mRNA_F-serratus_M_contig769.18941.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig769.18941.1
Unique NamemRNA_F-serratus_M_contig769.18941.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig769.18941.1 vs. uniprot
Match: A0A6H5LQR5_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQR5_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 9.510e-43
Identity = 68/86 (79.07%), Postives = 75/86 (87.21%), Query Frame = 3 
Query:    9 RGLRRLVDGHAPLWMSSEVYSEPIARFPCPDRPTPGYPTEWPLLDLLRNWNPGNASAIPERHFLGVCRFDYQTELHKAQAYAFREV 266
            RGLRR+VD  +P WMSSEVYSEPI RF CP+ P  GYPTEWPLLDLL NWNPGNAS +PERHFLGVCRF+YQTELHKA+AY+ REV
Sbjct:  638 RGLRRMVDSDSPSWMSSEVYSEPIERFSCPEEPEAGYPTEWPLLDLLANWNPGNASGVPERHFLGVCRFNYQTELHKARAYSLREV 723
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BLAST of mRNA_F-serratus_M_contig769.18941.1 vs. uniprot
Match: D7FMI1_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMI1_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 1.270e-42
Identity = 66/81 (81.48%), Postives = 72/81 (88.89%), Query Frame = 3 
Query:   24 LVDGHAPLWMSSEVYSEPIARFPCPDRPTPGYPTEWPLLDLLRNWNPGNASAIPERHFLGVCRFDYQTELHKAQAYAFREV 266
            +VDG++P WMSSEVYSEPI RF CP+ P  GYPTEWPLLDLL NWNPGNAS +PERHFLGVCRFDYQTELHKAQAY+ REV
Sbjct:    1 MVDGNSPSWMSSEVYSEPIKRFSCPEEPEAGYPTEWPLLDLLANWNPGNASGVPERHFLGVCRFDYQTELHKAQAYSLREV 81
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BLAST of mRNA_F-serratus_M_contig769.18941.1 vs. uniprot
Match: A0A835Z3G1_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3G1_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.770e-25
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 3 
Query:    9 RGLRRLVDGHAPLWMSSEVYSEPIARFPCPDRPTPGYPTEWPLLDLLRNWNPGNASAIPERHFLGVCRFDYQT--ELHKAQAYAFRE 263
            +GL  +VD  AP +MSS   SEP   F CPD P   YP EWP+LDL+ NWNP NAS +P  H+L +CRFDYQ   +L KA A+A+R+
Sbjct:  514 KGLDVVVDAEAPAFMSSRTASEPFEPFSCPDEPPEDYPREWPMLDLIHNWNPDNASYVPPNHYLSICRFDYQDPQDLAKASAFAYRD 600
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BLAST of mRNA_F-serratus_M_contig769.18941.1 vs. uniprot
Match: A0A7S0CFM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CFM4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.010e-13
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 3 
Query:   75 PIARFPCPDRPTPGYPTEWPLLDLLRNWNPGNASAIPERH-FLGVCRFDYQTELHKAQAYAFREV 266
            PI    CPD+P PGYP +W ++D++RNWNP + S       + G+C FD+QTE  KA  Y   EV
Sbjct:   33 PIENLKCPDKPPPGYPKQWKMMDIIRNWNPDDTSDFHTTVIYQGICVFDHQTESEKANNYREAEV 97
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BLAST of mRNA_F-serratus_M_contig769.18941.1 vs. uniprot
Match: A0A7S2FL26_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FL26_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.630e-11
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:   93 CPDRPTPGYPTEWPLLDLLRNWNPGNASAIPERHFLGVCRFDYQTELHKAQAYAFREV 266
            CP  P P YP ++P++DL+ NWNP  A A P +H+  +CRFDY T+L KA AY   E+
Sbjct:  122 CPAVPPPNYPEQFPIMDLIDNWNPDQAEA-PAKHYHALCRFDYATDLEKAFAYREAEL 178
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BLAST of mRNA_F-serratus_M_contig769.18941.1 vs. uniprot
Match: A0A7S4J512_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J512_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.450e-9
Identity = 31/73 (42.47%), Postives = 40/73 (54.79%), Query Frame = 3 
