-serratus_M_contig7697.18944.1 ID=prot_F-serratus_M_contig7697.18944.1|Name=mRNA_F-serratus_M_contig7697.18944.1|organism=Fucus serratus male|type=polypeptide|length=116bp
DTAPGFRLPGRFHAGPRLPRESRPHGTVPFEAAKWVSEEMPACTLSVKIG
GTHALLMDAGVMDSVLEFICKDFEHFEGQATGRTLGSAGVSRSASPGTRN
TFKQRDTSCAERAYSS
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mRNA from alignment at F-serratus_M_contig7697:4076..10334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7697.18944.1 ID=mRNA_F-serratus_M_contig7697.18944.1|Name=mRNA_F-serratus_M_contig7697.18944.1|organism=Fucus serratus male|type=mRNA|length=6259bp|location=Sequence derived from alignment at F-serratus_M_contig7697:4076..10334- (Fucus serratus male)
GATACAGCCCCTGGGTTTCGACTACCGGGACGTTTCCATGCCGGTCCACG
TCTTCCACGGGAGAGCAGACCGCATGGTATGTATAGTGTCGTGTGGTATT
GTACGGTATGGTAGGGTGTGGCATGGTATGGTATATGTGATGAGATGAGA
TGGTATGGCGTGGCTAGAGCGAACGCCGAGAATTTTCGGACAACGTTTTG
TTGAGTTCTTCGGACCAAGTGATTAATTGCCGTTTGTTGTTGTTTTTTTC
GGTTTTGGACGAAGCATTTTTACCTGGCTATTTTTATCAGGGCTTTGAGT
CGCCACTTGGATGGTATGGTAAAGAAAAGCCCGCCGCGATATTATTTGGG
GGTTACCATCGCTTTCAATAGGATGGGATCAATCGCCCGTGGATGGTAAT
GGGGTGGGATGGAAATTTCTGTGTGGTGATGGGATGGGATGATAAACTTG
TGGTGCTGGGATGGGAAACTTCTAGTGCTGGGATGGGATGGGATGGAAAA
CTACTGGTGCTGGGCTGGGATGGGATGGTATATGATATAGTACAGAACTC
GATGCCCTGCGTGCTTGTCATGTCCGACTGGACGCCGAAGACGGGGCGGC
CATCGCACCCAAGCTCTTTCGCAGAATCAAGCGGTGCCTTGAGCTTCGCG
ATGATGCCGTCGCGTACAGCGTCGGCCAAGCCGTCCAGAATACGGTTCAT
CGTGTCGTGGTGGATAGTCGTCTGCACGTAAGCGGGGCATAAGCCGCCGA
TGAAGTATTGAGACCCACTCTGCCTGGCCATGTTGAACGGGCGCTCATCG
ACGCAGCACATGATGTATTAATAGTATCTTGAAGTATCTTGTGTTGCTGC
TCTTCCTTTTCCTTCGTTGACATTGGGCGAATGAAGAGGTCTTCCAGGTT
ACGCTACCCAATAACCCCTCCCGTCTTGGGTCATAACCTGTCATGCTGTA
GTCATGCTGTAGTTATGCTGTAGCCGTAAGATATGGGTTGAGTGGGGGAT
TTTGTAATTTTAGTGCCACGGTGTTGGCATGTATTGCATAACTGGAAATT
TCGAAAAGACGAGGGTAATTAAAAAACACGAAAAACAGTGACAATAACAC
CATGTATATACGTAGGTATGATACTTAATGGTGCGCTGTTGTAGAGGCTG
GTCACTACATACAGTACATACAGTACTTTTGGTAGACTACATCACATACG
GGAGTTTTTTATTGTTTTTTTTTATGTAGTAGGCAGTATGTCTGTCTGTC
TCTCGCCTAGACCAGTCATTAATACAAGTGAGGCACAAGAGGCACAGAGA
