mRNA_F-serratus_M_contig769.18931.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig769.18931.1
Unique Name	mRNA_F-serratus_M_contig769.18931.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig769.18931.1 vs. uniprot
Match: D7FMP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP4_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 5.870e-7
Identity = 69/170 (40.59%), Postives = 89/170 (52.35%), Query Frame = 2

Query:  200 IPAAIFVSRSHRHHSPRSGRSDTGTKGMGDSALSKPHRGKASLSAAATQTSARSSANTLSSTRGARG----HANSETSASVSTSRSLSAMSAEEMNTTRGQDTSR-TVGTTATSAMXXXRAEATLALLEAERTQLERRLKKVEEELEQEEALARKELRGR-HLNGNIPRT 691
            IPA I    SHR          +G  G G +  ++     AS  +A T  S        SS++G RG    +  S   +  +TSRSL++ +A  + T    DT R TV TT T AM   RAEATLA+LEAER QLE RLKKVE+EL QE  L+++  + R H     PRT
Sbjct:   47 IPATIAAPASHR----------SGGGGDGTNRTARHEEPTASARSAGTAAS-------FSSSKGGRGLPSAYCGSGVPSGRTTSRSLTSSAAISL-TDYATDTPRETVRTTTTMAMSTARAEATLAVLEAERAQLEHRLKKVEDELRQERILSKENNKKRGHRLAAPPRT 198

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig769.18931.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig769.18931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FMP4_ECTSI	5.870e-7	40.59	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig769	contig	F-serratus_M_contig769:32922..34704 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	846
Cds size	609
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig769.18931.1	prot_F-serratus_M_contig769.18931.1	Fucus serratus male	polypeptide	F-serratus_M_contig769 32985..34530 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932298.7401855-UTR-F-serratus_M_contig769:32921..32984	1622932298.7401855-UTR-F-serratus_M_contig769:32921..32984	Fucus serratus male	UTR	F-serratus_M_contig769 32922..32984 +
1690964241.2107172-UTR-F-serratus_M_contig769:32921..32984	1690964241.2107172-UTR-F-serratus_M_contig769:32921..32984	Fucus serratus male	UTR	F-serratus_M_contig769 32922..32984 +
1622932298.8332522-UTR-F-serratus_M_contig769:34530..34704	1622932298.8332522-UTR-F-serratus_M_contig769:34530..34704	Fucus serratus male	UTR	F-serratus_M_contig769 34531..34704 +
1690964241.264858-UTR-F-serratus_M_contig769:34530..34704	1690964241.264858-UTR-F-serratus_M_contig769:34530..34704	Fucus serratus male	UTR	F-serratus_M_contig769 34531..34704 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932298.7680142-CDS-F-serratus_M_contig769:32984..33407	1622932298.7680142-CDS-F-serratus_M_contig769:32984..33407	Fucus serratus male	CDS	F-serratus_M_contig769 32985..33407 +
1690964241.223119-CDS-F-serratus_M_contig769:32984..33407	1690964241.223119-CDS-F-serratus_M_contig769:32984..33407	Fucus serratus male	CDS	F-serratus_M_contig769 32985..33407 +
1622932298.7826395-CDS-F-serratus_M_contig769:33972..34093	1622932298.7826395-CDS-F-serratus_M_contig769:33972..34093	Fucus serratus male	CDS	F-serratus_M_contig769 33973..34093 +
1690964241.2394884-CDS-F-serratus_M_contig769:33972..34093	1690964241.2394884-CDS-F-serratus_M_contig769:33972..34093	Fucus serratus male	CDS	F-serratus_M_contig769 33973..34093 +
1622932298.8041394-CDS-F-serratus_M_contig769:34465..34530	1622932298.8041394-CDS-F-serratus_M_contig769:34465..34530	Fucus serratus male	CDS	F-serratus_M_contig769 34466..34530 +
1690964241.2479217-CDS-F-serratus_M_contig769:34465..34530	1690964241.2479217-CDS-F-serratus_M_contig769:34465..34530	Fucus serratus male	CDS	F-serratus_M_contig769 34466..34530 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig769:32922..34704+
coding sequence from alignment at F-serratus_M_contig769:32922..34704+