Query:   48 WMSSEVYSEPIARFPCPDRPTPGYPTEWPLLDLLRNWNPGNASAIPERHFLGVCRFDYQTELHKAQAYAFREV 266
            ++  E  S P     CP  P  GYP  WP+LD+L NWNP +A+    R + G+CRFD  TE  KA  Y   E+
Sbjct:  179 YVPIEGESMPYDVNDCPSAPPEGYPMAWPVLDVLENWNPDDATPRA-RIYQGLCRFDAATEYDKALTYRKAEL 250
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BLAST of mRNA_F-serratus_M_contig769.18941.1 vs. uniprot
Match: A0A7S2PJY4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PJY4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.400e-8
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:   93 CPDRPTPGYPTEWPLLDLLRNWNPGNASAIPERHFLGVCRFDYQTELHKAQAYAFREV 266
            CP+ P  GYP +WP+L++ +NW   +A+   E  + G+C FDY+TELHKA  Y   E+
Sbjct:  203 CPEYPPEGYPIQWPILEVTKNWPTDDATPRHEI-YQGLCVFDYRTELHKADNYRKAEL 259
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BLAST of mRNA_F-serratus_M_contig769.18941.1 vs. uniprot
Match: K0TCF5_THAOC (JmjC domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TCF5_THAOC)

HSP 1 Score: 57.8 bits (138), Expect = 9.170e-8
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:   93 CPDRPTPGYPTEWPLLDLLRNWNPGNASAIPERHFLGVCRFDYQTELHKAQAYAFREV 266
            CP+ P  GYPT+WP+L++L NW+P + +   E  + G C FD++TE +KA  Y   E+
Sbjct:  198 CPEFPPDGYPTQWPVLEVLDNWSPDDPTPH-EEIYQGWCVFDFRTEKNKANNYRHAEL 254
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig769.18941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5LQR5_9PHAE9.510e-4379.07JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FMI1_ECTSI1.270e-4281.48JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z3G1_9STRA1.770e-2554.02JmjC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S0CFM4_9STRA2.010e-1346.15Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2FL26_9STRA3.630e-1150.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4J512_9STRA5.450e-942.47Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2PJY4_9STRA1.400e-844.83Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
K0TCF5_THAOC9.170e-843.10JmjC domain-containing protein n=1 Tax=Thalassiosi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig769contigF-serratus_M_contig769:185051..186170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size267
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig769.18941.1prot_F-serratus_M_contig769.18941.1Fucus serratus malepolypeptideF-serratus_M_contig769 185051..186140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932299.317285-CDS-F-serratus_M_contig769:185050..1851061622932299.317285-CDS-F-serratus_M_contig769:185050..185106Fucus serratus maleCDSF-serratus_M_contig769 185051..185106 -
1690964241.4673355-CDS-F-serratus_M_contig769:185050..1851061690964241.4673355-CDS-F-serratus_M_contig769:185050..185106Fucus serratus maleCDSF-serratus_M_contig769 185051..185106 -
1622932299.338279-CDS-F-serratus_M_contig769:185638..1858021622932299.338279-CDS-F-serratus_M_contig769:185638..185802Fucus serratus maleCDSF-serratus_M_contig769 185639..185802 -
1690964241.4890118-CDS-F-serratus_M_contig769:185638..1858021690964241.4890118-CDS-F-serratus_M_contig769:185638..185802Fucus serratus maleCDSF-serratus_M_contig769 185639..185802 -
1622932299.3770783-CDS-F-serratus_M_contig769:186123..1861401622932299.3770783-CDS-F-serratus_M_contig769:186123..186140Fucus serratus maleCDSF-serratus_M_contig769 186124..186140 -
