mRNA_F-serratus_M_contig766.18919.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig766.18919.1
Unique NamemRNA_F-serratus_M_contig766.18919.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig766.18919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig766contigF-serratus_M_contig766:244479..246619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size260
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig766.18919.1prot_F-serratus_M_contig766.18919.1Fucus serratus malepolypeptideF-serratus_M_contig766 244486..246619 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932296.4312725-UTR-F-serratus_M_contig766:244478..2444851622932296.4312725-UTR-F-serratus_M_contig766:244478..244485Fucus serratus maleUTRF-serratus_M_contig766 244479..244485 +
1690964240.1807022-UTR-F-serratus_M_contig766:244478..2444851690964240.1807022-UTR-F-serratus_M_contig766:244478..244485Fucus serratus maleUTRF-serratus_M_contig766 244479..244485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932296.4445543-CDS-F-serratus_M_contig766:244485..2445651622932296.4445543-CDS-F-serratus_M_contig766:244485..244565Fucus serratus maleCDSF-serratus_M_contig766 244486..244565 +
1690964240.1904483-CDS-F-serratus_M_contig766:244485..2445651690964240.1904483-CDS-F-serratus_M_contig766:244485..244565Fucus serratus maleCDSF-serratus_M_contig766 244486..244565 +
1622932296.460826-CDS-F-serratus_M_contig766:246217..2463221622932296.460826-CDS-F-serratus_M_contig766:246217..246322Fucus serratus maleCDSF-serratus_M_contig766 246218..246322 +
1690964240.2002878-CDS-F-serratus_M_contig766:246217..2463221690964240.2002878-CDS-F-serratus_M_contig766:246217..246322Fucus serratus maleCDSF-serratus_M_contig766 246218..246322 +
1622932296.4778063-CDS-F-serratus_M_contig766:246552..2466191622932296.4778063-CDS-F-serratus_M_contig766:246552..246619Fucus serratus maleCDSF-serratus_M_contig766 246553..246619 +
1690964240.2100196-CDS-F-serratus_M_contig766:246552..2466191690964240.2100196-CDS-F-serratus_M_contig766:246552..246619Fucus serratus maleCDSF-serratus_M_contig766 246553..246619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig766.18919.1

>prot_F-serratus_M_contig766.18919.1 ID=prot_F-serratus_M_contig766.18919.1|Name=mRNA_F-serratus_M_contig766.18919.1|organism=Fucus serratus male|type=polypeptide|length=84bp
MSDLDAELRLTLRSFECKLRTRSATIRRAVEEAEAALEEVPRQCQIISKE
PSTPTDSVYPPSIDDQVLEASPEGSSSGSQPFVG
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mRNA from alignment at F-serratus_M_contig766:244479..246619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig766.18919.1 ID=mRNA_F-serratus_M_contig766.18919.1|Name=mRNA_F-serratus_M_contig766.18919.1|organism=Fucus serratus male|type=mRNA|length=2141bp|location=Sequence derived from alignment at F-serratus_M_contig766:244479..246619+ (Fucus serratus male)
CTAAAAAATGTCAGATCTCGATGCCGAACTGAGATTGACGCTACGATCGT
TCGAATGCAAACTGCGAACGCGATCTGCCACCATACGGTAGGTCTCCGTC
ACTCTATGTATTTTCCACTATAATACCTCATGCCTGTGCAATAGGCCCGA
