mRNA_F-serratus_M_contig766.18925.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig766.18925.1
Unique NamemRNA_F-serratus_M_contig766.18925.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig766.18925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig766contigF-serratus_M_contig766:262302..262938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size637
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig766.18925.1prot_F-serratus_M_contig766.18925.1Fucus serratus malepolypeptideF-serratus_M_contig766 262496..262834 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932296.9172056-UTR-F-serratus_M_contig766:262301..2624951622932296.9172056-UTR-F-serratus_M_contig766:262301..262495Fucus serratus maleUTRF-serratus_M_contig766 262302..262495 +
1690964240.3565242-UTR-F-serratus_M_contig766:262301..2624951690964240.3565242-UTR-F-serratus_M_contig766:262301..262495Fucus serratus maleUTRF-serratus_M_contig766 262302..262495 +
1622932296.9628472-UTR-F-serratus_M_contig766:262834..2629381622932296.9628472-UTR-F-serratus_M_contig766:262834..262938Fucus serratus maleUTRF-serratus_M_contig766 262835..262938 +
1690964240.3835127-UTR-F-serratus_M_contig766:262834..2629381690964240.3835127-UTR-F-serratus_M_contig766:262834..262938Fucus serratus maleUTRF-serratus_M_contig766 262835..262938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932296.937011-CDS-F-serratus_M_contig766:262495..2628341622932296.937011-CDS-F-serratus_M_contig766:262495..262834Fucus serratus maleCDSF-serratus_M_contig766 262496..262834 +
1690964240.371861-CDS-F-serratus_M_contig766:262495..2628341690964240.371861-CDS-F-serratus_M_contig766:262495..262834Fucus serratus maleCDSF-serratus_M_contig766 262496..262834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig766.18925.1

>prot_F-serratus_M_contig766.18925.1 ID=prot_F-serratus_M_contig766.18925.1|Name=mRNA_F-serratus_M_contig766.18925.1|organism=Fucus serratus male|type=polypeptide|length=113bp
MRGFCHRPRQRVRCREAEFLRLQSQPSILSLQLFRPTRSWGKDESFRCHD
APYSYLPPQLPKFAPSGSRLNQPILPPTPMSPLPNPRTRYRRLGRRPRPV
CSPSSSRAPESW*
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mRNA from alignment at F-serratus_M_contig766:262302..262938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig766.18925.1 ID=mRNA_F-serratus_M_contig766.18925.1|Name=mRNA_F-serratus_M_contig766.18925.1|organism=Fucus serratus male|type=mRNA|length=637bp|location=Sequence derived from alignment at F-serratus_M_contig766:262302..262938+ (Fucus serratus male)
GCCACGACTGCCCGCGGCTACCCTCGGTGGAATGGCGATCTTCGACATCT
TCGGTCGATGTCGAGCCTCGTCCGCCGAAGGCTGCTGCTTCTGCTGCTGC
TTCTTCTGCTGCTCAAACCTCTCCCTTCGATCTTCACCCGCATCGTCAAT
GGCGTCCACAGCAGTGGTAGCCTGGACGTCGATCTGGCTGGAACATGAGG
GGGTTTTGCCATCGACCTCGGCAGCGAGTAAGGTGCCGTGAAGCTGAGTT
TCTGAGGCTTCAGTCCCAGCCGTCGATTCTATCGCTTCAGTTGTTCCGGC
CAACAAGGTCTTGGGGGAAAGATGAATCCTTTCGATGCCACGACGCTCCC
TACTCCTACCTGCCGCCGCAGCTGCCGAAGTTCGCTCCCAGCGGCTCCCG
TTTGAACCAACCCATTCTTCCTCCAACTCCGATGAGTCCTCTTCCGAATC
CTCGTACTCGCTATCGTCGTCTGGGTCGTCGGCCTCGCCCTGTTTGTTCT
CCGAGTAGCTCTCGAGCTCCGGAATCGTGGTAGATTCGATATCCACCATT
TTCAGCTTCTTTTGAACGCACCGCTGGTCACTGGTGCTTACAACGGGCGC
CTCGTCCTCGCAATTCATTACACCAGGTGGCCACATT
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Coding sequence (CDS) from alignment at F-serratus_M_contig766:262302..262938+

>mRNA_F-serratus_M_contig766.18925.1 ID=mRNA_F-serratus_M_contig766.18925.1|Name=mRNA_F-serratus_M_contig766.18925.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig766:262302..262938+ (Fucus serratus male)
ATGAGGGGGTTTTGCCATCGACCTCGGCAGCGAGTAAGGTGCCGTGAAGC
TGAGTTTCTGAGGCTTCAGTCCCAGCCGTCGATTCTATCGCTTCAGTTGT
TCCGGCCAACAAGGTCTTGGGGGAAAGATGAATCCTTTCGATGCCACGAC
GCTCCCTACTCCTACCTGCCGCCGCAGCTGCCGAAGTTCGCTCCCAGCGG
CTCCCGTTTGAACCAACCCATTCTTCCTCCAACTCCGATGAGTCCTCTTC
CGAATCCTCGTACTCGCTATCGTCGTCTGGGTCGTCGGCCTCGCCCTGTT
TGTTCTCCGAGTAGCTCTCGAGCTCCGGAATCGTGGTAGATGAGGGGGTT
TTGCCATCGACCTCGGCAGCGAGTAAGGTGCCGTGAAGCTGAGTTTCTGA
GGCTTCAGTCCCAGCCGTCGATTCTATCGCTTCAGTTGTTCCGGCCAACA
AGGTCTTGGGGGAAAGATGAATCCTTTCGATGCCACGACGCTCCCTACTC
CTACCTGCCGCCGCAGCTGCCGAAGTTCGCTCCCAGCGGCTCCCGTTTGA
ACCAACCCATTCTTCCTCCAACTCCGATGAGTCCTCTTCCGAATCCTCGT
ACTCGCTATCGTCGTCTGGGTCGTCGGCCTCGCCCTGTTTGTTCTCCGAG
TAGCTCTCGAGCTCCGGAATCGTGGTAG
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