mRNA_F-serratus_M_contig766.18921.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig766.18921.1
Unique NamemRNA_F-serratus_M_contig766.18921.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig766.18921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig766contigF-serratus_M_contig766:248945..250131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1189
Cds size1185
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932296.758941-CDS-F-serratus_M_contig766:248944..2501291622932296.758941-CDS-F-serratus_M_contig766:248944..250129Fucus serratus maleCDSF-serratus_M_contig766 248945..250129 +
1690964240.29825-CDS-F-serratus_M_contig766:248944..2501291690964240.29825-CDS-F-serratus_M_contig766:248944..250129Fucus serratus maleCDSF-serratus_M_contig766 248945..250129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig766.18921.1prot_F-serratus_M_contig766.18921.1Fucus serratus malepolypeptideF-serratus_M_contig766 248945..250129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig766.18921.1

>prot_F-serratus_M_contig766.18921.1 ID=prot_F-serratus_M_contig766.18921.1|Name=mRNA_F-serratus_M_contig766.18921.1|organism=Fucus serratus male|type=polypeptide|length=395bp
LGKASAPSPRGSSSATAEATASVKARRMLSSVSCPSLPSKGTPSTVWSPE
RRATPKLLTKTGAAPAQEAVGAQQRHALQNCDLLSLADCSSEACGACRAP
RGSACGTSRSHPTGGGRQTAGYQGRYEEGGALIAERATGSTVCHPGVVAT
TETVVPPAEQQRGDVAGDGRRVESTGGSATVLRPPRERENNVGAPRAATE
MSIRATSPGGVRDAGAAWWAAAGHCGDDSYRRPRAVAFTTVTRRETKCSG
ADVGSFGGALREEAKERGNSGPDIVCRRVEPQPTGKAVALRQGERLFASS
RNHNSSSGGAGGMRYHYTCRVRAKGGHRLAKSCSSDDELGGSSSSSSNGT
LMPRALALPADLPTPRPGEPAGGTAAGAARLVGLMGSIITRNTGR
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mRNA from alignment at F-serratus_M_contig766:248945..250131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig766.18921.1 ID=mRNA_F-serratus_M_contig766.18921.1|Name=mRNA_F-serratus_M_contig766.18921.1|organism=Fucus serratus male|type=mRNA|length=1187bp|location=Sequence derived from alignment at F-serratus_M_contig766:248945..250131+ (Fucus serratus male)
CTCGGTAAAGCGTCTGCACCTAGCCCACGCGGCTCTTCATCCGCCACGGC
TGAGGCCACTGCGTCGGTAAAAGCAAGGAGGATGTTGTCGTCTGTCTCCT
GCCCATCTTTGCCGTCAAAGGGGACCCCTTCCACTGTGTGGAGTCCGGAA
CGACGAGCGACCCCAAAGCTGTTGACAAAAACGGGTGCCGCACCAGCTCA
GGAAGCAGTTGGCGCTCAACAGCGACACGCTCTTCAAAACTGCGATCTCT
TGAGCCTCGCAGATTGCTCCAGCGAAGCTTGTGGAGCTTGCCGAGCACCC
AGGGGTAGCGCATGTGGTACAAGTAGGTCACATCCTACCGGAGGCGGAAG
GCAGACAGCGGGGTATCAAGGTCGCTACGAAGAAGGGGGGGCTCTAATAG
CAGAACGTGCTACCGGAAGCACGGTTTGCCATCCGGGCGTTGTTGCCACC
ACAGAAACCGTCGTGCCTCCTGCGGAGCAGCAGCGCGGCGATGTTGCGGG
GGATGGGAGGCGCGTAGAGAGTACTGGCGGTAGTGCTACCGTTCTCCGTC
CACCTAGAGAGAGAGAGAATAATGTCGGGGCTCCCCGAGCAGCGACGGAG
ATGAGTATTCGTGCCACCAGCCCAGGCGGTGTTCGCGACGCAGGCGCCGC
TTGGTGGGCCGCTGCCGGCCATTGCGGTGATGATAGTTACCGCCGGCCCC
GTGCTGTCGCGTTTACTACTGTCACCAGGCGGGAAACAAAATGCTCCGGC
GCGGATGTGGGGAGCTTCGGGGGGGCTCTCAGGGAGGAGGCAAAGGAGAG
GGGTAACTCAGGTCCTGACATAGTTTGCCGGCGAGTAGAGCCACAACCCA
CCGGCAAAGCAGTTGCCTTGCGCCAGGGGGAGCGATTGTTCGCCAGCAGC
CGCAATCACAACAGCAGCAGCGGAGGGGCTGGCGGGATGAGGTACCACTA
CACTTGCCGTGTTCGTGCCAAAGGAGGGCATCGCCTAGCAAAATCTTGCA