TCCTTCGGGACTGTTGCTTCGTTTGGTATTTATTAGTAATTTAGACTACA
ATGTTTTTAGACTGAGAGAACATTTTGACGTATTTTATACTGCACTGCCC
TTAGATATACAGAATAGTTCTACACATAGACTGTACGTGTGGAGAAATTG
CTGGAACAATTGCCAGATGTTAGCGATCTATAATAGTTCAATAGGCTGAG
AGATGATAATTTGCACCTGATAATTTGTACCGTATTGTTTCTGCGAGAAA
AAAAAAACAAAAACACCTTGGACCTTGGACCTTTGAGAAAGGGACAGAGA
AAAGTTAGAGAGTTTAGAAATCTGAGAAATCTGAGTGTGGAGAAATTGCT
GGAACAATTGCCAGATGTTAGCGATCTATAATAGTTCAATAGGCTGAGAG
ATGATAATTTGCACCTGATAATTTGTACCGTATTGTTTCTGCGAGAAAAA
AAAACAAAAACACCTTGGACCTTGGACCTTTGAGAAAGGGACAGAGAAAA
GTTAGAGAGTTTAGAAATCTGAGAAATCTGAGAAATAGAGAGAGAAAAGG
GAGAATGGAAATTCAAAGGGAGACTAGCCTGTAGAAATATGTAGACGCCA
CATGGAATACGGGCCAACGTAGACACGGCATACTGACACGGCATACTGCT
CACCCGTCAGAACTTGCGCCTTAAGCCTGCTTCGCGTTGGAGGACGATCG
ACTTGCCTCCTTCACAAGCGCATGCTCGGTTGGGTGACATCTCTCCAAGT
GCTTGAAAAAAACGCTCGTCCCGGTGCCATGAACTCCAGACAACCTGTCG
GCCGAGACATACTTAAGCGCGCGCCGCACATCGATGTGCGGGCAGGAAGC
TTTCCAGCCGCACCAAGGGCTCTGCGCACATTGCACCTTGTGTTCTTACC
GACCGCATCGGGCGGGTCGAAGTGCTACCAAGCTCTAGAGGTCCTCGTGG
TCTTCCCAGTGCCAGCCCCGCGCAAGACTGCCTTGGCCCCAGAGGTGCCA
GGCGAGGTGCCAGCAGCAGGCACTGCGGGAGTTTGCACGCCCGTAGGTGA
ATGTGGTCCGGCAGGCTCACCGATGCCGATGGGGGGAGGGTCCGCCATGT
TTGCGGATGATTGCTGTATTTATGTGCTGCGTTTGGGAAGGAGTGGTCTG
CTGCTGGTAGACGTGTTGGTACGACTACGGATGGAAGGTTTGGGGTGGTG
GACTATTGTGTTGGTATGTACATGGGACAGATGATACAAATGGGGTGGTA
TTGGGATGGTACGAAGTTTTATCATTGTGTGTTGGGGGGGATGGGAACAG
TTGCGGGAGATGGTATGGTATGGTGCTGGTATCAGAAAGTTGGGTGATGG
TGATAGCGATGGGATGGTAACTGGTGGTGGGACATAAGTAAATATTTCCA
TCCCATCCCCTTCCCATTCCGTTTTGATGGAAATACCATCCCAATACATT
ACCACGTAAAGCCCTGATTTGTATATTTTCATTTATTATCAAGTTATCTT
TTTGGATTTTCTTCACCCCTACTCCCGGGTATCTTACCGTTTTTCCCCTT
TTTTAGTTTTTCCCCTTTTTTAGTTTTTCGCCTTTTTTAGTTTTCGCGAC
GCAAAGTTCTCCAGCAATTTCAACGCGGCCGGTGTTGTAGAGAAGGTATG
GCATTGTAGAGTATGGTGGGGGCCGGAGGCGGGGGCGATTTCCCACAGAG
TCTGCAGGAAAAACCCCGGCGAATCGTGGTTCTTGAGACGTTTTCACAAA
CATGTTTGAAGTTTTTTTCGTTTTTTTAAAGGTTTTTCGCCCTTTTTTTA
CAGTTTCGCGGACGTGTTTTTTGTCAGTCGAAATAAACATCTCGTTCCTC
GCTATAGCTGTGAAGATGCTGACTGCCGTATCACAACACCTTGGAAGGCG
TTCTAAAGCCATAAACAGAGGGATTTTTCCCCTCCGTATCAGTACATTCA
GTGATGTATTTCCCGCTGAGACAGGTCTCGGCAAAGACAGCAGACAGCGG