protein sequence of mRNA_F-serratus_M_contig769.18931.1

>prot_F-serratus_M_contig769.18931.1 ID=prot_F-serratus_M_contig769.18931.1|Name=mRNA_F-serratus_M_contig769.18931.1|organism=Fucus serratus male|type=polypeptide|length=203bp
MHHAVDIFPCALEPKAELYEGAADDCIVCRFFCSGRPIKQKHSALNPGRD
ICIKISSAPFSAIGEVRHRNQGYGGFSFVEAPPGKSLSFGGRNADERAIF
CQYFIINPGRKGARELGDVGVSQHVAIAQRDERGGNEHHSGTGYIKDRWY
DGDFGHEHRAGGSHSSLAGSRAHAIGAPPKKGGGRARTGGGVGEERAPRT
PS*

mRNA from alignment at F-serratus_M_contig769:32922..34704+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig769.18931.1 ID=mRNA_F-serratus_M_contig769.18931.1|Name=mRNA_F-serratus_M_contig769.18931.1|organism=Fucus serratus male|type=mRNA|length=1783bp|location=Sequence derived from alignment at F-serratus_M_contig769:32922..34704+ (Fucus serratus male)
CCGAGATCACCTTGTGTTGCTGGGCTGCTACATGCCCAAAGCGATCACAT
AGCCCCTAAGAGAATGCATCATGCTGTGGACATATTTCCATGTGCCTTAG
AACCAAAGGCCGAGTTGTATGAGGGCGCCGCGGACGACTGTATTGTCTGT
CGTTTCTTTTGTTCGGGACGACCTATAAAGCAGAAACACTCCGCCCTCAA
TCCCGGCCGCGATATTTGTATCAAGATCTCATCGGCACCATTCTCCGCGA
TCGGGGAGGTCCGACACAGGAACCAAGGGTATGGGGGATTCAGCTTTGTC
GAAGCCCCACCGGGGAAAAGCCTCTCTTTCGGCGGCCGCAACGCAGACGA
GCGCGCGATCTTCTGCCAATACTTTATCATCAACCCGGGGCGCAAGGGGG
CACGCGAACTCGGAGACGTCGGCGTCAGTCAGCACGTCGCGATCGCTCAG
CGCGATGAGCGCGGAGGAAATGAACACCACTCGGGGGTGATCTTAAGCTA
CATAAATATTAATATATAGTGTAGATAGTACATGGACCATTTTAAGATGA
GTTCCTTTGCACCGCTAATGACGAGCTTTTCCCGAAAAAAATCTGAACGC
AATCCAAACGCTTAGTTGGGAAATGCGGGTGTTGGAACCAAAAATTCACA
TGGGATTCAGTCGAGTTAGTTCGCCAACGTTTAAATTACCACCTGGTGTT
ATATCGGGGCCATATCGTACTCGTGCATGCATAAGATTCTTATCGGCCAA
CCGACGACTGGCGGCGTCGAAATAGACTTACCCCAGACTATGTAGAGCGT
TTCGGCCTCGATTTTACAGGGCCGCCCCAGTAAATCAACGTTTCGATATA
TCGCGATAAACATTGAGACAGGGCTACTTAACGATAAATTATGTACGGCT
ATTTAATTCAAGGATTGAATGTTTGCAACATTTTTTGGGGTCACTGCATA
GTAGAGCGCGGCGACGGTAAACTACGTTGACGATGCTCCATCTCCAGTCG
AGCTCATTCCCTCTTCTTTATGTTTGTTATGTTTCACTTTTCACTTAACA
GACAGGATACATCAAGGACCGTTGGTACGACGGCGACTTCGGCCATGAGC
ACCGCGCGGGCGGAAGCCACTCTAGCCTTGCTGGAAGCAGAGCGCACGCA
ATTGGAGCGCCGCCTAAAAAAGGTGTTGAAGATCGGGGGTTACCTCAAGA
TACGATTGTTTTATGCGGCGGGATAGATATCGTTCCGCCGCCGCACACGC
GTCATTCCTATTTAGCGTTTCACTTTGGGAAGTCACGCCACAGCCCCAAA
AGGGGGCCCCACCAGGAACACATTTCGTGGGGTGAAAAACGGTATATATT
GAGTCTTACAGTAAAGTGGGATGGGTTAGAGTGCGCAGGATGTGCCGTAA
CGAGGAATACTGAGATCAGTATCAATAATCCCAGAGCTCAGGGGAAGAAA
AAGGGACGGATCGTTAGACGGATATCCTTAATATCCAGCCCACACGAAAC
AACGAGGCATTAGAAAAAATATTGGCCTCTCGGTTGCCTCCCAGGTGGAG
GAAGAGCTCGAACAGGAGGAGGCGTTGGCGAGGAAAGAGCTCCGCGGACG
CCATCTTAACGGGAACATCCCCCGCACGGCGCATTGAACTTTCCGCTCGG
TCGTGAAGAGGGTTGCCGTGTAGACGAAAAAGGGGGGGGGCGTTAAAAAT
CGCTAGGGTACATCCTCTCGCATTTTGCTGCTCACAAAACAAAACACGGT
TGCGGGTGAGACGATCGTTCGCCAGTAGGCCTA