GCAGTGACGATGAGCTGGGCGGCAGCAGCAGCAGCAGTAGCAACGGTACT
CTGATGCCGAGAGCACTAGCTCTACCCGCGGACCTGCCGACCCCGCGCCC
CGGGGAACCTGCTGGAGGCACGGCGGCCGGTGCCGCTCGGCTTGTTGGGC
TCATGGGAAGCATCATCACAAGAAACACAGGGCGGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig766:248945..250131+

>mRNA_F-serratus_M_contig766.18921.1 ID=mRNA_F-serratus_M_contig766.18921.1|Name=mRNA_F-serratus_M_contig766.18921.1|organism=Fucus serratus male|type=CDS|length=2370bp|location=Sequence derived from alignment at F-serratus_M_contig766:248945..250131+ (Fucus serratus male)
CTCGGTAAAGCGTCTGCACCTAGCCCACGCGGCTCTTCATCCGCCACGGC
TGAGGCCACTGCGTCGGTAAAAGCAAGGAGGATGTTGTCGTCTGTCTCCT
GCCCATCTTTGCCGTCAAAGGGGACCCCTTCCACTGTGTGGAGTCCGGAA
CGACGAGCGACCCCAAAGCTGTTGACAAAAACGGGTGCCGCACCAGCTCA
GGAAGCAGTTGGCGCTCAACAGCGACACGCTCTTCAAAACTGCGATCTCT
TGAGCCTCGCAGATTGCTCCAGCGAAGCTTGTGGAGCTTGCCGAGCACCC
AGGGGTAGCGCATGTGGTACAAGTAGGTCACATCCTACCGGAGGCGGAAG
GCAGACAGCGGGGTATCAAGGTCGCTACGAAGAAGGGGGGGCTCTAATAG
CAGAACGTGCTACCGGAAGCACGGTTTGCCATCCGGGCGTTGTTGCCACC
ACAGAAACCGTCGTGCCTCCTGCGGAGCAGCAGCGCGGCGATGTTGCGGG
GGATGGGAGGCGCGTAGAGAGTACTGGCGGTAGTGCTACCGTTCTCCGTC
CACCTAGAGAGAGAGAGAATAATGTCGGGGCTCCCCGAGCAGCGACGGAG
ATGAGTATTCGTGCCACCAGCCCAGGCGGTGTTCGCGACGCAGGCGCCGC
TTGGTGGGCCGCTGCCGGCCATTGCGGTGATGATAGTTACCGCCGGCCCC
GTGCTGTCGCGTTTACTACTGTCACCAGGCGGGAAACAAAATGCTCCGGC
GCGGATGTGGGGAGCTTCGGGGGGGCTCTCAGGGAGGAGGCAAAGGAGAG
GGGTAACTCAGGTCCTGACATAGTTTGCCGGCGAGTAGAGCCACAACCCA
CCGGCAAAGCAGTTGCCTTGCGCCAGGGGGAGCGATTGTTCGCCAGCAGC
CGCAATCACAACAGCAGCAGCGGAGGGGCTGGCGGGATGAGGTACCACTA
CACTTGCCGTGTTCGTGCCAAAGGAGGGCATCGCCTAGCAAAATCTTGCA
GCAGTGACGATGAGCTGGGCGGCAGCAGCAGCAGCAGTAGCAACGGTACT
CTGATGCCGAGAGCACTAGCTCTACCCGCGGACCTGCCGACCCCGCGCCC
CGGGGAACCTGCTGGAGGCACGGCGGCCGGTGCCGCTCGGCTTGTTGGGC
TCATGGGAAGCATCATCACAAGAAACACAGGGCGGCTCGGTAAAGCGTCT
GCACCTAGCCCACGCGGCTCTTCATCCGCCACGGCTGAGGCCACTGCGTC
GGTAAAAGCAAGGAGGATGTTGTCGTCTGTCTCCTGCCCATCTTTGCCGT
CAAAGGGGACCCCTTCCACTGTGTGGAGTCCGGAACGACGAGCGACCCCA
AAGCTGTTGACAAAAACGGGTGCCGCACCAGCTCAGGAAGCAGTTGGCGC
TCAACAGCGACACGCTCTTCAAAACTGCGATCTCTTGAGCCTCGCAGATT
GCTCCAGCGAAGCTTGTGGAGCTTGCCGAGCACCCAGGGGTAGCGCATGT
GGTACAAGTAGGTCACATCCTACCGGAGGCGGAAGGCAGACAGCGGGGTA
TCAAGGTCGCTACGAAGAAGGGGGGGCTCTAATAGCAGAACGTGCTACCG
GAAGCACGGTTTGCCATCCGGGCGTTGTTGCCACCACAGAAACCGTCGTG
CCTCCTGCGGAGCAGCAGCGCGGCGATGTTGCGGGGGATGGGAGGCGCGT
AGAGAGTACTGGCGGTAGTGCTACCGTTCTCCGTCCACCTAGAGAGAGAG
AGAATAATGTCGGGGCTCCCCGAGCAGCGACGGAGATGAGTATTCGTGCC
ACCAGCCCAGGCGGTGTTCGCGACGCAGGCGCCGCTTGGTGGGCCGCTGC
CGGCCATTGCGGTGATGATAGTTACCGCCGGCCCCGTGCTGTCGCGTTTA
CTACTGTCACCAGGCGGGAAACAAAATGCTCCGGCGCGGATGTGGGGAGC
TTCGGGGGGGCTCTCAGGGAGGAGGCAAAGGAGAGGGGTAACTCAGGTCC
TGACATAGTTTGCCGGCGAGTAGAGCCACAACCCACCGGCAAAGCAGTTG
CCTTGCGCCAGGGGGAGCGATTGTTCGCCAGCAGCCGCAATCACAACAGC
AGCAGCGGAGGGGCTGGCGGGATGAGGTACCACTACACTTGCCGTGTTCG
TGCCAAAGGAGGGCATCGCCTAGCAAAATCTTGCAGCAGTGACGATGAGC
TGGGCGGCAGCAGCAGCAGCAGTAGCAACGGTACTCTGATGCCGAGAGCA
CTAGCTCTACCCGCGGACCTGCCGACCCCGCGCCCCGGGGAACCTGCTGG
AGGCACGGCGGCCGGTGCCGCTCGGCTTGTTGGGCTCATGGGAAGCATCA
TCACAAGAAACACAGGGCGG
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