ACTGCAGCAGCTGGTTTGCTCTCGCATCTACAATGTTCTCAAAATGTCAT
TTAGGCTCTCCATAATGGTCTGCACTAGCTAGGTCGGTACTGTACTCGTA
ATAACGTCAATGTTGGTTACTTTCCCTAGAGGTCATCTTGCTGAAGAATA
CCAGAGTATGCACGACGTAAGGCATGTGAGATGACGTCGTGGGCTTCGGG
GGTGAAGTTAACCCACCAAAACGACTGCTGTTTCCATTCTCCTGTACGAC
AAAAGTTCAAGATCTACAGGAGGTGCAGCGTTAATCAATACACGCTGAAC
AAAAAGAAAAAGGGTGTGGCTATTTGGCCCACCGGTGGGCTATTCTCTTA
TTTACCCCCCCACCTGGATCTCGCGTCAGAAGACTTGGTTGGTCACAGTA
CATGCATGGGTGTGGTAGGGTTAGGGTTAGCTATTATCGGGTCTATCGTG
CAGCCCAAACGGTCCCGTCTACGTGCTACCACGGCCGGTGGGGTGGTTGG
TGTTTTCTGGTATGTATGGCTATTTGCCCTTACATACCGGAAAACACCAA
CCACCCAACCGGCCGTAACATCACGTAGACAGGGCCGTTTGGGCTGCACG
AATGGCCCCATGATAGCCCTGCAACGCGCCAATATACTCGTGCATGTATT
GTGACCAACCGTGTCTTCTGACGCGAGATCCAGGTGGTGGGGTAAATTTT
GGTATGGCCCACCGGTGGGGCAAATAACCATTCCCAAAGAAAAAAACTTA
CTCGGGGGGCGTAATCCCTCGATATTCTTCATATTATCTCCAACTATTTT
CCTGTTAGACGTGGCGCTGGCGCGCGTGGTCCACGGTAGGCCTAATCTCT
GTGGCGAAGCTTATCTGCAGCCCCCCCCGGGGATCTCGAAACAACTGCGC
TCCGATAGCGAGACGGTTTTTCCCCGTTTGTTAAATTTGAAGAGGTGTCT
CTTGTTTACTTTCAGCGATACACCTGCATAAAGTTTTAAACGGAGTTTCT
GGCTAATGGTGCCGTCCAGAAAAGGGGGAGGGTAAATATCCGCCCCCCAG
GGGTGGCCAAACATCGCCACGTAACGGTAGATTGGCCCCACGATGCTCAT
CATGCGGAAGCATGACTCTGGAGAGTCCTCTATTGAATAATTATGGGCTG
ATGCGTACCACGCGGCCTTGCTCCTTCGAGACAGATGCATCTTGATCCAA
AGGTGTCTTTCGTCATTAAACGCTCATAGTACCCTCATTAGGGGATATAT
TCCGTGGGGCGCTTCCCCGGCTGCTTTCGAGTTGTTCAACGATTGGGGAG
GGCGGGGATACGACGATTCCGTCCCCGGAGAGGTCACCAAAACAGCCCAT
TCCGGGGATAGAACTACATGGTCCCCTACATGGTCGACAAGCTTGCCCCG
AATTGAAATCATTCCACCAGGGGATTGGTCAAATATGTCCCCGGTAGGGT
CTATTTTTGTGGTGTCCCCTCCCATAACGGGGACAAATTTGTTACACCCC
CGCACCCCCCCCCCCCAATCGTTGAACGACTCTTTCGCTGTTTCCTGTCG
GGATTCTTGTTGCATAATGTATCTCCCGCCCTCCCACAGACGAGCTGTAG
AGGAAGCAGAAGCAGCTCTGGAAGAAGTGCCGAGGCAATGTCAAATCATC
TCAAAAGAGCCCTCAACTCCCACGGACTCCGTCTACCCACCCAGGTCTGC
CCCAGAACCATCGTGCATACCTTTTTAAGACTATTTCTTCCGCTACAACG
CGTGCCCGAAACTTCACAAGCACCGGTTGAATCGTGTCGTGGGAATGCGT
CGAAAGAAAACTGGGATGACCTCGAGTTTCATGCCCGACCAAGCACCTCG
CGAGGGGATCCCACCACCACCGATCGCCACCGAGTGCTAACACCGTCGCT
TTGTGCCACACGTACCCTCAACAGCATCGATGACCAAGTACTCGAGGCAT
CACCGGAAGGCTCGTCGTCTGGATCGCAGCCTTTCGTCGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig766:244479..246619+

>mRNA_F-serratus_M_contig766.18919.1 ID=mRNA_F-serratus_M_contig766.18919.1|Name=mRNA_F-serratus_M_contig766.18919.1|organism=Fucus serratus male|type=CDS|length=504bp|location=Sequence derived from alignment at F-serratus_M_contig766:244479..246619+ (Fucus serratus male)
ATGTCAGATCTCGATGCCGAACTGAGATTGACGCTACGATCGTTCGAATG
CAAACTGCGAACGCGATCTGCCACCATACGATGTCAGATCTCGATGCCGA
ACTGAGATTGACGCTACGATCGTTCGAATGCAAACTGCGAACGCGATCTG
CCACCATACGACGAGCTGTAGAGGAAGCAGAAGCAGCTCTGGAAGAAGTG
CCGAGGCAATGTCAAATCATCTCAAAAGAGCCCTCAACTCCCACGGACTC
CGTCTACCCACCCAGACGAGCTGTAGAGGAAGCAGAAGCAGCTCTGGAAG
AAGTGCCGAGGCAATGTCAAATCATCTCAAAAGAGCCCTCAACTCCCACG
GACTCCGTCTACCCACCCAGCATCGATGACCAAGTACTCGAGGCATCACC
GGAAGGCTCGTCGTCTGGATCGCAGCCTTTCGTCGGCCATCGATGACCAA
GTACTCGAGGCATCACCGGAAGGCTCGTCGTCTGGATCGCAGCCTTTCGT
CGGC
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