Coding sequence (CDS) from alignment at F-serratus_M_contig769:32922..34704+

>mRNA_F-serratus_M_contig769.18931.1 ID=mRNA_F-serratus_M_contig769.18931.1|Name=mRNA_F-serratus_M_contig769.18931.1|organism=Fucus serratus male|type=CDS|length=1218bp|location=Sequence derived from alignment at F-serratus_M_contig769:32922..34704+ (Fucus serratus male)
ATGCATCATGCTGTGGACATATTTCCATGTGCCTTAGAACCAAAGGCCGA
GTTGTATGAGGGCGCCGCGGACGACTGTATTGTCTGTCGTTTCTTTTGTT
CGGGACGACCTATAAAGCAGAAACACTCCGCCCTCAATCCCGGCCGCGAT
ATTTGTATCAAGATCTCATCGGCACCATTCTCCGCGATCGGGGAGGTCCG
ACACAGGAACCAAGGGTATGGGGGATTCAGCTTTGTCGAAGCCCCACCGG
GGAAAAGCCTCTCTTTCGGCGGCCGCAACGCAGACGAGCGCGCGATCTTC
TGCCAATACTTTATCATCAACCCGGGGCGCAAGGGGGCACGCGAACTCGG
AGACGTCGGCGTCAGTCAGCACGTCGCGATCGCTCAGCGCGATGAGCGCG
GAGGAAATGAACACCACTCGGGGATGCATCATGCTGTGGACATATTTCCA
TGTGCCTTAGAACCAAAGGCCGAGTTGTATGAGGGCGCCGCGGACGACTG
TATTGTCTGTCGTTTCTTTTGTTCGGGACGACCTATAAAGCAGAAACACT
CCGCCCTCAATCCCGGCCGCGATATTTGTATCAAGATCTCATCGGCACCA
TTCTCCGCGATCGGGGAGGTCCGACACAGGAACCAAGGGTATGGGGGATT
CAGCTTTGTCGAAGCCCCACCGGGGAAAAGCCTCTCTTTCGGCGGCCGCA
ACGCAGACGAGCGCGCGATCTTCTGCCAATACTTTATCATCAACCCGGGG
CGCAAGGGGGCACGCGAACTCGGAGACGTCGGCGTCAGTCAGCACGTCGC
GATCGCTCAGCGCGATGAGCGCGGAGGAAATGAACACCACTCGGGGACAG
GATACATCAAGGACCGTTGGTACGACGGCGACTTCGGCCATGAGCACCGC
GCGGGCGGAAGCCACTCTAGCCTTGCTGGAAGCAGAGCGCACGCAATTGG
AGCGCCGCCTAAAAAAGACAGGATACATCAAGGACCGTTGGTACGACGGC
GACTTCGGCCATGAGCACCGCGCGGGCGGAAGCCACTCTAGCCTTGCTGG
AAGCAGAGCGCACGCAATTGGAGCGCCGCCTAAAAAAGGTGGAGGAAGAG
CTCGAACAGGAGGAGGCGTTGGCGAGGAAAGAGCTCCGCGGACGCCATCT
TAAGTGGAGGAAGAGCTCGAACAGGAGGAGGCGTTGGCGAGGAAAGAGCT
CCGCGGACGCCATCTTAA