TAGCAAAATTTGAAGCATTGGAGCAGTGCGCGCTATTATTATAATATAAA
TGTCTACAGTAGTATAGTAATAGTAATAGTAGTACAGTAGGTCAACCTGC
ACACCTGCCAATGCGCGAGTCGCGAGTTCGATTTTTGTGGAAACCAAAAT
TTGTGTTCCGGCGTCCGTAGCGGAAAGCGTTAGTACTAATAGTAAGTAAA
ATTCAACCATTGGCTGAGTTGTAAGAGTGCTGAACTTGCATCGCGATAAA
AAAACGTGAGGCGAGAACCGGGGAGACATGGGAAATTCCTTAGTGACCAC
AGTATAGGCAGGATGGTAACGTTGAGGGCCATCGACTATAAGCGAGATGA
AAAATATATATAAAAAAATCCAGGTACACAGTATCACGAGTATCGATCGG
CCTTTTTTGACGTTTCTCCTGTTTTTTCTTTTGTTCTTGTGTTTGATTTG
TTTCATTTTTCTCCTTATTTGTCTATTTGTCAGGTACTGTACCCTTCGAA
GCCGCTAAGTGGGTGTCAGAGGAGATGCCCGCTTGCACGCTCTCCGTCAA
GATCGGAGGGTGAGGCTTCATGTTATATTTAACCGTTTTGTATACAGTAT
CATGCTGTGGAGCTTAAAGATCTACTAATGATAGGTACCCCTATACACTG
TATACTGTATACTATACTGTATACTATATACTGTATACCGTACATGACCC
GGCGAGCCTTAACCTCGAAATAGATCTCTACTGAGGGTTTACCTCTAGAG
CTACAAGGCATTACACCCGGTGAACGCTGAAATAGACAATAAACACAGCA
GAGGAGTTATTCAAGTACTTGTTGCACGTGGGGAGGGGGGTTGGAACGAA
TCTGTCCCCTGCCTGAGGATGGGGGGCGTGTAAAACCTTGTGACCGGGAA
AGGTAAGATTTTGTTTTTTGATGCCAGAAAACAAGCTGCACACTGTACTT
TATATGTTTTCTGTGTTATCTGTAAGGCGAAATGGAGAGAAGGGGAGAAG
CCCCATCTTTGGTAGGGGATGCCTTCATATCATCCCCCCCCTTAGACCCG
GGGAAAATGTGTTAACAACCCCCCCCCCCTCCCCCTCCCTAGCGCGCCTC
GAATCAACCACATAATAATATTATTGTATGAATGAACAATAGTATGATGG
TATTTTAGTATAACGAAAGGATGTGTTATAATACACTGTAAAGGGAATCA
GCTGAGGCTGGCGTTGAGAGGCGGCTAGCGAAGCGCTCGGATGTCTTGCT
CGTGCGTCCTCATGATCATGATCATGATCGATATGTTATGTTATGTTATG
TTATGTTACAAGCACCGGGAGTTTCCCTAGGGACTACACTACACTATCAA
TACTGTACCAAAGATGCTTCCTCGAGGCACAGCGTCACACACAGTCAAAA
CTCAAAACACGCATCAATATTATATATTTGTACTGGGTGTCGTAAATGTG
CCGCAGGACCCATGCGCTGCTGATGGACGCCGGAGTGATGGACAGCGTGC
TGGAGTTCATCTGCAAAGACTTTGAGCACTTTGAGGGTCAGGCGACGGGC
AGGACCTTGGGCAGCGCCGGCGTTAGGCAGGTGAGTTGAAATGATATGCA
TATGAAACGTCCGCTTTTAGGGATTCCTTTTTTTTTAACAGTCATTTTGC
AAAAGGGGATGCTGAGCCCCCCCCTCCCTAAGAAAGAATAGGCAAAACAT
ATTTTCCTTCCCGCCCTATTAAAAGCCTATGTTAAAGTTAATACTGGTAT
ATAGCAATACCTATAGTAATAGTAATGTTAACATTTAGTAATAGAGAGGA
GTCTGGTAATGTTGCCGTCGAAAGTCTGAGGGCCGAACGGGGATTTCAAC
AAGTGAATATCGATTAATTCGTTAGTACACAAAATTCAACTTCACGGTCG
ACGAGGGAAAGGAACGGCCGAATCCTTCTCGCGATAAAAGTTAAGGCAAG
CGCCGCGGAAGTAAGGTGGAGAAATCCTGTGTGACTCTCCTTTTTTGTGA