1690964241.5038784-CDS-F-serratus_M_contig769:186123..1861401690964241.5038784-CDS-F-serratus_M_contig769:186123..186140Fucus serratus maleCDSF-serratus_M_contig769 186124..186140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932299.3976243-UTR-F-serratus_M_contig769:186140..1861701622932299.3976243-UTR-F-serratus_M_contig769:186140..186170Fucus serratus maleUTRF-serratus_M_contig769 186141..186170 -
1690964241.5128622-UTR-F-serratus_M_contig769:186140..1861701690964241.5128622-UTR-F-serratus_M_contig769:186140..186170Fucus serratus maleUTRF-serratus_M_contig769 186141..186170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig769.18941.1

>prot_F-serratus_M_contig769.18941.1 ID=prot_F-serratus_M_contig769.18941.1|Name=mRNA_F-serratus_M_contig769.18941.1|organism=Fucus serratus male|type=polypeptide|length=79bp
MATLRCGCLRKSTASRLRDFRAPTDRRPDTPRSGRCWTSSETGIRGTLRR
FPSVTFWEFADSTTRRSCTRRRRTLSGR*
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mRNA from alignment at F-serratus_M_contig769:185051..186170-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig769.18941.1 ID=mRNA_F-serratus_M_contig769.18941.1|Name=mRNA_F-serratus_M_contig769.18941.1|organism=Fucus serratus male|type=mRNA|length=1120bp|location=Sequence derived from alignment at F-serratus_M_contig769:185051..186170- (Fucus serratus male)
GGAACGGTAGAGGGCTGCGTCGTTTGGTCGATGGCCACGCTCCGTTGGTG
AGCAACTGGGACGAGGTGGTGCTCGTGCCCCCGAGTCCTCGCATTTTTCA
CTCGGTTTTTGTATAGAGGAGGGGGTGAGAAGGAGGGAAGGGGAAGAAGG
AGGGGGCATGTTTTACCAGCCTCTGCTCCTTTTTTTTATGCCAAAAAATC
TTTGCGTTTCTCGGAGCGCGTCATGTGCGAAACGCACTGTATTTTCCCCC
TGAACTTTTAACCTTTTGCTGCGAGTTTTGTATCGGTTTTTGAGTTGAAA
GAAAATGGCCGAGTCTCTCGCTTCCCCTTGCTGTACAACTGCAAATACCC
CTCAACCATCGTCCCCAGTGGATGTCTTCGGAAGTCTACAGCGAGCCGAT
TGCGCGATTTCCGTGCCCCGACCGACCGACGCCCGGATACCCCACGGAGT
GGCCGCTGTTGGACCTCCTCCGAAACTGGAATCCGGGGAACGCTTCGGCG
ATTCCCGAGCGTCACTTTCTGGGAGTTTGCAGGTGTGATCGATTCCGGGA
ACGTCCACAAAGTTGTCCAACTTTGTGCTTTCCCCCATGTGCTTCCCGCT
AGCCGGAGGTTTTGGTTCGAAGCCTACACCTCTTCCTGGTGGGAACCCAT
CGCGATCATATTCTTTATTTAATAATTATATACACTGGAGTAGACTATAC
ATTTTCCCGCTTTCCCCCGCTTTTTATGGCTGTCAAGACTCCAAAGCGCC
TAAACACGTTTTTGGTACAAGTACTCGTACTTGTACCAACTTTCCCCCCC
CTCCCCCCCCTGCCAAGTACACTTACACCTACAGTTGCGCTTACACTTAC
ACTTACACTTACACTTACACTTACACTCATGCTTGACACACGTAACACGC
GCTCACAGCGATACTCACGAACTAAACCCATACGCTTACCCACAAACGTA
CGCAGACACCGTACACACTTGCGTACGCCTCAAAACACGCACTCTGCACA
TACACCTGCAAACACACATACACTTGCTTTGACACATACGCGCATGGCTC
TCGCTCTCTTGCAGATTCGACTACCAGACGGAGTTGCACAAGGCGCAGGC
GTACGCTTTCAGGGAGGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig769:185051..186170-

>mRNA_F-serratus_M_contig769.18941.1 ID=mRNA_F-serratus_M_contig769.18941.1|Name=mRNA_F-serratus_M_contig769.18941.1|organism=Fucus serratus male|type=CDS|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig769:185051..186170- (Fucus serratus male)
ATGGCCACGCTCCGTTGATGGCCACGCTCCGTTGTGGATGTCTTCGGAAG
TCTACAGCGAGCCGATTGCGCGATTTCCGTGCCCCGACCGACCGACGCCC
GGATACCCCACGGAGTGGCCGCTGTTGGACCTCCTCCGAAACTGGAATCC
GGGGAACGCTTCGGCGATTCCCGAGCGTCACTTTCTGGGAGTTTGCAGTG
GATGTCTTCGGAAGTCTACAGCGAGCCGATTGCGCGATTTCCGTGCCCCG
ACCGACCGACGCCCGGATACCCCACGGAGTGGCCGCTGTTGGACCTCCTC
CGAAACTGGAATCCGGGGAACGCTTCGGCGATTCCCGAGCGTCACTTTCT
GGGAGTTTGCAGATTCGACTACCAGACGGAGTTGCACAAGGCGCAGGCGT
ACGCTTTCAGGGAGGTGAATTCGACTACCAGACGGAGTTGCACAAGGCGC
AGGCGTACGCTTTCAGGGAGGTGA
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