mRNA_F-serratus_M_contig125.1895.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig125.1895.1
Unique NamemRNA_F-serratus_M_contig125.1895.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig125.1895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig125contigF-serratus_M_contig125:688216..688624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929177.1216216-CDS-F-serratus_M_contig125:688215..6885481622929177.1216216-CDS-F-serratus_M_contig125:688215..688548Fucus serratus maleCDSF-serratus_M_contig125 688216..688548 +
1690962738.0438554-CDS-F-serratus_M_contig125:688215..6885481690962738.0438554-CDS-F-serratus_M_contig125:688215..688548Fucus serratus maleCDSF-serratus_M_contig125 688216..688548 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929177.1401963-UTR-F-serratus_M_contig125:688548..6886241622929177.1401963-UTR-F-serratus_M_contig125:688548..688624Fucus serratus maleUTRF-serratus_M_contig125 688549..688624 +
1690962738.057633-UTR-F-serratus_M_contig125:688548..6886241690962738.057633-UTR-F-serratus_M_contig125:688548..688624Fucus serratus maleUTRF-serratus_M_contig125 688549..688624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig125.1895.1prot_F-serratus_M_contig125.1895.1Fucus serratus malepolypeptideF-serratus_M_contig125 688216..688548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig125.1895.1

>prot_F-serratus_M_contig125.1895.1 ID=prot_F-serratus_M_contig125.1895.1|Name=mRNA_F-serratus_M_contig125.1895.1|organism=Fucus serratus male|type=polypeptide|length=111bp
CRVLRCPVVSLSGSADGDGLGSCFSPRSILASLSSSSKIIRTSGCETGIF
SDAESAACNSLTSSRRHALSSFRVGGGSLPSTIGWRSKPFSLRQVVSLWS
ARKVFILSRW*
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mRNA from alignment at F-serratus_M_contig125:688216..688624+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig125.1895.1 ID=mRNA_F-serratus_M_contig125.1895.1|Name=mRNA_F-serratus_M_contig125.1895.1|organism=Fucus serratus male|type=mRNA|length=409bp|location=Sequence derived from alignment at F-serratus_M_contig125:688216..688624+ (Fucus serratus male)
TGCAGGGTACTCCGTTGTCCGGTTGTTTCGCTGTCCGGGTCAGCTGATGG
TGATGGTTTGGGCTCTTGTTTTAGCCCCAGGTCCATTCTAGCCTCTCTGT
CTTCATCCTCCAAAATAATACGCACATCTGGCTGCGAAACGGGAATTTTT
TCTGATGCCGAAAGTGCAGCTTGTAACTCCTTAACCTCAAGCCGCAGACA
TGCATTGTCTTCATTTCGCGTAGGGGGAGGAAGTTTACCGAGCACTATAG
GCTGGAGATCAAAACCGTTTTCCCTGCGCCAGGTCGTTAGCTTGTGGTCC
GCGAGGAAAGTCTTCATCTTATCCAGGTGGTGAGCAGTAACAACTTCTGC
GATCTCGTTTGATTTATCTCGGCGCACCCGGTTCTCGTCGGTTTCAAACA
TGATACCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig125:688216..688624+

>mRNA_F-serratus_M_contig125.1895.1 ID=mRNA_F-serratus_M_contig125.1895.1|Name=mRNA_F-serratus_M_contig125.1895.1|organism=Fucus serratus male|type=CDS|length=666bp|location=Sequence derived from alignment at F-serratus_M_contig125:688216..688624+ (Fucus serratus male)
TGCAGGGTACTCCGTTGTCCGGTTGTTTCGCTGTCCGGGTCAGCTGATGG
TGATGGTTTGGGCTCTTGTTTTAGCCCCAGGTCCATTCTAGCCTCTCTGT
CTTCATCCTCCAAAATAATACGCACATCTGGCTGCGAAACGGGAATTTTT
TCTGATGCCGAAAGTGCAGCTTGTAACTCCTTAACCTCAAGCCGCAGACA
TGCATTGTCTTCATTTCGCGTAGGGGGAGGAAGTTTACCGAGCACTATAG
GCTGGAGATCAAAACCGTTTTCCCTGCGCCAGGTCGTTAGCTTGTGGTCC
GCGAGGAAAGTCTTCATCTTATCCAGGTGGTGATGCAGGGTACTCCGTTG
TCCGGTTGTTTCGCTGTCCGGGTCAGCTGATGGTGATGGTTTGGGCTCTT
GTTTTAGCCCCAGGTCCATTCTAGCCTCTCTGTCTTCATCCTCCAAAATA
ATACGCACATCTGGCTGCGAAACGGGAATTTTTTCTGATGCCGAAAGTGC
AGCTTGTAACTCCTTAACCTCAAGCCGCAGACATGCATTGTCTTCATTTC
GCGTAGGGGGAGGAAGTTTACCGAGCACTATAGGCTGGAGATCAAAACCG
TTTTCCCTGCGCCAGGTCGTTAGCTTGTGGTCCGCGAGGAAAGTCTTCAT
CTTATCCAGGTGGTGA
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