CCCCGGCAGAGGCGTTCACAGGTCTGACGTCCAGAATTCCAGAATGGGGA
AAACAACACACACATACACACACTCACAGAGTCGACGTAGCCTCAAATGC
AGCGTCCATCTGTCTTTGTCTATCTTTATTCGATACTCGAGATGATGACG
TATCTACCAACGTTCTGGAGACTCGGCTCCCCCAAACGCACACTAGTGCG
GCGGGAACGAATGCATCGCCGATGATCGCAGTCGCGTTTTTCTCATAACT
GAACGTGCATCGTTCTAAAGGCCTTGGCCCCGATCATGCCGGCAGCAGAC
AACAAATGACATAACCCTAACCCCTAACCCCTAACCCCTAACCCCTAACC
CCTTGCTTTTTTTCGGGGCCTCCACACATGACACTTTTCATCATAAGTAC
CAGTATTCGACAAATCATTCGACGCACGCTATTTCCTACCTCATCCCCTG
CATCATTGCATTCATTTTTCTGTACTTAATCCCATATACATCATCCCTCG
CCCAACATTCCGTATAGATCATTCCATACACCATCTTCATGCATCATCCT
ACACATGTTTCAATAGATCTTTCCTATCGATCATCGATCATTCCATTCCG
CACATCACTCCCGAAAATCCCATGATTCCATGCATCGTTCCACACATCAT
TCCCACACAGCCATTCCTAAAAGCCCCACCCATCATTATTTTTATATGAT
ATGTGACTATACCATACCATACATCATTCCATGCAGCATTTTACACACAA
TTTTATATATGCACCATATCCCATGCTGTACACCACCCATCCCCGAAATA
ATGGTACCATGTCCCATGTCCCATGCGGTCGTTCGTTCCTTCTCGCCCTT
CCCCCCGCCGACACACGCGCTTCCGCTCCAGCCGTTCAGCTTCCCCGGGC
ACACGCAACACTTTCAAGCAGAGGGACACCTCCTGTGCCGAGAGGGCCTA
CTCATCAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7697:4076..10334-

>mRNA_F-serratus_M_contig7697.18944.1 ID=mRNA_F-serratus_M_contig7697.18944.1|Name=mRNA_F-serratus_M_contig7697.18944.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig7697:4076..10334- (Fucus serratus male)
GATACAGCCCCTGGGTTTCGACTACCGGGACGTTTCCATGCCGGTCCACG
TCTTCCACGGGAGAGCAGACCGCATGGATACAGCCCCTGGGTTTCGACTA
CCGGGACGTTTCCATGCCGGTCCACGTCTTCCACGGGAGAGCAGACCGCA
TGGTACTGTACCCTTCGAAGCCGCTAAGTGGGTGTCAGAGGAGATGCCCG
CTTGCACGCTCTCCGTCAAGATCGGAGGGTACTGTACCCTTCGAAGCCGC
TAAGTGGGTGTCAGAGGAGATGCCCGCTTGCACGCTCTCCGTCAAGATCG
GAGGGACCCATGCGCTGCTGATGGACGCCGGAGTGATGGACAGCGTGCTG
GAGTTCATCTGCAAAGACTTTGAGCACTTTGAGGGTCAGGCGACGGGCAG
GACCTTGGGCAGCGCCGGCGTTAGGACCCATGCGCTGCTGATGGACGCCG
GAGTGATGGACAGCGTGCTGGAGTTCATCTGCAAAGACTTTGAGCACTTT
GAGGGTCAGGCGACGGGCAGGACCTTGGGCAGCGCCGGCGTTAGCCGTTC
AGCTTCCCCGGGCACACGCAACACTTTCAAGCAGAGGGACACCTCCTGTG
CCGAGAGGGCCTACTCATCACCGTTCAGCTTCCCCGGGCACACGCAACAC
TTTCAAGCAGAGGGACACCTCCTGTGCCGAGAGGGCCTACTCATCA
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